Mercurial > repos > nml > spades
comparison CHANGE @ 0:009c00203195 draft
planemo upload commit 3fd243b12e91a3fe71083376f40e85647c8b892b-dirty
| author | nml |
|---|---|
| date | Mon, 18 Jan 2016 09:53:28 -0500 |
| parents | |
| children | e37014a072e9 |
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| -1:000000000000 | 0:009c00203195 |
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| 1 1.2 | |
| 2 === | |
| 3 - Supports SPades 3.6.2 | |
| 4 | |
| 5 1.1 | |
| 6 === | |
| 7 - Supports SPades 3.6.1 | |
| 8 | |
| 9 1.0 | |
| 10 === | |
| 11 - Supports SPAdes 3.5.0 | |
| 12 - New MismatchCorrector module. | |
| 13 - Support for Oxford Nanopore long reads. | |
| 14 - Support for Lucigen NxMate mate-pair libraries. | |
| 15 - Possibility to specify coverage cutoff: automatic and manual. | |
| 16 - CHANGE: Better running time. | |
| 17 - CHANGE: Improved RAM consumption. | |
| 18 - CHANGE: High-quality mate-pairs are now assumed to have forward-revers orientation (same as paired-end). | |
| 19 | |
| 20 FIX: Fixed FASTG format. | |
| 21 0.9 | |
| 22 === | |
| 23 - Supports SPAdes 3.1.1 | |
| 24 - Supports Mate-pair only assembly with high-quality libraries | |
| 25 - Added support for List Paired Collection for files in a library. | |
| 26 - Renaming of contig names in scaffolds and contig files if List Paired Collection given | |
| 27 | |
| 28 0.7 | |
| 29 === | |
| 30 (thanks to Nicola Soranzo for fixing these bugs) | |
| 31 - spades.pl doesn't die when NODE number is 0 | |
| 32 - removed the --rectangles option (will be deprecated in SPAdes 2.6), because it uses a different seqid format | |
| 33 - switched the --threads parameter to $GALAXY_SLOTS | |
| 34 - a few minor improvements | |
| 35 | |
| 36 0.6 | |
| 37 === | |
| 38 - Supports SPAdes 2.5.1 | |
| 39 - Disables gzipped output for corrected reads | |
| 40 - Removes the hack that was necessary to accept .dat files (thanks to SPAdes | |
| 41 new input format | |
| 42 - Adds licensing information | |
| 43 | |
| 44 (started at version 0.6) |