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annotate CHANGE @ 4:35cb17bd8bf9 draft

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planemo upload commit ba4e93c036a072d6aac883bc1aba55e26256498c
author nml
date Mon, 08 Aug 2016 15:56:56 -0400
parents e37014a072e9
children
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35cb17bd8bf9 planemo upload commit ba4e93c036a072d6aac883bc1aba55e26256498c
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1 1.4
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2 ===
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3 - Supports SPAdes 3.9
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4 - CHANGE : Several minor bugs.
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5 1.3
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6 ===
4
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7 - Supports SPAdes 3.8
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8 - CHANGE: Improved running time and RAM consumption.
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9
0
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10 1.2
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11 ===
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12 - Supports SPades 3.6.2
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13
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14 1.1
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15 ===
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16 - Supports SPades 3.6.1
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17
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18 1.0
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19 ===
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20 - Supports SPAdes 3.5.0
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21 - New MismatchCorrector module.
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22 - Support for Oxford Nanopore long reads.
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23 - Support for Lucigen NxMate mate-pair libraries.
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24 - Possibility to specify coverage cutoff: automatic and manual.
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25 - CHANGE: Better running time.
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26 - CHANGE: Improved RAM consumption.
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27 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end).
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28
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29 FIX: Fixed FASTG format.
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30 0.9
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31 ===
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32 - Supports SPAdes 3.1.1
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33 - Supports Mate-pair only assembly with high-quality libraries
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34 - Added support for List Paired Collection for files in a library.
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35 - Renaming of contig names in scaffolds and contig files if List Paired Collection given
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36
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37 0.7
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38 ===
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39 (thanks to Nicola Soranzo for fixing these bugs)
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40 - spades.pl doesn't die when NODE number is 0
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41 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format
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42 - switched the --threads parameter to $GALAXY_SLOTS
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43 - a few minor improvements
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44
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45 0.6
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46 ===
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47 - Supports SPAdes 2.5.1
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48 - Disables gzipped output for corrected reads
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49 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes
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50 new input format
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51 - Adds licensing information
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52
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53 (started at version 0.6)