0
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1 HMMER3/b [3.0 | March 2010]
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2 NAME 3_End_Eustigmatophyceae_58S_end_long
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3 LENG 45
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4 ALPH DNA
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5 RF no
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6 CS no
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7 MAP yes
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8 DATE Sun Sep 25 01:39:32 2011
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9 NSEQ 6
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10 EFFN 3.336914
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11 CKSUM 3393550359
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12 STATS LOCAL MSV -8.0163 0.71932
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13 STATS LOCAL VITERBI -7.6944 0.71932
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14 STATS LOCAL FORWARD -4.0151 0.71932
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15 HMM A C G T
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16 m->m m->i m->d i->m i->i d->m d->d
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17 COMPO 1.93226 1.59605 1.19721 1.04854
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18 1.38629 1.38629 1.38629 1.38629
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19 0.03679 4.01402 4.01402 1.46634 0.26236 0.00000 *
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20 1 3.43835 0.12958 3.48758 2.83281 1 - -
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21 1.38629 1.38629 1.38629 1.38629
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22 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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23 2 2.95070 3.59237 0.11666 3.49752 2 - -
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24 1.38629 1.38629 1.38629 1.38629
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25 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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26 3 3.43835 0.12958 3.48758 2.83281 3 - -
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27 1.38629 1.38629 1.38629 1.38629
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28 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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29 4 3.09320 2.59806 3.14118 0.17794 4 - -
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30 1.38629 1.38629 1.38629 1.38629
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31 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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32 5 3.09320 2.59806 3.14118 0.17794 5 - -
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33 1.38629 1.38629 1.38629 1.38629
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34 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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35 6 3.09320 2.59806 3.14118 0.17794 6 - -
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36 1.38629 1.38629 1.38629 1.38629
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37 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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38 7 3.43835 0.12958 3.48758 2.83281 7 - -
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39 1.38629 1.38629 1.38629 1.38629
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40 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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41 8 2.95070 3.59237 0.11666 3.49752 8 - -
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42 1.38629 1.38629 1.38629 1.38629
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|
43 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
44 9 2.95070 3.59237 0.11666 3.49752 9 - -
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|
45 1.38629 1.38629 1.38629 1.38629
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|
46 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
47 10 2.95070 3.59237 0.11666 3.49752 10 - -
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|
48 1.38629 1.38629 1.38629 1.38629
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|
49 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
50 11 0.14130 3.38481 2.80488 3.28690 11 - -
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|
51 1.38629 1.38629 1.38629 1.38629
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|
52 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
53 12 3.09320 2.59806 3.14118 0.17794 12 - -
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54 1.38629 1.38629 1.38629 1.38629
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|
55 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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56 13 0.14130 3.38481 2.80488 3.28690 13 - -
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|
57 1.38629 1.38629 1.38629 1.38629
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|
58 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
59 14 3.09320 2.59806 3.14118 0.17794 14 - -
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|
60 1.38629 1.38629 1.38629 1.38629
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|
61 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
62 15 2.95070 3.59237 0.11666 3.49752 15 - -
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|
63 1.38629 1.38629 1.38629 1.38629
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|
64 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
65 16 3.43835 0.12958 3.48758 2.83281 16 - -
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|
66 1.38629 1.38629 1.38629 1.38629
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|
67 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
68 17 3.43835 0.12958 3.48758 2.83281 17 - -
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|
69 1.38629 1.38629 1.38629 1.38629
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|
70 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
71 18 3.43835 0.12958 3.48758 2.83281 18 - -
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|
72 1.38629 1.38629 1.38629 1.38629
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73 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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74 19 2.95070 3.59237 0.11666 3.49752 19 - -
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|
75 1.38629 1.38629 1.38629 1.38629
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|
76 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
77 20 3.09320 2.59806 3.14118 0.17794 20 - -
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|
78 1.38629 1.38629 1.38629 1.38629
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|
79 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
80 21 3.09320 2.59806 3.14118 0.17794 21 - -
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|
81 1.38629 1.38629 1.38629 1.38629
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|
82 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
83 22 0.14130 3.38481 2.80488 3.28690 22 - -
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|
84 1.38629 1.38629 1.38629 1.38629
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|
85 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
86 23 2.95070 3.59237 0.11666 3.49752 23 - -
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|
87 1.38629 1.38629 1.38629 1.38629
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|
88 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
89 24 3.43835 0.12958 3.48758 2.83281 24 - -
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|
90 1.38629 1.38629 1.38629 1.38629
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|
91 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
92 25 0.14130 3.38481 2.80488 3.28690 25 - -
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|
93 1.38629 1.38629 1.38629 1.38629
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|
94 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
95 26 3.09320 2.59806 3.14118 0.17794 26 - -
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|
96 1.38629 1.38629 1.38629 1.38629
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|
97 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
98 27 2.95070 3.59237 0.11666 3.49752 27 - -
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|
99 1.38629 1.38629 1.38629 1.38629
|
|
100 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
101 28 3.09320 2.59806 3.14118 0.17794 28 - -
|
|
102 1.38629 1.38629 1.38629 1.38629
|
|
103 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
104 29 3.09320 2.59806 3.14118 0.17794 29 - -
|
|
105 1.38629 1.38629 1.38629 1.38629
|
|
106 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
107 30 3.09320 2.59806 3.14118 0.17794 30 - -
|
|
108 1.38629 1.38629 1.38629 1.38629
|
|
109 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
110 31 2.95070 3.59237 0.11666 3.49752 31 - -
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|
111 1.38629 1.38629 1.38629 1.38629
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|
112 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
113 32 3.09320 2.59806 3.14118 0.17794 32 - -
|
|
114 1.38629 1.38629 1.38629 1.38629
|
|
115 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
116 33 3.09320 2.59806 3.14118 0.17794 33 - -
|
|
117 1.38629 1.38629 1.38629 1.38629
|
|
118 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
119 34 2.95070 3.59237 0.11666 3.49752 34 - -
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|
120 1.38629 1.38629 1.38629 1.38629
|
|
121 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
122 35 2.95070 3.59237 0.11666 3.49752 35 - -
|
|
123 1.38629 1.38629 1.38629 1.38629
|
|
124 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
125 36 0.14130 3.38481 2.80488 3.28690 36 - -
|
|
126 1.38629 1.38629 1.38629 1.38629
|
|
127 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
128 37 2.95070 3.59237 0.11666 3.49752 37 - -
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|
129 1.38629 1.38629 1.38629 1.38629
|
|
130 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
131 38 3.09320 2.59806 3.14118 0.17794 38 - -
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|
132 1.38629 1.38629 1.38629 1.38629
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|
133 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
134 39 2.95070 3.59237 0.11666 3.49752 39 - -
|
|
135 1.38629 1.38629 1.38629 1.38629
|
|
136 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
137 40 3.09320 2.59806 3.14118 0.17794 40 - -
|
|
138 1.38629 1.38629 1.38629 1.38629
|
|
139 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
140 41 3.43835 0.12958 3.48758 2.83281 41 - -
|
|
141 1.38629 1.38629 1.38629 1.38629
|
|
142 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
|
|
143 42 3.09320 2.59806 3.14118 0.17794 42 - -
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|
144 1.38629 1.38629 1.38629 1.38629
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|
145 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
146 43 2.95070 3.59237 0.11666 3.49752 43 - -
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|
147 1.38629 1.38629 1.38629 1.38629
|
|
148 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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149 44 3.09320 2.59806 3.14118 0.17794 44 - -
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150 1.38629 1.38629 1.38629 1.38629
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|
151 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547
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|
152 45 3.09320 2.59806 3.14118 0.17794 45 - -
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153 1.38629 1.38629 1.38629 1.38629
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154 0.01856 3.99580 * 1.46634 0.26236 0.00000 *
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155 //
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156 HMMER3/b [3.0 | March 2010]
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157 NAME 2_5.8_Eustigmatophyceae_58S_start_long
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158 LENG 45
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159 ALPH DNA
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160 RF no
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161 CS no
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162 MAP yes
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163 DATE Sun Sep 25 01:34:03 2011
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164 NSEQ 6
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165 EFFN 3.213867
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166 CKSUM 1922503689
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167 STATS LOCAL MSV -8.1335 0.71933
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168 STATS LOCAL VITERBI -7.6652 0.71933
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169 STATS LOCAL FORWARD -4.1546 0.71933
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170 HMM A C G T
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171 m->m m->i m->d i->m i->i d->m d->d
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172 COMPO 1.22065 1.26567 1.52763 1.58055
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173 1.38629 1.38629 1.38629 1.38629
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174 0.03764 3.99155 3.99155 1.46634 0.26236 0.00000 *
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175 1 3.39218 0.13520 3.44336 2.79911 1 - -
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176 1.38629 1.38629 1.38629 1.38629
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177 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
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178 2 0.14667 3.34479 2.77882 3.24311 2 - -
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179 1.38629 1.38629 1.38629 1.38629
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|
180 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
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|
181 3 0.14667 3.34479 2.77882 3.24311 3 - -
|
|
182 1.38629 1.38629 1.38629 1.38629
|
|
183 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
184 4 3.39218 0.13520 3.44336 2.79911 4 - -
|
|
185 1.38629 1.38629 1.38629 1.38629
|
|
186 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
187 5 3.05294 2.57242 3.10245 0.18453 5 - -
|
|
188 1.38629 1.38629 1.38629 1.38629
|
|
189 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
190 6 3.05294 2.57242 3.10245 0.18453 6 - -
|
|
191 1.38629 1.38629 1.38629 1.38629
|
|
192 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
193 7 3.05294 2.57242 3.10245 0.18453 7 - -
|
|
194 1.38629 1.38629 1.38629 1.38629
|
|
195 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
196 8 3.39218 0.13520 3.44336 2.79911 8 - -
|
|
197 1.38629 1.38629 1.38629 1.38629
|
|
198 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
199 9 0.14667 3.34479 2.77882 3.24311 9 - -
|
|
200 1.38629 1.38629 1.38629 1.38629
|
|
201 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
202 10 2.92262 3.55163 0.12119 3.45259 10 - -
|
|
203 1.38629 1.38629 1.38629 1.38629
|
|
204 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
205 11 3.39218 0.13520 3.44336 2.79911 11 - -
|
|
206 1.38629 1.38629 1.38629 1.38629
|
|
207 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
208 12 0.14667 3.34479 2.77882 3.24311 12 - -
|
|
209 1.38629 1.38629 1.38629 1.38629
|
|
210 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
211 13 0.14667 3.34479 2.77882 3.24311 13 - -
|
|
212 1.38629 1.38629 1.38629 1.38629
|
|
213 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
214 14 3.39218 0.13520 3.44336 2.79911 14 - -
|
|
215 1.38629 1.38629 1.38629 1.38629
|
|
216 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
217 15 2.92262 3.55163 0.12119 3.45259 15 - -
|
|
218 1.38629 1.38629 1.38629 1.38629
|
|
219 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
220 16 2.92262 3.55163 0.12119 3.45259 16 - -
|
|
221 1.38629 1.38629 1.38629 1.38629
|
|
222 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
223 17 0.14667 3.34479 2.77882 3.24311 17 - -
|
|
224 1.38629 1.38629 1.38629 1.38629
|
|
225 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
226 18 3.05294 2.57242 3.10245 0.18453 18 - -
|
|
227 1.38629 1.38629 1.38629 1.38629
|
|
228 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
229 19 2.92262 3.55163 0.12119 3.45259 19 - -
|
|
230 1.38629 1.38629 1.38629 1.38629
|
|
231 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
232 20 3.05294 2.57242 3.10245 0.18453 20 - -
|
|
233 1.38629 1.38629 1.38629 1.38629
|
|
234 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
235 21 3.39218 0.13520 3.44336 2.79911 21 - -
|
|
236 1.38629 1.38629 1.38629 1.38629
|
|
237 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
238 22 3.05294 2.57242 3.10245 0.18453 22 - -
|
|
239 1.38629 1.38629 1.38629 1.38629
|
|
240 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
241 23 3.05294 2.57242 3.10245 0.18453 23 - -
|
|
242 1.38629 1.38629 1.38629 1.38629
|
|
243 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
244 24 2.92262 3.55163 0.12119 3.45259 24 - -
|
|
245 1.38629 1.38629 1.38629 1.38629
|
|
246 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
247 25 2.92262 3.55163 0.12119 3.45259 25 - -
|
|
248 1.38629 1.38629 1.38629 1.38629
|
|
249 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
250 26 3.39218 0.13520 3.44336 2.79911 26 - -
|
|
251 1.38629 1.38629 1.38629 1.38629
|
|
252 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
253 27 3.05294 2.57242 3.10245 0.18453 27 - -
|
|
254 1.38629 1.38629 1.38629 1.38629
|
|
255 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
256 28 3.39218 0.13520 3.44336 2.79911 28 - -
|
|
257 1.38629 1.38629 1.38629 1.38629
|
|
258 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
259 29 3.39218 0.13520 3.44336 2.79911 29 - -
|
|
260 1.38629 1.38629 1.38629 1.38629
|
|
261 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
262 30 3.39218 0.13520 3.44336 2.79911 30 - -
|
|
263 1.38629 1.38629 1.38629 1.38629
|
|
264 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
265 31 0.14667 3.34479 2.77882 3.24311 31 - -
|
|
266 1.38629 1.38629 1.38629 1.38629
|
|
267 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
268 32 3.39218 0.13520 3.44336 2.79911 32 - -
|
|
269 1.38629 1.38629 1.38629 1.38629
|
|
270 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
271 33 0.14667 3.34479 2.77882 3.24311 33 - -
|
|
272 1.38629 1.38629 1.38629 1.38629
|
|
273 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
274 34 0.14667 3.34479 2.77882 3.24311 34 - -
|
|
275 1.38629 1.38629 1.38629 1.38629
|
|
276 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
277 35 3.39218 0.13520 3.44336 2.79911 35 - -
|
|
278 1.38629 1.38629 1.38629 1.38629
|
|
279 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
280 36 2.92262 3.55163 0.12119 3.45259 36 - -
|
|
281 1.38629 1.38629 1.38629 1.38629
|
|
282 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
283 37 0.14667 3.34479 2.77882 3.24311 37 - -
|
|
284 1.38629 1.38629 1.38629 1.38629
|
|
285 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
286 38 3.05294 2.57242 3.10245 0.18453 38 - -
|
|
287 1.38629 1.38629 1.38629 1.38629
|
|
288 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
289 39 2.92262 3.55163 0.12119 3.45259 39 - -
|
|
290 1.38629 1.38629 1.38629 1.38629
|
|
291 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
292 40 0.14667 3.34479 2.77882 3.24311 40 - -
|
|
293 1.38629 1.38629 1.38629 1.38629
|
|
294 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
295 41 0.14667 3.34479 2.77882 3.24311 41 - -
|
|
296 1.38629 1.38629 1.38629 1.38629
|
|
297 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
298 42 2.92262 3.55163 0.12119 3.45259 42 - -
|
|
299 1.38629 1.38629 1.38629 1.38629
|
|
300 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
301 43 0.14667 3.34479 2.77882 3.24311 43 - -
|
|
302 1.38629 1.38629 1.38629 1.38629
|
|
303 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
304 44 0.14667 3.34479 2.77882 3.24311 44 - -
|
|
305 1.38629 1.38629 1.38629 1.38629
|
|
306 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547
|
|
307 45 3.39218 0.13520 3.44336 2.79911 45 - -
|
|
308 1.38629 1.38629 1.38629 1.38629
|
|
309 0.01900 3.97290 * 1.46634 0.26236 0.00000 *
|
|
310 //
|
|
311 HMMER3/b [3.0 | March 2010]
|
|
312 NAME 4_LSU_Eustigmatophyceae_4_LSU_start_long
|
|
313 LENG 45
|
|
314 ALPH DNA
|
|
315 RF no
|
|
316 CS no
|
|
317 MAP yes
|
|
318 DATE Sun Sep 25 01:43:21 2011
|
|
319 NSEQ 5
|
|
320 EFFN 3.315430
|
|
321 CKSUM 2420342418
|
|
322 STATS LOCAL MSV -8.0313 0.71931
|
|
323 STATS LOCAL VITERBI -7.5738 0.71931
|
|
324 STATS LOCAL FORWARD -3.9568 0.71931
|
|
325 HMM A C G T
|
|
326 m->m m->i m->d i->m i->i d->m d->d
|
|
327 COMPO 1.23266 1.26091 1.60118 1.49866
|
|
328 1.38629 1.38629 1.38629 1.38629
|
|
329 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 *
|
|
330 1 3.08626 2.59365 3.13451 0.17906 1 - -
|
|
331 1.38629 1.38629 1.38629 1.38629
|
|
332 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
333 2 3.08626 2.59365 3.13451 0.17906 2 - -
|
|
334 1.38629 1.38629 1.38629 1.38629
|
|
335 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
336 3 3.43043 0.13053 3.48000 2.82705 3 - -
|
|
337 1.38629 1.38629 1.38629 1.38629
|
|
338 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
339 4 2.94591 3.58540 0.11742 3.48982 4 - -
|
|
340 1.38629 1.38629 1.38629 1.38629
|
|
341 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
342 5 2.94591 3.58540 0.11742 3.48982 5 - -
|
|
343 1.38629 1.38629 1.38629 1.38629
|
|
344 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
345 6 0.14220 3.37794 2.80041 3.27938 6 - -
|
|
346 1.38629 1.38629 1.38629 1.38629
|
|
347 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
348 7 3.43043 0.13053 3.48000 2.82705 7 - -
|
|
349 1.38629 1.38629 1.38629 1.38629
|
|
350 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
351 8 3.43043 0.13053 3.48000 2.82705 8 - -
|
|
352 1.38629 1.38629 1.38629 1.38629
|
|
353 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
354 9 3.08626 2.59365 3.13451 0.17906 9 - -
|
|
355 1.38629 1.38629 1.38629 1.38629
|
|
356 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
357 10 3.43043 0.13053 3.48000 2.82705 10 - -
|
|
358 1.38629 1.38629 1.38629 1.38629
|
|
359 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
360 11 3.43043 0.13053 3.48000 2.82705 11 - -
|
|
361 1.38629 1.38629 1.38629 1.38629
|
|
362 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
363 12 0.14220 3.37794 2.80041 3.27938 12 - -
|
|
364 1.38629 1.38629 1.38629 1.38629
|
|
365 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
366 13 0.14220 3.37794 2.80041 3.27938 13 - -
|
|
367 1.38629 1.38629 1.38629 1.38629
|
|
368 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
369 14 3.08626 2.59365 3.13451 0.17906 14 - -
|
|
370 1.38629 1.38629 1.38629 1.38629
|
|
371 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
372 15 3.43043 0.13053 3.48000 2.82705 15 - -
|
|
373 1.38629 1.38629 1.38629 1.38629
|
|
374 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
375 16 0.14220 3.37794 2.80041 3.27938 16 - -
|
|
376 1.38629 1.38629 1.38629 1.38629
|
|
377 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
378 17 0.14220 3.37794 2.80041 3.27938 17 - -
|
|
379 1.38629 1.38629 1.38629 1.38629
|
|
380 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
381 18 2.94591 3.58540 0.11742 3.48982 18 - -
|
|
382 1.38629 1.38629 1.38629 1.38629
|
|
383 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
384 19 3.43043 0.13053 3.48000 2.82705 19 - -
|
|
385 1.38629 1.38629 1.38629 1.38629
|
|
386 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
387 20 0.14220 3.37794 2.80041 3.27938 20 - -
|
|
388 1.38629 1.38629 1.38629 1.38629
|
|
389 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
390 21 0.14220 3.37794 2.80041 3.27938 21 - -
|
|
391 1.38629 1.38629 1.38629 1.38629
|
|
392 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
393 22 2.94591 3.58540 0.11742 3.48982 22 - -
|
|
394 1.38629 1.38629 1.38629 1.38629
|
|
395 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
396 23 2.94591 3.58540 0.11742 3.48982 23 - -
|
|
397 1.38629 1.38629 1.38629 1.38629
|
|
398 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
399 24 3.43043 0.13053 3.48000 2.82705 24 - -
|
|
400 1.38629 1.38629 1.38629 1.38629
|
|
401 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
402 25 3.08626 2.59365 3.13451 0.17906 25 - -
|
|
403 1.38629 1.38629 1.38629 1.38629
|
|
404 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
405 26 0.14220 3.37794 2.80041 3.27938 26 - -
|
|
406 1.38629 1.38629 1.38629 1.38629
|
|
407 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
408 27 3.43043 0.13053 3.48000 2.82705 27 - -
|
|
409 1.38629 1.38629 1.38629 1.38629
|
|
410 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
411 28 3.43043 0.13053 3.48000 2.82705 28 - -
|
|
412 1.38629 1.38629 1.38629 1.38629
|
|
413 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
414 29 3.43043 0.13053 3.48000 2.82705 29 - -
|
|
415 1.38629 1.38629 1.38629 1.38629
|
|
416 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
417 30 2.94591 3.58540 0.11742 3.48982 30 - -
|
|
418 1.38629 1.38629 1.38629 1.38629
|
|
419 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
420 31 3.43043 0.13053 3.48000 2.82705 31 - -
|
|
421 1.38629 1.38629 1.38629 1.38629
|
|
422 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
423 32 3.08626 2.59365 3.13451 0.17906 32 - -
|
|
424 1.38629 1.38629 1.38629 1.38629
|
|
425 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
426 33 2.94591 3.58540 0.11742 3.48982 33 - -
|
|
427 1.38629 1.38629 1.38629 1.38629
|
|
428 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
429 34 0.33543 2.85734 1.81858 2.72885 34 - -
|
|
430 1.38629 1.38629 1.38629 1.38629
|
|
431 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
432 35 0.14220 3.37794 2.80041 3.27938 35 - -
|
|
433 1.38629 1.38629 1.38629 1.38629
|
|
434 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
435 36 3.08626 2.59365 3.13451 0.17906 36 - -
|
|
436 1.38629 1.38629 1.38629 1.38629
|
|
437 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
438 37 3.08626 2.59365 3.13451 0.17906 37 - -
|
|
439 1.38629 1.38629 1.38629 1.38629
|
|
440 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
441 38 3.08626 2.59365 3.13451 0.17906 38 - -
|
|
442 1.38629 1.38629 1.38629 1.38629
|
|
443 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
444 39 0.14220 3.37794 2.80041 3.27938 39 - -
|
|
445 1.38629 1.38629 1.38629 1.38629
|
|
446 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
447 40 0.14220 3.37794 2.80041 3.27938 40 - -
|
|
448 1.38629 1.38629 1.38629 1.38629
|
|
449 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
450 41 2.94591 3.58540 0.11742 3.48982 41 - -
|
|
451 1.38629 1.38629 1.38629 1.38629
|
|
452 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
453 42 3.43043 0.13053 3.48000 2.82705 42 - -
|
|
454 1.38629 1.38629 1.38629 1.38629
|
|
455 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
456 43 0.14220 3.37794 2.80041 3.27938 43 - -
|
|
457 1.38629 1.38629 1.38629 1.38629
|
|
458 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
459 44 3.08626 2.59365 3.13451 0.17906 44 - -
|
|
460 1.38629 1.38629 1.38629 1.38629
|
|
461 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547
|
|
462 45 0.14220 3.37794 2.80041 3.27938 45 - -
|
|
463 1.38629 1.38629 1.38629 1.38629
|
|
464 0.01864 3.99184 * 1.46634 0.26236 0.00000 *
|
|
465 //
|
|
466 HMMER3/b [3.0 | March 2010]
|
|
467 NAME 1_SSU_Eustigmatophyceae_1_SSU_end_long
|
|
468 LENG 45
|
|
469 ALPH DNA
|
|
470 RF no
|
|
471 CS no
|
|
472 MAP yes
|
|
473 DATE Thu Jan 19 22:34:10 2012
|
|
474 NSEQ 6
|
|
475 EFFN 3.225586
|
|
476 CKSUM 778367950
|
|
477 STATS LOCAL MSV -8.0048 0.71933
|
|
478 STATS LOCAL VITERBI -7.6831 0.71933
|
|
479 STATS LOCAL FORWARD -4.1090 0.71933
|
|
480 HMM A C G T
|
|
481 m->m m->i m->d i->m i->i d->m d->d
|
|
482 COMPO 1.27189 1.62645 1.24659 1.44567
|
|
483 1.38629 1.38629 1.38629 1.38629
|
|
484 0.03756 3.99371 3.99371 1.46634 0.26236 0.00000 *
|
|
485 1 0.14614 3.34867 2.78135 3.24736 1 - -
|
|
486 1.38629 1.38629 1.38629 1.38629
|
|
487 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
488 2 2.92536 3.55560 0.12074 3.45696 2 - -
|
|
489 1.38629 1.38629 1.38629 1.38629
|
|
490 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
491 3 3.05683 2.57491 3.10619 0.18389 3 - -
|
|
492 1.38629 1.38629 1.38629 1.38629
|
|
493 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
494 4 3.39667 0.13464 3.44765 2.80239 4 - -
|
|
495 1.38629 1.38629 1.38629 1.38629
|
|
496 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
497 5 2.92536 3.55560 0.12074 3.45696 5 - -
|
|
498 1.38629 1.38629 1.38629 1.38629
|
|
499 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
500 6 3.05683 2.57491 3.10619 0.18389 6 - -
|
|
501 1.38629 1.38629 1.38629 1.38629
|
|
502 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
503 7 0.14614 3.34867 2.78135 3.24736 7 - -
|
|
504 1.38629 1.38629 1.38629 1.38629
|
|
505 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
506 8 0.14614 3.34867 2.78135 3.24736 8 - -
|
|
507 1.38629 1.38629 1.38629 1.38629
|
|
508 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
509 9 3.39667 0.13464 3.44765 2.80239 9 - -
|
|
510 1.38629 1.38629 1.38629 1.38629
|
|
511 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
512 10 0.14614 3.34867 2.78135 3.24736 10 - -
|
|
513 1.38629 1.38629 1.38629 1.38629
|
|
514 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
515 11 0.14614 3.34867 2.78135 3.24736 11 - -
|
|
516 1.38629 1.38629 1.38629 1.38629
|
|
517 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
518 12 2.92536 3.55560 0.12074 3.45696 12 - -
|
|
519 1.38629 1.38629 1.38629 1.38629
|
|
520 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
521 13 2.92536 3.55560 0.12074 3.45696 13 - -
|
|
522 1.38629 1.38629 1.38629 1.38629
|
|
523 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
524 14 3.05683 2.57491 3.10619 0.18389 14 - -
|
|
525 1.38629 1.38629 1.38629 1.38629
|
|
526 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
527 15 3.05683 2.57491 3.10619 0.18389 15 - -
|
|
528 1.38629 1.38629 1.38629 1.38629
|
|
529 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
530 16 3.05683 2.57491 3.10619 0.18389 16 - -
|
|
531 1.38629 1.38629 1.38629 1.38629
|
|
532 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
533 17 3.39667 0.13464 3.44765 2.80239 17 - -
|
|
534 1.38629 1.38629 1.38629 1.38629
|
|
535 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
536 18 3.39667 0.13464 3.44765 2.80239 18 - -
|
|
537 1.38629 1.38629 1.38629 1.38629
|
|
538 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
539 19 2.92536 3.55560 0.12074 3.45696 19 - -
|
|
540 1.38629 1.38629 1.38629 1.38629
|
|
541 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
542 20 3.05683 2.57491 3.10619 0.18389 20 - -
|
|
543 1.38629 1.38629 1.38629 1.38629
|
|
544 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
545 21 0.14614 3.34867 2.78135 3.24736 21 - -
|
|
546 1.38629 1.38629 1.38629 1.38629
|
|
547 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
548 22 2.92536 3.55560 0.12074 3.45696 22 - -
|
|
549 1.38629 1.38629 1.38629 1.38629
|
|
550 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
551 23 2.92536 3.55560 0.12074 3.45696 23 - -
|
|
552 1.38629 1.38629 1.38629 1.38629
|
|
553 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
554 24 3.05683 2.57491 3.10619 0.18389 24 - -
|
|
555 1.38629 1.38629 1.38629 1.38629
|
|
556 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
557 25 2.92536 3.55560 0.12074 3.45696 25 - -
|
|
558 1.38629 1.38629 1.38629 1.38629
|
|
559 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
560 26 0.14614 3.34867 2.78135 3.24736 26 - -
|
|
561 1.38629 1.38629 1.38629 1.38629
|
|
562 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
563 27 0.14614 3.34867 2.78135 3.24736 27 - -
|
|
564 1.38629 1.38629 1.38629 1.38629
|
|
565 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
566 28 3.39667 0.13464 3.44765 2.80239 28 - -
|
|
567 1.38629 1.38629 1.38629 1.38629
|
|
568 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
569 29 3.39667 0.13464 3.44765 2.80239 29 - -
|
|
570 1.38629 1.38629 1.38629 1.38629
|
|
571 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
572 30 3.05683 2.57491 3.10619 0.18389 30 - -
|
|
573 1.38629 1.38629 1.38629 1.38629
|
|
574 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
575 31 2.92536 3.55560 0.12074 3.45696 31 - -
|
|
576 1.38629 1.38629 1.38629 1.38629
|
|
577 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
578 32 3.39667 0.13464 3.44765 2.80239 32 - -
|
|
579 1.38629 1.38629 1.38629 1.38629
|
|
580 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
581 33 2.92536 3.55560 0.12074 3.45696 33 - -
|
|
582 1.38629 1.38629 1.38629 1.38629
|
|
583 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
584 34 2.92536 3.55560 0.12074 3.45696 34 - -
|
|
585 1.38629 1.38629 1.38629 1.38629
|
|
586 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
587 35 0.14614 3.34867 2.78135 3.24736 35 - -
|
|
588 1.38629 1.38629 1.38629 1.38629
|
|
589 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
590 36 0.14614 3.34867 2.78135 3.24736 36 - -
|
|
591 1.38629 1.38629 1.38629 1.38629
|
|
592 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
593 37 2.92536 3.55560 0.12074 3.45696 37 - -
|
|
594 1.38629 1.38629 1.38629 1.38629
|
|
595 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
596 38 2.92536 3.55560 0.12074 3.45696 38 - -
|
|
597 1.38629 1.38629 1.38629 1.38629
|
|
598 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
599 39 0.14614 3.34867 2.78135 3.24736 39 - -
|
|
600 1.38629 1.38629 1.38629 1.38629
|
|
601 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
602 40 3.05683 2.57491 3.10619 0.18389 40 - -
|
|
603 1.38629 1.38629 1.38629 1.38629
|
|
604 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
605 41 3.39667 0.13464 3.44765 2.80239 41 - -
|
|
606 1.38629 1.38629 1.38629 1.38629
|
|
607 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
608 42 0.14614 3.34867 2.78135 3.24736 42 - -
|
|
609 1.38629 1.38629 1.38629 1.38629
|
|
610 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
611 43 3.05683 2.57491 3.10619 0.18389 43 - -
|
|
612 1.38629 1.38629 1.38629 1.38629
|
|
613 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
614 44 3.05683 2.57491 3.10619 0.18389 44 - -
|
|
615 1.38629 1.38629 1.38629 1.38629
|
|
616 0.03756 3.99371 3.99371 1.46634 0.26236 1.09861 0.40547
|
|
617 45 0.14614 3.34867 2.78135 3.24736 45 - -
|
|
618 1.38629 1.38629 1.38629 1.38629
|
|
619 0.01896 3.97511 * 1.46634 0.26236 0.00000 *
|
|
620 //
|