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annotate CHANGE @ 2:e37014a072e9 draft

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planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
author nml
date Tue, 31 May 2016 15:43:30 -0400
parents 009c00203195
children 35cb17bd8bf9
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2
e37014a072e9 planemo upload commit 733f396b6a4397c3b133bcb6fb3c10f5970db230-dirty
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1 1.3
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2 ===
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3 - Supports SPades 3.8
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4 - CHANGE: Improved running time and RAM consumption.
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5
0
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6 1.2
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7 ===
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8 - Supports SPades 3.6.2
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9
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10 1.1
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11 ===
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12 - Supports SPades 3.6.1
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13
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14 1.0
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15 ===
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16 - Supports SPAdes 3.5.0
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17 - New MismatchCorrector module.
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18 - Support for Oxford Nanopore long reads.
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19 - Support for Lucigen NxMate mate-pair libraries.
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20 - Possibility to specify coverage cutoff: automatic and manual.
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21 - CHANGE: Better running time.
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22 - CHANGE: Improved RAM consumption.
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23 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end).
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24
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25 FIX: Fixed FASTG format.
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26 0.9
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27 ===
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28 - Supports SPAdes 3.1.1
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29 - Supports Mate-pair only assembly with high-quality libraries
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30 - Added support for List Paired Collection for files in a library.
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31 - Renaming of contig names in scaffolds and contig files if List Paired Collection given
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32
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33 0.7
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34 ===
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35 (thanks to Nicola Soranzo for fixing these bugs)
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36 - spades.pl doesn't die when NODE number is 0
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37 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format
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38 - switched the --threads parameter to $GALAXY_SLOTS
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39 - a few minor improvements
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40
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41 0.6
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42 ===
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43 - Supports SPAdes 2.5.1
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44 - Disables gzipped output for corrected reads
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45 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes
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46 new input format
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47 - Adds licensing information
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48
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49 (started at version 0.6)