Mercurial > repos > nml > filter_vcf
diff filtervcf.xml @ 0:93ea196681c8 draft
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0"
author | nml |
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date | Tue, 27 Aug 2019 12:31:30 -0400 |
parents | |
children | 48922d9ca355 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/filtervcf.xml Tue Aug 27 12:31:30 2019 -0400 @@ -0,0 +1,27 @@ +<tool id="filtervcf" name="Filter vcf" version ="1.8.2"> + <description>filter out indels and complex SNVS</description> + <requirements> + <requirement type="package" version="1.8.2">snvphyl-tools</requirement> + </requirements> + <command detect_errors="exit_code"> + filterVcf.pl --noindels $vcf + -o $vcfout + </command> + <inputs> + <param name="vcf" type="data" label="VCF file" format="vcf"/> + </inputs> + <outputs> + <data format="vcf" name="vcfout" /> + </outputs> + <tests> + <test> + <param name="vcf" value="filterVcf.input.1.vcf"/> + <output name="vcfout" file="filterVcf.output.1.vcf"/> + </test> + </tests> + <help> + Filter out indels and complex variants from VCF file + </help> +<citations> +</citations> +</tool>