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HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:27 2012
NSEQ  2
EFFN  2.000000
CKSUM 2003464747
STATS LOCAL MSV       -7.3950  0.72793
STATS LOCAL VITERBI   -8.3145  0.72793
STATS LOCAL FORWARD   -3.2953  0.72793
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58596  1.45659  1.21394  1.32730
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:01 2012
NSEQ  7
EFFN  3.072754
CKSUM 853724038
STATS LOCAL MSV       -8.0712  0.71932
STATS LOCAL VITERBI   -7.8377  0.71932
STATS LOCAL FORWARD   -3.9153  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72598  1.06114  1.14871  1.83950
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  0.00000        *
      1   2.88838  3.50239  0.12695  3.39840      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      2   3.33672  0.14232  3.39016  2.75827      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      3   3.33672  0.14232  3.39016  2.75827      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      4   3.33672  0.14232  3.39016  2.75827      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      5   0.15343  3.29681  2.74736  3.19071      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      6   0.15343  3.29681  2.74736  3.19071      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      7   2.88838  3.50239  0.12695  3.39840      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      8   2.88838  3.50239  0.12695  3.39840      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
      9   0.15343  3.29681  2.74736  3.19071      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     10   3.00514  2.54188  3.05644  0.19274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     11   3.33672  0.14232  3.39016  2.75827     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     12   3.33672  0.14232  3.39016  2.75827     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     13   3.33672  0.14232  3.39016  2.75827     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     14   0.15343  3.29681  2.74736  3.19071     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     15   3.00514  2.54188  3.05644  0.19274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     16   3.00514  2.54188  3.05644  0.19274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     17   3.33672  0.14232  3.39016  2.75827     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     18   3.33672  0.14232  3.39016  2.75827     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     19   3.33672  0.14232  3.39016  2.75827     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     20   2.88838  3.50239  0.12695  3.39840     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     21   2.88838  3.50239  0.12695  3.39840     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     22   2.88838  3.50239  0.12695  3.39840     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     23   3.33672  0.14232  3.39016  2.75827     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     24   3.33672  0.14232  3.39016  2.75827     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     25   0.15343  3.29681  2.74736  3.19071     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     26   3.33672  0.14232  3.39016  2.75827     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     27   2.88838  3.50239  0.12695  3.39840     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     28   3.33672  0.14232  3.39016  2.75827     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     29   3.33672  0.14232  3.39016  2.75827     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     30   3.00514  2.54188  3.05644  0.19274     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     31   2.88838  3.50239  0.12695  3.39840     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     32   2.88838  3.50239  0.12695  3.39840     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     33   3.33672  0.14232  3.39016  2.75827     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     34   3.00514  2.54188  3.05644  0.19274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     35   2.88838  3.50239  0.12695  3.39840     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     36   0.15343  3.29681  2.74736  3.19071     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     37   2.88838  3.50239  0.12695  3.39840     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     38   2.88838  3.50239  0.12695  3.39840     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     39   2.88838  3.50239  0.12695  3.39840     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     40   3.33672  0.14232  3.39016  2.75827     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     41   0.15343  3.29681  2.74736  3.19071     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     42   2.88838  3.50239  0.12695  3.39840     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     43   2.88838  3.50239  0.12695  3.39840     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     44   3.33672  0.14232  3.39016  2.75827     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03867  3.96514  3.96514  1.46634  0.26236  1.09861  0.40547
     45   3.00514  2.54188  3.05644  0.19274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01952  3.94599        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:50 2012
NSEQ  2
EFFN  2.000000
CKSUM 1769201338
STATS LOCAL MSV       -7.4098  0.72868
STATS LOCAL VITERBI   -8.2930  0.72868
STATS LOCAL FORWARD   -3.7636  0.72868
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65755  1.56600  1.31765  1.10036
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   0.23862  2.84929  2.43386  2.70756     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenba_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:58 2012
NSEQ  12
EFFN  3.653320
CKSUM 2545005974
STATS LOCAL MSV       -7.2478  0.71933
STATS LOCAL VITERBI   -7.5667  0.71933
STATS LOCAL FORWARD   -4.4610  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.90548  1.55415  1.18492  1.09628
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  0.00000        *
      1   3.54821  0.11728  3.59264  2.91206      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      2   3.01623  3.68846  0.10671  3.60381      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      3   3.54821  0.11728  3.59264  2.91206      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      4   3.54821  0.11728  3.59264  2.91206      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      5   3.01623  3.68846  0.10671  3.60381      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      6   3.19097  2.66011  3.23517  0.16302      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      7   3.19097  2.66011  3.23517  0.16302      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      8   3.01623  3.68846  0.10671  3.60381      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
      9   3.01623  3.68846  0.10671  3.60381      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     10   3.01623  3.68846  0.10671  3.60381     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     11   2.46397  0.95038  2.53528  0.80058     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     12   3.19097  2.66011  3.23517  0.16302     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     13   1.31721  2.20518  2.29020  0.65269     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     14   3.19097  2.66011  3.23517  0.16302     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     15   3.01623  3.68846  0.10671  3.60381     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     16   3.54821  0.11728  3.59264  2.91206     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     17   3.19097  2.66011  3.23517  0.16302     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     18   3.54821  0.11728  3.59264  2.91206     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     19   3.19097  2.66011  3.23517  0.16302     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     20   3.19097  2.66011  3.23517  0.16302     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     21   3.54821  0.11728  3.59264  2.91206     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     22   3.01623  3.68846  0.10671  3.60381     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     23   3.01623  3.68846  0.10671  3.60381     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     24   3.54821  0.11728  3.59264  2.91206     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     25   0.12934  3.48051  2.86668  3.39183     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     26   3.19097  2.66011  3.23517  0.16302     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     27   0.12934  3.48051  2.86668  3.39183     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     28   3.19097  2.66011  3.23517  0.16302     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     29   3.01623  3.68846  0.10671  3.60381     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     30   2.80925  1.82879  2.86859  0.32523     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     31   3.01623  3.68846  0.10671  3.60381     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     32   0.12934  3.48051  2.86668  3.39183     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     33   3.19097  2.66011  3.23517  0.16302     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     34   3.19097  2.66011  3.23517  0.16302     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     35   3.54821  0.11728  3.59264  2.91206     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     36   0.12934  3.48051  2.86668  3.39183     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     37   3.01623  3.68846  0.10671  3.60381     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     38   3.01623  3.68846  0.10671  3.60381     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     39   3.01623  3.68846  0.10671  3.60381     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     40   3.19097  2.66011  3.23517  0.16302     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     41   0.12934  3.48051  2.86668  3.39183     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.14651  4.06959  2.12696  1.46634  0.26236  1.09861  0.40547
     42   2.99921  2.53808  3.05074  0.19379     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03880  3.96188  3.96188  1.46634  0.26236  0.25204  1.50153
     43   3.01623  3.68846  0.10671  3.60381     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     44   3.19097  2.66011  3.23517  0.16302     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06959  4.06959  1.46634  0.26236  1.09861  0.40547
     45   3.19097  2.66011  3.23517  0.16302     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01753  4.05236        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenbb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:05 2012
NSEQ  2
EFFN  2.000000
CKSUM 2492946338
STATS LOCAL MSV       -7.2784  0.72847
STATS LOCAL VITERBI   -8.0968  0.72847
STATS LOCAL FORWARD   -3.6372  0.72847
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73680  1.50236  1.26569  1.14173
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenbc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:12 2012
NSEQ  2
EFFN  2.000000
CKSUM 1326273846
STATS LOCAL MSV       -7.2371  0.72835
STATS LOCAL VITERBI   -8.2153  0.72835
STATS LOCAL FORWARD   -3.6602  0.72835
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73864  1.44249  1.26678  1.18363
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenbd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:20 2012
NSEQ  2
EFFN  2.000000
CKSUM 3676096652
STATS LOCAL MSV       -7.2130  0.72850
STATS LOCAL VITERBI   -8.4369  0.72850
STATS LOCAL FORWARD   -3.6712  0.72850
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81889  1.56574  1.21422  1.10287
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenbe_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:26 2012
NSEQ  9
EFFN  3.405762
CKSUM 2444157436
STATS LOCAL MSV       -7.2647  0.71933
STATS LOCAL VITERBI   -7.8111  0.71933
STATS LOCAL FORWARD   -4.3285  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93599  1.45945  1.25584  1.08318
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  0.00000        *
      1   3.46331  0.12666  3.51148  2.85093      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      2   2.96574  3.61431  0.11430  3.52175      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      3   3.46331  0.12666  3.51148  2.85093      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      4   3.11517  2.61202  3.16230  0.17445      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      5   3.46331  0.12666  3.51148  2.85093      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      6   3.11517  2.61202  3.16230  0.17445      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      7   3.11517  2.61202  3.16230  0.17445      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      8   2.96574  3.61431  0.11430  3.52175      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      9   2.96574  3.61431  0.11430  3.52175      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     10   2.96574  3.61431  0.11430  3.52175     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     11   3.46331  0.12666  3.51148  2.85093     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     12   3.11517  2.61202  3.16230  0.17445     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     13   3.11517  2.61202  3.16230  0.17445     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     14   3.11517  2.61202  3.16230  0.17445     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     15   2.96574  3.61431  0.11430  3.52175     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     16   3.46331  0.12666  3.51148  2.85093     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     17   3.11517  2.61202  3.16230  0.17445     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     18   3.46331  0.12666  3.51148  2.85093     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     19   3.11517  2.61202  3.16230  0.17445     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     20   3.11517  2.61202  3.16230  0.17445     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     21   2.96574  3.61431  0.11430  3.52175     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     22   0.13848  3.40650  2.81894  3.31066     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     23   2.96574  3.61431  0.11430  3.52175     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     24   3.46331  0.12666  3.51148  2.85093     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     25   0.13848  3.40650  2.81894  3.31066     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     26   3.11517  2.61202  3.16230  0.17445     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     27   0.13848  3.40650  2.81894  3.31066     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     28   3.11517  2.61202  3.16230  0.17445     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     29   2.71342  0.39696  2.78195  1.61237     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     30   3.46331  0.12666  3.51148  2.85093     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     31   2.96574  3.61431  0.11430  3.52175     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     32   0.13848  3.40650  2.81894  3.31066     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     33   3.11517  2.61202  3.16230  0.17445     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     34   3.11517  2.61202  3.16230  0.17445     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     35   3.46331  0.12666  3.51148  2.85093     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     36   0.13848  3.40650  2.81894  3.31066     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     37   2.96574  3.61431  0.11430  3.52175     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     38   2.96574  3.61431  0.11430  3.52175     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     39   2.96574  3.61431  0.11430  3.52175     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     40   3.11517  2.61202  3.16230  0.17445     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     41   2.96574  3.61431  0.11430  3.52175     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     42   3.11517  2.61202  3.16230  0.17445     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     43   2.96574  3.61431  0.11430  3.52175     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     44   3.11517  2.61202  3.16230  0.17445     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     45   3.11517  2.61202  3.16230  0.17445     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01833  4.00838        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenbf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:32 2012
NSEQ  2
EFFN  2.000000
CKSUM 4109347638
STATS LOCAL MSV       -7.5168  0.72888
STATS LOCAL VITERBI   -8.4209  0.72888
STATS LOCAL FORWARD   -3.5664  0.72888
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73750  1.49258  1.37811  1.05788
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_elevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:41 2012
NSEQ  2
EFFN  2.000000
CKSUM 3825414869
STATS LOCAL MSV       -7.2301  0.72872
STATS LOCAL VITERBI   -8.2274  0.72872
STATS LOCAL FORWARD   -3.6065  0.72872
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73305  1.63696  1.26224  1.06228
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:34 2012
NSEQ  16
EFFN  3.605469
CKSUM 3791217549
STATS LOCAL MSV       -7.3241  0.71932
STATS LOCAL VITERBI   -7.7948  0.71932
STATS LOCAL FORWARD   -4.2664  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47195  1.82456  1.19451  1.18292
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  0.00000        *
      1   0.13100  3.46667  2.85777  3.37664      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      2   3.17670  2.65106  3.22145  0.16511      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      3   0.13100  3.46667  2.85777  3.37664      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      4   3.17670  2.65106  3.22145  0.16511      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      5   3.17670  2.65106  3.22145  0.16511      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      6   3.53238  0.11897  3.57752  2.90072      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      7   0.13100  3.46667  2.85777  3.37664      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      8   2.85850  0.32833  2.92410  1.77901      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
      9   0.13100  3.46667  2.85777  3.37664      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     10   0.47160  2.71742  1.45125  2.58134     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     11   1.43022  2.74775  0.47311  2.60899     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     12   3.00689  3.67468  0.10808  3.58855     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     13   3.17670  2.65106  3.22145  0.16511     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     14   3.53238  0.11897  3.57752  2.90072     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     15   3.17670  2.65106  3.22145  0.16511     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     16   3.00689  3.67468  0.10808  3.58855     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     17   3.17670  2.65106  3.22145  0.16511     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     18   3.00689  3.67468  0.10808  3.58855     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     19   3.17670  2.65106  3.22145  0.16511     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     20   3.00689  3.67468  0.10808  3.58855     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     21   3.00689  3.67468  0.10808  3.58855     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     22   3.00689  3.67468  0.10808  3.58855     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     23   3.00689  3.67468  0.10808  3.58855     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     24   3.17670  2.65106  3.22145  0.16511     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     25   0.13100  3.46667  2.85777  3.37664     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     26   3.53238  0.11897  3.57752  2.90072     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     27   0.13100  3.46667  2.85777  3.37664     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     28   3.53238  0.11897  3.57752  2.90072     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     29   0.13100  3.46667  2.85777  3.37664     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     30   3.17670  2.65106  3.22145  0.16511     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     31   3.00689  3.67468  0.10808  3.58855     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     32   3.00689  3.67468  0.10808  3.58855     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     33   3.17670  2.65106  3.22145  0.16511     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     34   3.17670  2.65106  3.22145  0.16511     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     35   3.00689  3.67468  0.10808  3.58855     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     36   0.13100  3.46667  2.85777  3.37664     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     37   3.00689  3.67468  0.10808  3.58855     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     38   3.17670  2.65106  3.22145  0.16511     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     39   3.00689  3.67468  0.10808  3.58855     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     40   3.17670  2.65106  3.22145  0.16511     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     41   3.53238  0.11897  3.57752  2.90072     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     42   3.00689  3.67468  0.10808  3.58855     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     43   3.17670  2.65106  3.22145  0.16511     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     44   3.17670  2.65106  3.22145  0.16511     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03506  4.06139  4.06139  1.46634  0.26236  1.09861  0.40547
     45   0.13100  3.46667  2.85777  3.37664     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01768  4.04401        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fifty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:51:15 2012
NSEQ  2
EFFN  2.000000
CKSUM 1066684627
STATS LOCAL MSV       -7.5812  0.72751
STATS LOCAL VITERBI   -8.5194  0.72751
STATS LOCAL FORWARD   -3.2857  0.72751
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92302  1.24002  1.12282  1.43089
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:34:26 2012
NSEQ  15
EFFN  3.533936
CKSUM 1571947734
STATS LOCAL MSV       -7.1684  0.71932
STATS LOCAL VITERBI   -7.7256  0.71932
STATS LOCAL FORWARD   -4.1697  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65608  1.33859  1.13998  1.48248
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  0.00000        *
      1   2.99255  3.65360  0.11020  3.56520      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      2   3.50820  0.12160  3.55441  2.88335      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      3   3.50820  0.12160  3.55441  2.88335      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      4   2.10974  3.16236  0.23737  3.04268      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      5   3.15503  2.63732  3.20062  0.16833      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      6   0.13357  3.44557  2.84418  3.35349      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      7   2.99255  3.65360  0.11020  3.56520      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      8   2.99255  3.65360  0.11020  3.56520      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
      9   0.13357  3.44557  2.84418  3.35349      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     10   2.51458  2.79731  0.31083  2.07712     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     11   3.15503  2.63732  3.20062  0.16833     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     12   3.50820  0.12160  3.55441  2.88335     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     13   3.50820  0.12160  3.55441  2.88335     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     14   3.15503  2.63732  3.20062  0.16833     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     15   0.13357  3.44557  2.84418  3.35349     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     16   2.99970  0.26047  3.06184  2.01961     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     17   3.50820  0.12160  3.55441  2.88335     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     18   3.50820  0.12160  3.55441  2.88335     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     19   3.15503  2.63732  3.20062  0.16833     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     20   0.53351  2.65200  1.33972  2.51297     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     21   2.95831  0.27708  3.02151  1.95635     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     22   2.99255  3.65360  0.11020  3.56520     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     23   2.99255  3.65360  0.11020  3.56520     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     24   3.50820  0.12160  3.55441  2.88335     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     25   0.13357  3.44557  2.84418  3.35349     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     26   3.50820  0.12160  3.55441  2.88335     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     27   0.13357  3.44557  2.84418  3.35349     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     28   3.15503  2.63732  3.20062  0.16833     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     29   3.50820  0.12160  3.55441  2.88335     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     30   3.15503  2.63732  3.20062  0.16833     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     31   2.99255  3.65360  0.11020  3.56520     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     32   2.99255  3.65360  0.11020  3.56520     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     33   3.15503  2.63732  3.20062  0.16833     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     34   3.15503  2.63732  3.20062  0.16833     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     35   2.99255  3.65360  0.11020  3.56520     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     36   0.13357  3.44557  2.84418  3.35349     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     37   2.99255  3.65360  0.11020  3.56520     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     38   2.99255  3.65360  0.11020  3.56520     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     39   2.99255  3.65360  0.11020  3.56520     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     40   3.15503  2.63732  3.20062  0.16833     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     41   3.50820  0.12160  3.55441  2.88335     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     42   2.99255  3.65360  0.11020  3.56520     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     43   3.15503  2.63732  3.20062  0.16833     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     44   2.99255  3.65360  0.11020  3.56520     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04899  4.04899  1.46634  0.26236  1.09861  0.40547
     45   0.13357  3.44557  2.84418  3.35349     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01791  4.03139        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortya_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:07 2012
NSEQ  2
EFFN  2.000000
CKSUM 347263349
STATS LOCAL MSV       -7.4224  0.72886
STATS LOCAL VITERBI   -8.2750  0.72886
STATS LOCAL FORWARD   -3.5290  0.72886
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51640  1.56418  1.43422  1.09980
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:12 2012
NSEQ  21
EFFN  3.652954
CKSUM 2037448344
STATS LOCAL MSV       -7.7448  0.71932
STATS LOCAL VITERBI   -7.7103  0.71932
STATS LOCAL FORWARD   -4.4879  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34393  1.57885  1.68779  1.05544
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  0.00000        *
      1   3.54809  0.11729  3.59253  2.91198      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      2   0.12935  3.48040  2.86661  3.39172      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      3   2.63410  1.48888  2.69945  0.45358      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      4   3.01616  3.68835  0.10672  3.60370      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      5   3.01616  3.68835  0.10672  3.60370      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      6   0.12935  3.48040  2.86661  3.39172      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      7   3.54809  0.11729  3.59253  2.91198      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      8   0.12935  3.48040  2.86661  3.39172      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
      9   3.54809  0.11729  3.59253  2.91198      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     10   3.19086  2.66004  3.23506  0.16304     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     11   3.19086  2.66004  3.23506  0.16304     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     12   3.54809  0.11729  3.59253  2.91198     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     13   2.67383  2.44140  2.20688  0.30934     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     14   3.01616  3.68835  0.10672  3.60370     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     15   3.19086  2.66004  3.23506  0.16304     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     16   0.30858  2.96134  1.86288  2.83816     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     17   3.19086  2.66004  3.23506  0.16304     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     18   3.54809  0.11729  3.59253  2.91198     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     19   3.19086  2.66004  3.23506  0.16304     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     20   3.01616  3.68835  0.10672  3.60370     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     21   3.19086  2.66004  3.23506  0.16304     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     22   3.01616  3.68835  0.10672  3.60370     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     23   3.54809  0.11729  3.59253  2.91198     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     24   3.19086  2.66004  3.23506  0.16304     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     25   0.12935  3.48040  2.86661  3.39172     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     26   3.54809  0.11729  3.59253  2.91198     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     27   0.12935  3.48040  2.86661  3.39172     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     28   3.19086  2.66004  3.23506  0.16304     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     29   3.19086  2.66004  3.23506  0.16304     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     30   3.19086  2.66004  3.23506  0.16304     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     31   3.01616  3.68835  0.10672  3.60370     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     32   3.19086  2.66004  3.23506  0.16304     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     33   3.19086  2.66004  3.23506  0.16304     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     34   3.19086  2.66004  3.23506  0.16304     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     35   3.54809  0.11729  3.59253  2.91198     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     36   0.12935  3.48040  2.86661  3.39172     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     37   3.01616  3.68835  0.10672  3.60370     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     38   3.19086  2.66004  3.23506  0.16304     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     39   0.12935  3.48040  2.86661  3.39172     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     40   3.19086  2.66004  3.23506  0.16304     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     41   0.12935  3.48040  2.86661  3.39172     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     42   3.19086  2.66004  3.23506  0.16304     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     43   0.12935  3.48040  2.86661  3.39172     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     44   0.12935  3.48040  2.86661  3.39172     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03477  4.06953  4.06953  1.46634  0.26236  1.09861  0.40547
     45   0.12935  3.48040  2.86661  3.39172     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01754  4.05230        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:18 2012
NSEQ  2
EFFN  2.000000
CKSUM 1875509194
STATS LOCAL MSV       -7.4593  0.72883
STATS LOCAL VITERBI   -8.2848  0.72883
STATS LOCAL FORWARD   -3.4483  0.72883
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45589  1.50091  1.49628  1.13969
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 2094167418
STATS LOCAL MSV       -7.2815  0.72957
STATS LOCAL VITERBI   -8.1713  0.72957
STATS LOCAL FORWARD   -3.4471  0.72957
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21312  1.69555  1.55125  1.18009
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   1.01448  1.11006  1.95471  1.79419     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortye_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:29 2012
NSEQ  3
EFFN  3.000000
CKSUM 3941219966
STATS LOCAL MSV       -8.0155  0.72136
STATS LOCAL VITERBI   -7.9080  0.72136
STATS LOCAL FORWARD   -3.8167  0.72136
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38221  1.76473  1.47045  1.05577
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   1.34853  2.58976  0.54705  2.44542      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeighta_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:28 2012
NSEQ  24
EFFN  3.600586
CKSUM 339122880
STATS LOCAL MSV       -7.1812  0.71931
STATS LOCAL VITERBI   -7.6039  0.71931
STATS LOCAL FORWARD   -4.3803  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.90120  1.55283  1.08317  1.20250
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  0.00000        *
      1   2.67626  3.05106  0.22851  2.42866      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      2   3.00592  3.67326  0.10822  3.58698      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      3   3.53074  0.11914  3.57596  2.89955      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      4   3.00592  3.67326  0.10822  3.58698      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      5   3.53074  0.11914  3.57596  2.89955      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      6   3.17523  2.65013  3.22004  0.16532      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      7   3.53074  0.11914  3.57596  2.89955      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      8   3.17523  2.65013  3.22004  0.16532      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
      9   2.54397  0.59494  2.61524  1.21503      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     10   3.00592  3.67326  0.10822  3.58698     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     11   3.00592  3.67326  0.10822  3.58698     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     12   3.17523  2.65013  3.22004  0.16532     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     13   2.94163  2.11334  2.99577  0.25310     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     14   0.13117  3.46525  2.85686  3.37508     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     15   3.17523  2.65013  3.22004  0.16532     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     16   0.13117  3.46525  2.85686  3.37508     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     17   3.53074  0.11914  3.57596  2.89955     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     18   3.53074  0.11914  3.57596  2.89955     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     19   3.00592  3.67326  0.10822  3.58698     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     20   3.00592  3.67326  0.10822  3.58698     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     21   3.00592  3.67326  0.10822  3.58698     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     22   0.13117  3.46525  2.85686  3.37508     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     23   3.00592  3.67326  0.10822  3.58698     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     24   3.53074  0.11914  3.57596  2.89955     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     25   0.13117  3.46525  2.85686  3.37508     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     26   3.17523  2.65013  3.22004  0.16532     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     27   3.00592  3.67326  0.10822  3.58698     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     28   3.17523  2.65013  3.22004  0.16532     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     29   3.53074  0.11914  3.57596  2.89955     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     30   3.17523  2.65013  3.22004  0.16532     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     31   3.00592  3.67326  0.10822  3.58698     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     32   3.17523  2.65013  3.22004  0.16532     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     33   3.53074  0.11914  3.57596  2.89955     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     34   3.17523  2.65013  3.22004  0.16532     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     35   3.00592  3.67326  0.10822  3.58698     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     36   0.13117  3.46525  2.85686  3.37508     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     37   3.00592  3.67326  0.10822  3.58698     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     38   3.17523  2.65013  3.22004  0.16532     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     39   3.00592  3.67326  0.10822  3.58698     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     40   3.17523  2.65013  3.22004  0.16532     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     41   3.17523  2.65013  3.22004  0.16532     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     42   3.00592  3.67326  0.10822  3.58698     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     43   3.00592  3.67326  0.10822  3.58698     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     44   3.17523  2.65013  3.22004  0.16532     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03509  4.06054  4.06054  1.46634  0.26236  1.09861  0.40547
     45   1.27511  2.19060  2.26638  0.68307     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01770  4.04315        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeightb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:35 2012
NSEQ  2
EFFN  2.000000
CKSUM 3925285296
STATS LOCAL MSV       -7.6206  0.72748
STATS LOCAL VITERBI   -8.1867  0.72748
STATS LOCAL FORWARD   -3.4877  0.72748
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.83239  1.19294  1.16979  1.48630
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeightc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:39 2012
NSEQ  5
EFFN  3.159180
CKSUM 993596914
STATS LOCAL MSV       -8.2623  0.71933
STATS LOCAL VITERBI   -7.7665  0.71933
STATS LOCAL FORWARD   -4.2175  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92935  1.26519  1.09230  1.43915
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  0.00000        *
      1   2.90962  3.53288  0.12335  3.43193      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      2   2.90962  3.53288  0.12335  3.43193      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      3   3.37101  0.13787  3.42306  2.78357      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      4   2.90962  3.53288  0.12335  3.43193      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      5   3.37101  0.13787  3.42306  2.78357      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      6   3.03462  2.56074  3.08483  0.18763      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      7   3.37101  0.13787  3.42306  2.78357      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      8   3.03462  2.56074  3.08483  0.18763      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      9   3.37101  0.13787  3.42306  2.78357      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     10   2.90962  3.53288  0.12335  3.43193     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     11   2.90962  3.53288  0.12335  3.43193     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     12   3.03462  2.56074  3.08483  0.18763     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     13   3.37101  0.13787  3.42306  2.78357     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     14   0.14921  3.32646  2.76683  3.22308     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     15   0.14921  3.32646  2.76683  3.22308     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     16   2.90962  3.53288  0.12335  3.43193     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     17   3.37101  0.13787  3.42306  2.78357     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     18   3.37101  0.13787  3.42306  2.78357     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     19   2.90962  3.53288  0.12335  3.43193     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     20   2.90962  3.53288  0.12335  3.43193     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     21   2.90962  3.53288  0.12335  3.43193     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     22   0.14921  3.32646  2.76683  3.22308     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     23   2.90962  3.53288  0.12335  3.43193     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     24   3.37101  0.13787  3.42306  2.78357     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     25   0.14921  3.32646  2.76683  3.22308     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     26   3.37101  0.13787  3.42306  2.78357     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     27   2.90962  3.53288  0.12335  3.43193     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     28   3.03462  2.56074  3.08483  0.18763     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     29   3.37101  0.13787  3.42306  2.78357     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     30   3.03462  2.56074  3.08483  0.18763     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     31   2.90962  3.53288  0.12335  3.43193     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     32   3.03462  2.56074  3.08483  0.18763     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     33   3.37101  0.13787  3.42306  2.78357     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     34   3.03462  2.56074  3.08483  0.18763     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     35   2.90962  3.53288  0.12335  3.43193     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     36   0.14921  3.32646  2.76683  3.22308     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     37   2.90962  3.53288  0.12335  3.43193     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     38   3.37101  0.13787  3.42306  2.78357     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     39   2.90962  3.53288  0.12335  3.43193     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     40   3.03462  2.56074  3.08483  0.18763     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     41   3.37101  0.13787  3.42306  2.78357     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     42   3.03462  2.56074  3.08483  0.18763     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     43   2.90962  3.53288  0.12335  3.43193     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     44   3.03462  2.56074  3.08483  0.18763     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     45   3.03462  2.56074  3.08483  0.18763     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01920  3.96256        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeightd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:46 2012
NSEQ  4
EFFN  3.472656
CKSUM 2657486391
STATS LOCAL MSV       -7.5605  0.71932
STATS LOCAL VITERBI   -7.7169  0.71932
STATS LOCAL FORWARD   -4.4119  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.88361  1.29724  1.11506  1.39926
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  0.00000        *
      1   2.97992  3.63506  0.11211  3.54469      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      2   2.97992  3.63506  0.11211  3.54469      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      3   3.48700  0.12396  3.53414  2.86806      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      4   2.97992  3.63506  0.11211  3.54469      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      5   3.48700  0.12396  3.53414  2.86806      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      6   3.13614  2.62533  3.18246  0.17120      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      7   3.13614  2.62533  3.18246  0.17120      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      8   3.13614  2.62533  3.18246  0.17120      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      9   3.48700  0.12396  3.53414  2.86806      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     10   2.97992  3.63506  0.11211  3.54469     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     11   2.97992  3.63506  0.11211  3.54469     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     12   3.13614  2.62533  3.18246  0.17120     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     13   0.13586  3.42710  2.83226  3.33324     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     14   0.13586  3.42710  2.83226  3.33324     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     15   0.83642  2.54006  0.92443  2.39556     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     16   2.97992  3.63506  0.11211  3.54469     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     17   3.48700  0.12396  3.53414  2.86806     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     18   3.48700  0.12396  3.53414  2.86806     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     19   2.97992  3.63506  0.11211  3.54469     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     20   2.97992  3.63506  0.11211  3.54469     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     21   2.97992  3.63506  0.11211  3.54469     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     22   0.13586  3.42710  2.83226  3.33324     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     23   2.97992  3.63506  0.11211  3.54469     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     24   3.48700  0.12396  3.53414  2.86806     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     25   0.13586  3.42710  2.83226  3.33324     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     26   3.48700  0.12396  3.53414  2.86806     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     27   2.97992  3.63506  0.11211  3.54469     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     28   3.13614  2.62533  3.18246  0.17120     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     29   3.48700  0.12396  3.53414  2.86806     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     30   3.13614  2.62533  3.18246  0.17120     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     31   2.97992  3.63506  0.11211  3.54469     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     32   3.13614  2.62533  3.18246  0.17120     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     33   3.48700  0.12396  3.53414  2.86806     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     34   3.13614  2.62533  3.18246  0.17120     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     35   2.97992  3.63506  0.11211  3.54469     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     36   0.13586  3.42710  2.83226  3.33324     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     37   2.97992  3.63506  0.11211  3.54469     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     38   3.48700  0.12396  3.53414  2.86806     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     39   2.97992  3.63506  0.11211  3.54469     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     40   3.13614  2.62533  3.18246  0.17120     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     41   3.48700  0.12396  3.53414  2.86806     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     42   3.48700  0.12396  3.53414  2.86806     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     43   2.62567  1.55366  2.69076  0.43339     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     44   2.62567  1.55366  2.69076  0.43339     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     45   3.13614  2.62533  3.18246  0.17120     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01811  4.02046        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeighte_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:51 2012
NSEQ  8
EFFN  3.214844
CKSUM 964389477
STATS LOCAL MSV       -8.0488  0.71933
STATS LOCAL VITERBI   -7.8773  0.71933
STATS LOCAL FORWARD   -4.3191  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.19308  1.31777  1.09283  1.25376
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
      1   2.92285  3.55196  0.12115  3.45295      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      2   2.92285  3.55196  0.12115  3.45295      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      3   3.39256  0.13515  3.44371  2.79938      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      4   2.92285  3.55196  0.12115  3.45295      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      5   3.39256  0.13515  3.44371  2.79938      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      6   3.05326  2.57263  3.10276  0.18448      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      7   3.39256  0.13515  3.44371  2.79938      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      8   3.05326  2.57263  3.10276  0.18448      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      9   3.39256  0.13515  3.44371  2.79938      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     10   2.92285  3.55196  0.12115  3.45295     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     11   2.92285  3.55196  0.12115  3.45295     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     12   3.05326  2.57263  3.10276  0.18448     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     13   3.05326  2.57263  3.10276  0.18448     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     14   3.05326  2.57263  3.10276  0.18448     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     15   3.05326  2.57263  3.10276  0.18448     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     16   2.92285  3.55196  0.12115  3.45295     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     17   3.39256  0.13515  3.44371  2.79938     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     18   3.39256  0.13515  3.44371  2.79938     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     19   2.92285  3.55196  0.12115  3.45295     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     20   2.92285  3.55196  0.12115  3.45295     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     21   2.92285  3.55196  0.12115  3.45295     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     22   0.14663  3.34511  2.77903  3.24347     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     23   2.92285  3.55196  0.12115  3.45295     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     24   3.39256  0.13515  3.44371  2.79938     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     25   0.14663  3.34511  2.77903  3.24347     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     26   3.39256  0.13515  3.44371  2.79938     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     27   2.92285  3.55196  0.12115  3.45295     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     28   3.05326  2.57263  3.10276  0.18448     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     29   3.39256  0.13515  3.44371  2.79938     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     30   3.05326  2.57263  3.10276  0.18448     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     31   2.92285  3.55196  0.12115  3.45295     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     32   3.05326  2.57263  3.10276  0.18448     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     33   3.39256  0.13515  3.44371  2.79938     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     34   3.05326  2.57263  3.10276  0.18448     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     35   2.92285  3.55196  0.12115  3.45295     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     36   0.14663  3.34511  2.77903  3.24347     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     37   2.92285  3.55196  0.12115  3.45295     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     38   3.39256  0.13515  3.44371  2.79938     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     39   2.92285  3.55196  0.12115  3.45295     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     40   3.05326  2.57263  3.10276  0.18448     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     41   3.05326  2.57263  3.10276  0.18448     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     42   3.39256  0.13515  3.44371  2.79938     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     43   2.92285  3.55196  0.12115  3.45295     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     44   3.05326  2.57263  3.10276  0.18448     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     45   3.05326  2.57263  3.10276  0.18448     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyeightf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:56 2012
NSEQ  11
EFFN  3.316650
CKSUM 2204535920
STATS LOCAL MSV       -8.0261  0.71932
STATS LOCAL VITERBI   -7.9269  0.71932
STATS LOCAL FORWARD   -4.2355  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.86940  1.25480  1.19492  1.35510
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
      1   2.94618  3.58579  0.11737  3.49026      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      2   2.94618  3.58579  0.11737  3.49026      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      3   3.43088  0.13047  3.48043  2.82738      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      4   2.94618  3.58579  0.11737  3.49026      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      5   3.43088  0.13047  3.48043  2.82738      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      6   3.08666  2.59390  3.13489  0.17899      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      7   3.43088  0.13047  3.48043  2.82738      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      8   3.08666  2.59390  3.13489  0.17899      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      9   3.43088  0.13047  3.48043  2.82738      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     10   2.94618  3.58579  0.11737  3.49026     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     11   2.94618  3.58579  0.11737  3.49026     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     12   3.08666  2.59390  3.13489  0.17899     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     13   3.08666  2.59390  3.13489  0.17899     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     14   3.08666  2.59390  3.13489  0.17899     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     15   3.43088  0.13047  3.48043  2.82738     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     16   0.14215  3.37833  2.80067  3.27981     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     17   3.43088  0.13047  3.48043  2.82738     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     18   3.43088  0.13047  3.48043  2.82738     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     19   2.94618  3.58579  0.11737  3.49026     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     20   2.94618  3.58579  0.11737  3.49026     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     21   2.94618  3.58579  0.11737  3.49026     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     22   0.14215  3.37833  2.80067  3.27981     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     23   2.94618  3.58579  0.11737  3.49026     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     24   3.43088  0.13047  3.48043  2.82738     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     25   0.14215  3.37833  2.80067  3.27981     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     26   3.43088  0.13047  3.48043  2.82738     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     27   2.94618  3.58579  0.11737  3.49026     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     28   3.08666  2.59390  3.13489  0.17899     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     29   3.43088  0.13047  3.48043  2.82738     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     30   3.08666  2.59390  3.13489  0.17899     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     31   2.94618  3.58579  0.11737  3.49026     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     32   3.08666  2.59390  3.13489  0.17899     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     33   3.43088  0.13047  3.48043  2.82738     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     34   3.08666  2.59390  3.13489  0.17899     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     35   2.94618  3.58579  0.11737  3.49026     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     36   0.14215  3.37833  2.80067  3.27981     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     37   2.94618  3.58579  0.11737  3.49026     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     38   3.43088  0.13047  3.48043  2.82738     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     39   0.14215  3.37833  2.80067  3.27981     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     40   3.08666  2.59390  3.13489  0.17899     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     41   3.08666  2.59390  3.13489  0.17899     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     42   3.43088  0.13047  3.48043  2.82738     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     43   2.94618  3.58579  0.11737  3.49026     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     44   0.57713  2.32692  2.24167  1.44981     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     45   3.08666  2.59390  3.13489  0.17899     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:50 2012
NSEQ  4
EFFN  3.167969
CKSUM 3104217627
STATS LOCAL MSV       -8.1787  0.71934
STATS LOCAL VITERBI   -7.9801  0.71934
STATS LOCAL FORWARD   -3.9468  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.19556  1.04296  1.09808  1.59562
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  0.00000        *
      1   3.37444  0.13743  3.42635  2.78609      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      2   2.91173  3.53592  0.12299  3.43528      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      3   3.37444  0.13743  3.42635  2.78609      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      4   2.56050  1.56301  2.62680  0.44485      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      5   3.37444  0.13743  3.42635  2.78609      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      6   3.37444  0.13743  3.42635  2.78609      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      7   3.37444  0.13743  3.42635  2.78609      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      8   2.91173  3.53592  0.12299  3.43528      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
      9   2.91173  3.53592  0.12299  3.43528      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     10   2.91173  3.53592  0.12299  3.43528     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     11   2.91173  3.53592  0.12299  3.43528     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     12   3.03758  2.56263  3.08768  0.18713     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     13   3.37444  0.13743  3.42635  2.78609     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     14   3.03758  2.56263  3.08768  0.18713     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     15   3.37444  0.13743  3.42635  2.78609     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     16   3.37444  0.13743  3.42635  2.78609     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     17   3.03758  2.56263  3.08768  0.18713     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     18   3.37444  0.13743  3.42635  2.78609     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     19   2.91173  3.53592  0.12299  3.43528     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     20   2.91173  3.53592  0.12299  3.43528     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     21   2.91173  3.53592  0.12299  3.43528     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     22   0.14880  3.32943  2.76878  3.22633     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     23   2.91173  3.53592  0.12299  3.43528     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     24   3.37444  0.13743  3.42635  2.78609     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     25   0.14880  3.32943  2.76878  3.22633     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     26   2.91173  3.53592  0.12299  3.43528     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     27   2.91173  3.53592  0.12299  3.43528     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     28   3.03758  2.56263  3.08768  0.18713     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     29   3.37444  0.13743  3.42635  2.78609     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     30   3.03758  2.56263  3.08768  0.18713     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     31   2.91173  3.53592  0.12299  3.43528     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     32   3.03758  2.56263  3.08768  0.18713     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     33   3.37444  0.13743  3.42635  2.78609     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     34   3.37444  0.13743  3.42635  2.78609     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     35   2.91173  3.53592  0.12299  3.43528     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     36   0.14880  3.32943  2.76878  3.22633     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     37   2.91173  3.53592  0.12299  3.43528     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     38   3.37444  0.13743  3.42635  2.78609     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     39   2.91173  3.53592  0.12299  3.43528     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     40   3.03758  2.56263  3.08768  0.18713     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     41   3.37444  0.13743  3.42635  2.78609     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     42   3.03758  2.56263  3.08768  0.18713     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     43   2.91173  3.53592  0.12299  3.43528     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     44   3.37444  0.13743  3.42635  2.78609     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98303  3.98303  1.46634  0.26236  1.09861  0.40547
     45   3.37444  0.13743  3.42635  2.78609     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01917  3.96423        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:38 2012
NSEQ  6
EFFN  3.161133
CKSUM 3736386509
STATS LOCAL MSV       -7.9213  0.71932
STATS LOCAL VITERBI   -7.8583  0.71932
STATS LOCAL FORWARD   -3.8470  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92961  1.26295  1.09548  1.43717
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  0.00000        *
      1   3.37178  0.13777  3.42379  2.78413      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      2   3.03528  2.56116  3.08546  0.18752      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      3   3.37178  0.13777  3.42379  2.78413      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      4   3.03528  2.56116  3.08546  0.18752      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      5   3.37178  0.13777  3.42379  2.78413      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      6   2.91009  3.53355  0.12327  3.43268      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      7   2.91009  3.53355  0.12327  3.43268      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      8   2.91009  3.53355  0.12327  3.43268      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
      9   3.37178  0.13777  3.42379  2.78413      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     10   3.37178  0.13777  3.42379  2.78413     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     11   3.37178  0.13777  3.42379  2.78413     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     12   3.03528  2.56116  3.08546  0.18752     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     13   2.91009  3.53355  0.12327  3.43268     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     14   2.91009  3.53355  0.12327  3.43268     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     15   3.03528  2.56116  3.08546  0.18752     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     16   3.37178  0.13777  3.42379  2.78413     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     17   3.37178  0.13777  3.42379  2.78413     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     18   3.37178  0.13777  3.42379  2.78413     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     19   2.91009  3.53355  0.12327  3.43268     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     20   2.91009  3.53355  0.12327  3.43268     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     21   2.91009  3.53355  0.12327  3.43268     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     22   0.14912  3.32712  2.76727  3.22381     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     23   2.91009  3.53355  0.12327  3.43268     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     24   3.37178  0.13777  3.42379  2.78413     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     25   0.14912  3.32712  2.76727  3.22381     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     26   3.03528  2.56116  3.08546  0.18752     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     27   2.91009  3.53355  0.12327  3.43268     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     28   3.03528  2.56116  3.08546  0.18752     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     29   3.37178  0.13777  3.42379  2.78413     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     30   3.03528  2.56116  3.08546  0.18752     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     31   2.91009  3.53355  0.12327  3.43268     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     32   3.03528  2.56116  3.08546  0.18752     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     33   3.37178  0.13777  3.42379  2.78413     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     34   3.03528  2.56116  3.08546  0.18752     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     35   2.91009  3.53355  0.12327  3.43268     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     36   0.14912  3.32712  2.76727  3.22381     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     37   2.91009  3.53355  0.12327  3.43268     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     38   2.91009  3.53355  0.12327  3.43268     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     39   2.91009  3.53355  0.12327  3.43268     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     40   3.03528  2.56116  3.08546  0.18752     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     41   3.37178  0.13777  3.42379  2.78413     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     42   2.91009  3.53355  0.12327  3.43268     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     43   0.14912  3.32712  2.76727  3.22381     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     44   0.14912  3.32712  2.76727  3.22381     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03802  3.98176  3.98176  1.46634  0.26236  1.09861  0.40547
     45   3.03528  2.56116  3.08546  0.18752     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01919  3.96293        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:51:08 2012
NSEQ  15
EFFN  3.211670
CKSUM 3750062705
STATS LOCAL MSV       -8.2153  0.71932
STATS LOCAL VITERBI   -7.8337  0.71932
STATS LOCAL FORWARD   -4.0703  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05372  1.19574  1.09436  1.45026
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  0.00000        *
      1   3.39134  0.13530  3.44255  2.79849      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      2   2.92210  3.55089  0.12127  3.45176      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      3   3.39134  0.13530  3.44255  2.79849      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      4   3.39134  0.13530  3.44255  2.79849      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      5   3.39134  0.13530  3.44255  2.79849      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      6   3.05221  2.57196  3.10175  0.18466      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      7   3.39134  0.13530  3.44255  2.79849      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      8   2.92210  3.55089  0.12127  3.45176      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
      9   2.92210  3.55089  0.12127  3.45176      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     10   3.05221  2.57196  3.10175  0.18466     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     11   3.05221  2.57196  3.10175  0.18466     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     12   2.64062  1.70487  2.70448  0.38569     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     13   2.92210  3.55089  0.12127  3.45176     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     14   0.14677  3.34406  2.77834  3.24231     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     15   0.14677  3.34406  2.77834  3.24231     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     16   2.92210  3.55089  0.12127  3.45176     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     17   3.39134  0.13530  3.44255  2.79849     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     18   3.39134  0.13530  3.44255  2.79849     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     19   2.92210  3.55089  0.12127  3.45176     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     20   2.92210  3.55089  0.12127  3.45176     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     21   2.92210  3.55089  0.12127  3.45176     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     22   2.92210  3.55089  0.12127  3.45176     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     23   2.92210  3.55089  0.12127  3.45176     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     24   3.39134  0.13530  3.44255  2.79849     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     25   0.14677  3.34406  2.77834  3.24231     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     26   3.39134  0.13530  3.44255  2.79849     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     27   2.92210  3.55089  0.12127  3.45176     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     28   3.05221  2.57196  3.10175  0.18466     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     29   3.39134  0.13530  3.44255  2.79849     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     30   3.05221  2.57196  3.10175  0.18466     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     31   2.92210  3.55089  0.12127  3.45176     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     32   3.05221  2.57196  3.10175  0.18466     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     33   3.39134  0.13530  3.44255  2.79849     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     34   3.05221  2.57196  3.10175  0.18466     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     35   2.92210  3.55089  0.12127  3.45176     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     36   0.14677  3.34406  2.77834  3.24231     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     37   2.92210  3.55089  0.12127  3.45176     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     38   3.39134  0.13530  3.44255  2.79849     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     39   2.92210  3.55089  0.12127  3.45176     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     40   3.05221  2.57196  3.10175  0.18466     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     41   3.39134  0.13530  3.44255  2.79849     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     42   3.39134  0.13530  3.44255  2.79849     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     43   2.92210  3.55089  0.12127  3.45176     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     44   3.05221  2.57196  3.10175  0.18466     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03766  3.99114  3.99114  1.46634  0.26236  1.09861  0.40547
     45   3.05221  2.57196  3.10175  0.18466     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01901  3.97249        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:44 2012
NSEQ  2
EFFN  2.000000
CKSUM 3351881953
STATS LOCAL MSV       -7.4836  0.72751
STATS LOCAL VITERBI   -8.3118  0.72751
STATS LOCAL FORWARD   -3.4363  0.72751
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92284  1.23828  1.12440  1.43096
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:45:56 2012
NSEQ  68
EFFN  3.523682
CKSUM 178105420
STATS LOCAL MSV       -7.2532  0.71932
STATS LOCAL VITERBI   -7.8642  0.71932
STATS LOCAL FORWARD   -3.8274  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.33793  1.03819  1.08795  1.54895
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  0.00000        *
      1   3.50468  0.12199  3.55105  2.88082      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      2   2.99046  3.65053  0.11052  3.56181      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      3   2.99046  3.65053  0.11052  3.56181      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      4   3.50468  0.12199  3.55105  2.88082      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      5   3.50468  0.12199  3.55105  2.88082      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      6   3.50468  0.12199  3.55105  2.88082      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      7   3.50468  0.12199  3.55105  2.88082      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      8   2.99046  3.65053  0.11052  3.56181      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
      9   2.99046  3.65053  0.11052  3.56181      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     10   2.99046  3.65053  0.11052  3.56181     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     11   3.15189  2.63533  3.19760  0.16881     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     12   2.44366  0.84925  2.51567  0.90483     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     13   2.09412  0.42212  2.19206  2.21199     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     14   3.50468  0.12199  3.55105  2.88082     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     15   3.15189  2.63533  3.19760  0.16881     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     16   3.50468  0.12199  3.55105  2.88082     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     17   3.50468  0.12199  3.55105  2.88082     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     18   3.50468  0.12199  3.55105  2.88082     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     19   2.99046  3.65053  0.11052  3.56181     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     20   2.99046  3.65053  0.11052  3.56181     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     21   2.99046  3.65053  0.11052  3.56181     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     22   2.99046  3.65053  0.11052  3.56181     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     23   3.50468  0.12199  3.55105  2.88082     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     24   3.15189  2.63533  3.19760  0.16881     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     25   0.13394  3.44251  2.84220  3.35013     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     26   3.50468  0.12199  3.55105  2.88082     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     27   2.99046  3.65053  0.11052  3.56181     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     28   2.92172  0.23620  2.53930  2.55598     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     29   3.50468  0.12199  3.55105  2.88082     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     30   3.15189  2.63533  3.19760  0.16881     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     31   2.99046  3.65053  0.11052  3.56181     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     32   3.15189  2.63533  3.19760  0.16881     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     33   3.34624  0.15613  3.39785  2.57846     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     34   3.15189  2.63533  3.19760  0.16881     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     35   2.20651  3.22353  0.21643  3.10742     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     36   0.13394  3.44251  2.84220  3.35013     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     37   2.99046  3.65053  0.11052  3.56181     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     38   2.99046  3.65053  0.11052  3.56181     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     39   2.99046  3.65053  0.11052  3.56181     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     40   3.15189  2.63533  3.19760  0.16881     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     41   3.50468  0.12199  3.55105  2.88082     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     42   2.99046  3.65053  0.11052  3.56181     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     43   3.50468  0.12199  3.55105  2.88082     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     44   3.15189  2.63533  3.19760  0.16881     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03557  4.04720  4.04720  1.46634  0.26236  1.09861  0.40547
     45   1.98377  2.36627  2.60703  0.36404     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01794  4.02957        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:22 2012
NSEQ  3
EFFN  3.000000
CKSUM 2629441741
STATS LOCAL MSV       -7.8868  0.72036
STATS LOCAL VITERBI   -7.8389  0.72036
STATS LOCAL FORWARD   -3.5128  0.72036
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.79123  1.15229  1.19955  1.53246
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   1.31633  2.11286  2.18717  0.69564     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:29 2012
NSEQ  8
EFFN  3.199219
CKSUM 1510523105
STATS LOCAL MSV       -8.0942  0.71931
STATS LOCAL VITERBI   -7.7144  0.71931
STATS LOCAL FORWARD   -3.8492  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92718  1.19573  1.04178  1.61378
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
      1   3.38655  0.13590  3.43796  2.79498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      2   2.91917  3.54665  0.12176  3.44709      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      3   2.91917  3.54665  0.12176  3.44709      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      4   3.38655  0.13590  3.43796  2.79498      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      5   3.38655  0.13590  3.43796  2.79498      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      6   3.04806  2.56931  3.09775  0.18535      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      7   3.38655  0.13590  3.43796  2.79498      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      8   2.91917  3.54665  0.12176  3.44709      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      9   2.91917  3.54665  0.12176  3.44709      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     10   2.91917  3.54665  0.12176  3.44709     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     11   3.04806  2.56931  3.09775  0.18535     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     12   0.14734  3.33991  2.77563  3.23778     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     13   0.14734  3.33991  2.77563  3.23778     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     14   3.38655  0.13590  3.43796  2.79498     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     15   3.04806  2.56931  3.09775  0.18535     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     16   3.38655  0.13590  3.43796  2.79498     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     17   3.38655  0.13590  3.43796  2.79498     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     18   3.38655  0.13590  3.43796  2.79498     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     19   2.91917  3.54665  0.12176  3.44709     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     20   0.14734  3.33991  2.77563  3.23778     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     21   2.91917  3.54665  0.12176  3.44709     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     22   2.91917  3.54665  0.12176  3.44709     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     23   3.38655  0.13590  3.43796  2.79498     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     24   3.38655  0.13590  3.43796  2.79498     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     25   0.14734  3.33991  2.77563  3.23778     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     26   3.38655  0.13590  3.43796  2.79498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     27   2.91917  3.54665  0.12176  3.44709     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     28   3.04806  2.56931  3.09775  0.18535     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     29   3.38655  0.13590  3.43796  2.79498     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     30   3.04806  2.56931  3.09775  0.18535     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     31   2.91917  3.54665  0.12176  3.44709     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     32   3.04806  2.56931  3.09775  0.18535     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     33   3.38655  0.13590  3.43796  2.79498     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     34   3.04806  2.56931  3.09775  0.18535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     35   2.91917  3.54665  0.12176  3.44709     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     36   0.14734  3.33991  2.77563  3.23778     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     37   2.91917  3.54665  0.12176  3.44709     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     38   2.91917  3.54665  0.12176  3.44709     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     39   2.91917  3.54665  0.12176  3.44709     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     40   3.04806  2.56931  3.09775  0.18535     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     41   3.38655  0.13590  3.43796  2.79498     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     42   2.91917  3.54665  0.12176  3.44709     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     43   2.91917  3.54665  0.12176  3.44709     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     44   2.43829  1.24940  2.50849  0.60766     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     45   2.91917  3.54665  0.12176  3.44709     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:34 2012
NSEQ  8
EFFN  3.300781
CKSUM 1006154723
STATS LOCAL MSV       -8.1502  0.71931
STATS LOCAL VITERBI   -7.8569  0.71931
STATS LOCAL FORWARD   -3.8991  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.19096  1.09950  0.99259  1.68991
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  0.00000        *
      1   3.42500  0.13118  3.47480  2.82309      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      2   2.94261  3.58061  0.11794  3.48454      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      3   2.94261  3.58061  0.11794  3.48454      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      4   3.42500  0.13118  3.47480  2.82309      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      5   2.58757  1.55569  2.65338  0.44108      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      6   3.42500  0.13118  3.47480  2.82309      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      7   3.42500  0.13118  3.47480  2.82309      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      8   2.94261  3.58061  0.11794  3.48454      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
      9   2.94261  3.58061  0.11794  3.48454      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     10   2.94261  3.58061  0.11794  3.48454     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     11   3.08151  2.59063  3.12994  0.17982     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     12   3.42500  0.13118  3.47480  2.82309     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     13   0.14283  3.37323  2.79735  3.27422     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     14   2.63568  0.44340  2.70558  1.51574     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     15   3.08151  2.59063  3.12994  0.17982     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     16   3.42500  0.13118  3.47480  2.82309     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     17   3.42500  0.13118  3.47480  2.82309     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     18   3.42500  0.13118  3.47480  2.82309     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     19   2.94261  3.58061  0.11794  3.48454     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     20   2.94261  3.58061  0.11794  3.48454     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     21   2.94261  3.58061  0.11794  3.48454     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     22   2.94261  3.58061  0.11794  3.48454     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     23   3.42500  0.13118  3.47480  2.82309     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     24   3.42500  0.13118  3.47480  2.82309     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     25   0.14283  3.37323  2.79735  3.27422     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     26   3.42500  0.13118  3.47480  2.82309     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     27   2.94261  3.58061  0.11794  3.48454     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     28   2.58757  1.55569  2.65338  0.44108     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     29   3.42500  0.13118  3.47480  2.82309     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     30   3.08151  2.59063  3.12994  0.17982     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     31   2.94261  3.58061  0.11794  3.48454     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     32   3.08151  2.59063  3.12994  0.17982     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     33   3.42500  0.13118  3.47480  2.82309     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     34   3.08151  2.59063  3.12994  0.17982     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     35   2.94261  3.58061  0.11794  3.48454     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     36   0.14283  3.37323  2.79735  3.27422     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     37   2.94261  3.58061  0.11794  3.48454     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     38   2.94261  3.58061  0.11794  3.48454     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     39   2.94261  3.58061  0.11794  3.48454     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     40   3.08151  2.59063  3.12994  0.17982     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     41   3.42500  0.13118  3.47480  2.82309     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     42   2.94261  3.58061  0.11794  3.48454     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     43   2.94261  3.58061  0.11794  3.48454     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     44   3.42500  0.13118  3.47480  2.82309     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03704  4.00748  4.00748  1.46634  0.26236  1.09861  0.40547
     45   2.94261  3.58061  0.11794  3.48454     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98913        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoneg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:39 2012
NSEQ  3
EFFN  3.000000
CKSUM 2752023140
STATS LOCAL MSV       -8.0112  0.71987
STATS LOCAL VITERBI   -7.8601  0.71987
STATS LOCAL FORWARD   -4.0646  0.71987
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04242  1.15565  1.09893  1.50414
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoneh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:46 2012
NSEQ  11
EFFN  3.370361
CKSUM 3371393112
STATS LOCAL MSV       -7.2193  0.71933
STATS LOCAL VITERBI   -7.8016  0.71933
STATS LOCAL FORWARD   -4.0798  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.99517  1.04017  1.08680  1.75262
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  0.00000        *
      1   3.45055  0.12815  3.49927  2.84168      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      2   2.95806  3.60310  0.11549  3.50937      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      3   2.95806  3.60310  0.11549  3.50937      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      4   3.45055  0.12815  3.49927  2.84168      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      5   2.42298  1.04864  2.49442  0.73734      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      6   3.45055  0.12815  3.49927  2.84168      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      7   2.80636  0.33742  2.87302  1.77528      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      8   2.95806  3.60310  0.11549  3.50937      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
      9   2.95806  3.60310  0.11549  3.50937      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     10   2.95806  3.60310  0.11549  3.50937     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     11   3.10392  2.60488  3.15149  0.17623     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     12   3.45055  0.12815  3.49927  2.84168     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     13   0.13991  3.39541  2.81175  3.29851     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     14   3.45055  0.12815  3.49927  2.84168     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     15   3.10392  2.60488  3.15149  0.17623     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     16   3.45055  0.12815  3.49927  2.84168     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     17   3.45055  0.12815  3.49927  2.84168     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     18   3.45055  0.12815  3.49927  2.84168     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     19   2.95806  3.60310  0.11549  3.50937     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     20   2.95806  3.60310  0.11549  3.50937     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     21   0.13991  3.39541  2.81175  3.29851     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     22   2.95806  3.60310  0.11549  3.50937     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     23   3.45055  0.12815  3.49927  2.84168     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     24   3.45055  0.12815  3.49927  2.84168     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     25   0.13991  3.39541  2.81175  3.29851     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     26   3.45055  0.12815  3.49927  2.84168     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     27   2.95806  3.60310  0.11549  3.50937     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     28   3.45055  0.12815  3.49927  2.84168     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     29   3.45055  0.12815  3.49927  2.84168     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     30   3.10392  2.60488  3.15149  0.17623     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     31   2.95806  3.60310  0.11549  3.50937     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     32   3.10392  2.60488  3.15149  0.17623     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     33   3.45055  0.12815  3.49927  2.84168     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     34   3.10392  2.60488  3.15149  0.17623     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     35   2.95806  3.60310  0.11549  3.50937     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     36   0.13991  3.39541  2.81175  3.29851     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     37   2.95806  3.60310  0.11549  3.50937     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     38   2.95806  3.60310  0.11549  3.50937     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     39   2.95806  3.60310  0.11549  3.50937     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     40   3.10392  2.60488  3.15149  0.17623     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     41   3.45055  0.12815  3.49927  2.84168     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     42   2.95806  3.60310  0.11549  3.50937     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     43   2.95806  3.60310  0.11549  3.50937     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     44   3.45055  0.12815  3.49927  2.84168     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03656  4.02004  4.02004  1.46634  0.26236  1.09861  0.40547
     45   0.72443  2.22589  2.18730  1.22007     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01845  4.00193        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:51 2012
NSEQ  4
EFFN  3.253906
CKSUM 2638254345
STATS LOCAL MSV       -7.9634  0.71932
STATS LOCAL VITERBI   -7.8088  0.71932
STATS LOCAL FORWARD   -4.1822  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.00216  1.20315  1.07261  1.50239
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  0.00000        *
      1   3.40742  0.13331  3.45796  2.81026      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      2   2.93193  3.56511  0.11967  3.46744      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      3   2.93193  3.56511  0.11967  3.46744      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      4   3.40742  0.13331  3.45796  2.81026      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      5   3.06618  2.58087  3.11519  0.18233      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      6   3.06618  2.58087  3.11519  0.18233      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      7   3.06618  2.58087  3.11519  0.18233      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      8   2.93193  3.56511  0.11967  3.46744      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
      9   2.93193  3.56511  0.11967  3.46744      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     10   2.93193  3.56511  0.11967  3.46744     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     11   3.06618  2.58087  3.11519  0.18233     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     12   3.40742  0.13331  3.45796  2.81026     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     13   0.14487  3.35799  2.78743  3.25755     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     14   3.40742  0.13331  3.45796  2.81026     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     15   3.06618  2.58087  3.11519  0.18233     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     16   3.40742  0.13331  3.45796  2.81026     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     17   3.40742  0.13331  3.45796  2.81026     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     18   3.40742  0.13331  3.45796  2.81026     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     19   2.93193  3.56511  0.11967  3.46744     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     20   0.86439  2.50382  0.91051  2.35812     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     21   0.14487  3.35799  2.78743  3.25755     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     22   2.93193  3.56511  0.11967  3.46744     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     23   3.40742  0.13331  3.45796  2.81026     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     24   3.40742  0.13331  3.45796  2.81026     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     25   0.14487  3.35799  2.78743  3.25755     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     26   3.40742  0.13331  3.45796  2.81026     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     27   2.93193  3.56511  0.11967  3.46744     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     28   3.40742  0.13331  3.45796  2.81026     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     29   3.40742  0.13331  3.45796  2.81026     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     30   3.06618  2.58087  3.11519  0.18233     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     31   2.93193  3.56511  0.11967  3.46744     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     32   3.06618  2.58087  3.11519  0.18233     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     33   3.40742  0.13331  3.45796  2.81026     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     34   3.06618  2.58087  3.11519  0.18233     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     35   2.93193  3.56511  0.11967  3.46744     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     36   0.14487  3.35799  2.78743  3.25755     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     37   2.93193  3.56511  0.11967  3.46744     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     38   2.93193  3.56511  0.11967  3.46744     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     39   2.93193  3.56511  0.11967  3.46744     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     40   3.06618  2.58087  3.11519  0.18233     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     41   3.40742  0.13331  3.45796  2.81026     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     42   2.93193  3.56511  0.11967  3.46744     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     43   2.93193  3.56511  0.11967  3.46744     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     44   3.06618  2.58087  3.11519  0.18233     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03736  3.99892  3.99892  1.46634  0.26236  1.09861  0.40547
     45   2.93193  3.56511  0.11967  3.46744     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01885  3.98041        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:46:56 2012
NSEQ  2
EFFN  2.000000
CKSUM 4204561327
STATS LOCAL MSV       -7.3459  0.72810
STATS LOCAL VITERBI   -8.2466  0.72810
STATS LOCAL FORWARD   -3.4606  0.72810
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82402  1.11829  1.12097  1.68296
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.15554  1.00938  2.23102  0.88601      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.15554  1.00938  2.23102  0.88601     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:03 2012
NSEQ  2
EFFN  2.000000
CKSUM 1792586209
STATS LOCAL MSV       -7.4246  0.72709
STATS LOCAL VITERBI   -8.3745  0.72709
STATS LOCAL FORWARD   -3.2313  0.72709
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92710  1.15123  1.08134  1.61425
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:08 2012
NSEQ  47
EFFN  3.278870
CKSUM 1171561476
STATS LOCAL MSV       -7.9855  0.71932
STATS LOCAL VITERBI   -7.7310  0.71932
STATS LOCAL FORWARD   -3.7739  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.09004  1.00197  1.05220  1.83263
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  0.00000        *
      1   3.41682  0.13217  3.46697  2.81712      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      2   2.93765  3.57340  0.11874  3.47658      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      3   2.93765  3.57340  0.11874  3.47658      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      4   3.41682  0.13217  3.46697  2.81712      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      5   3.41682  0.13217  3.46697  2.81712      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      6   3.07437  2.58608  3.12307  0.18099      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      7   3.41682  0.13217  3.46697  2.81712      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      8   2.93765  3.57340  0.11874  3.47658      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
      9   2.93765  3.57340  0.11874  3.47658      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     10   2.93765  3.57340  0.11874  3.47658     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     11   3.07437  2.58608  3.12307  0.18099     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     12   3.41682  0.13217  3.46697  2.81712     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     13   3.41682  0.13217  3.46697  2.81712     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     14   1.00314  2.52316  0.77589  2.37760     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     15   3.07437  2.58608  3.12307  0.18099     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     16   3.41682  0.13217  3.46697  2.81712     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     17   3.41682  0.13217  3.46697  2.81712     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     18   3.41682  0.13217  3.46697  2.81712     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     19   2.93765  3.57340  0.11874  3.47658     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     20   0.14377  3.36613  2.79274  3.26646     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     21   2.93765  3.57340  0.11874  3.47658     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     22   2.93765  3.57340  0.11874  3.47658     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     23   3.41682  0.13217  3.46697  2.81712     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     24   3.41682  0.13217  3.46697  2.81712     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     25   0.14377  3.36613  2.79274  3.26646     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     26   3.41682  0.13217  3.46697  2.81712     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     27   2.93765  3.57340  0.11874  3.47658     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     28   3.41682  0.13217  3.46697  2.81712     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     29   3.41682  0.13217  3.46697  2.81712     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     30   3.41682  0.13217  3.46697  2.81712     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     31   2.93765  3.57340  0.11874  3.47658     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     32   3.07437  2.58608  3.12307  0.18099     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     33   3.41682  0.13217  3.46697  2.81712     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     34   3.07437  2.58608  3.12307  0.18099     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     35   2.93765  3.57340  0.11874  3.47658     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     36   0.14377  3.36613  2.79274  3.26646     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     37   2.93765  3.57340  0.11874  3.47658     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     38   2.93765  3.57340  0.11874  3.47658     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     39   2.93765  3.57340  0.11874  3.47658     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     40   3.07437  2.58608  3.12307  0.18099     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     41   3.41682  0.13217  3.46697  2.81712     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     42   2.93765  3.57340  0.11874  3.47658     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     43   2.93765  3.57340  0.11874  3.47658     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     44   3.41682  0.13217  3.46697  2.81712     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00348  4.00348  1.46634  0.26236  1.09861  0.40547
     45   0.83989  2.50807  0.93487  2.36258     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98506        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:14 2012
NSEQ  15
EFFN  3.101807
CKSUM 122630504
STATS LOCAL MSV       -8.1264  0.71934
STATS LOCAL VITERBI   -7.7491  0.71934
STATS LOCAL FORWARD   -3.9428  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04999  1.15617  1.04738  1.58125
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  0.00000        *
      1   3.34837  0.14079  3.40133  2.76688      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      2   2.89562  3.51276  0.12571  3.40979      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      3   2.89562  3.51276  0.12571  3.40979      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      4   3.34837  0.14079  3.40133  2.76688      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      5   3.34837  0.14079  3.40133  2.76688      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      6   3.01512  2.54827  3.06606  0.19099      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      7   3.34837  0.14079  3.40133  2.76688      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      8   2.89562  3.51276  0.12571  3.40979      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
      9   2.89562  3.51276  0.12571  3.40979      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     10   2.89562  3.51276  0.12571  3.40979     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     11   3.01512  2.54827  3.06606  0.19099     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     12   3.34837  0.14079  3.40133  2.76688     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     13   0.15198  3.30687  2.75398  3.20169     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     14   0.15198  3.30687  2.75398  3.20169     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     15   3.01512  2.54827  3.06606  0.19099     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     16   3.34837  0.14079  3.40133  2.76688     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     17   3.34837  0.14079  3.40133  2.76688     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     18   3.34837  0.14079  3.40133  2.76688     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     19   2.89562  3.51276  0.12571  3.40979     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     20   2.89562  3.51276  0.12571  3.40979     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     21   2.89562  3.51276  0.12571  3.40979     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     22   2.89562  3.51276  0.12571  3.40979     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     23   3.34837  0.14079  3.40133  2.76688     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     24   3.34837  0.14079  3.40133  2.76688     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     25   0.15198  3.30687  2.75398  3.20169     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     26   3.34837  0.14079  3.40133  2.76688     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     27   2.89562  3.51276  0.12571  3.40979     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     28   3.01512  2.54827  3.06606  0.19099     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     29   3.34837  0.14079  3.40133  2.76688     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     30   3.34837  0.14079  3.40133  2.76688     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     31   2.89562  3.51276  0.12571  3.40979     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     32   3.01512  2.54827  3.06606  0.19099     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     33   3.34837  0.14079  3.40133  2.76688     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     34   3.01512  2.54827  3.06606  0.19099     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     35   2.89562  3.51276  0.12571  3.40979     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     36   0.15198  3.30687  2.75398  3.20169     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     37   2.89562  3.51276  0.12571  3.40979     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     38   2.89562  3.51276  0.12571  3.40979     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     39   2.89562  3.51276  0.12571  3.40979     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     40   3.01512  2.54827  3.06606  0.19099     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     41   3.34837  0.14079  3.40133  2.76688     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     42   2.89562  3.51276  0.12571  3.40979     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     43   2.89562  3.51276  0.12571  3.40979     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     44   3.01512  2.54827  3.06606  0.19099     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03845  3.97063  3.97063  1.46634  0.26236  1.09861  0.40547
     45   3.01512  2.54827  3.06606  0.19099     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01941  3.95159        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:19 2012
NSEQ  14
EFFN  3.496582
CKSUM 454827207
STATS LOCAL MSV       -7.1258  0.71933
STATS LOCAL VITERBI   -7.6320  0.71933
STATS LOCAL FORWARD   -4.0437  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.07348  1.02582  1.07126  1.75347
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  0.00000        *
      1   3.49533  0.12303  3.54211  2.87408      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      2   2.98489  3.64235  0.11136  3.55276      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      3   2.98489  3.64235  0.11136  3.55276      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      4   3.49533  0.12303  3.54211  2.87408      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      5   2.78530  1.85386  2.84503  0.32362      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      6   3.49533  0.12303  3.54211  2.87408      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      7   2.56878  1.42220  2.63576  0.49344      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      8   2.98489  3.64235  0.11136  3.55276      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      9   2.98489  3.64235  0.11136  3.55276      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     10   3.49533  0.12303  3.54211  2.87408     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     11   3.14355  2.63004  3.18959  0.17007     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     12   3.49533  0.12303  3.54211  2.87408     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     13   0.13496  3.43436  2.83695  3.34119     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     14   3.49533  0.12303  3.54211  2.87408     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     15   3.14355  2.63004  3.18959  0.17007     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     16   2.98489  3.64235  0.11136  3.55276     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     17   3.49533  0.12303  3.54211  2.87408     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     18   3.49533  0.12303  3.54211  2.87408     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     19   0.46429  2.70804  1.47690  2.57173     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     20   2.98489  3.64235  0.11136  3.55276     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     21   0.27794  3.00111  1.98907  2.88058     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     22   2.98489  3.64235  0.11136  3.55276     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     23   3.49533  0.12303  3.54211  2.87408     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     24   3.49533  0.12303  3.54211  2.87408     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     25   0.87142  2.18300  2.17975  1.03319     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     26   3.49533  0.12303  3.54211  2.87408     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     27   2.98489  3.64235  0.11136  3.55276     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     28   3.49533  0.12303  3.54211  2.87408     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     29   3.49533  0.12303  3.54211  2.87408     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     30   3.14355  2.63004  3.18959  0.17007     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     31   2.98489  3.64235  0.11136  3.55276     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     32   3.14355  2.63004  3.18959  0.17007     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     33   3.49533  0.12303  3.54211  2.87408     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     34   3.49533  0.12303  3.54211  2.87408     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     35   2.98489  3.64235  0.11136  3.55276     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     36   0.13496  3.43436  2.83695  3.34119     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     37   2.98489  3.64235  0.11136  3.55276     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     38   2.98489  3.64235  0.11136  3.55276     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     39   2.98489  3.64235  0.11136  3.55276     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     40   3.14355  2.63004  3.18959  0.17007     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     41   3.49533  0.12303  3.54211  2.87408     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     42   2.98489  3.64235  0.11136  3.55276     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     43   2.98489  3.64235  0.11136  3.55276     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     44   3.49533  0.12303  3.54211  2.87408     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     45   2.98489  3.64235  0.11136  3.55276     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01803  4.02474        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoneo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:23 2012
NSEQ  24
EFFN  3.477539
CKSUM 2321990089
STATS LOCAL MSV       -7.2176  0.71931
STATS LOCAL VITERBI   -7.8215  0.71931
STATS LOCAL FORWARD   -3.6009  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.02877  1.12529  1.08171  1.58510
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  0.00000        *
      1   2.98094  3.63655  0.11196  3.54635      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      2   3.48870  0.12377  3.53577  2.86929      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      3   2.98094  3.63655  0.11196  3.54635      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      4   2.98094  3.63655  0.11196  3.54635      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      5   3.48870  0.12377  3.53577  2.86929      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      6   3.48870  0.12377  3.53577  2.86929      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      7   3.13765  2.62630  3.18392  0.17097      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      8   3.48870  0.12377  3.53577  2.86929      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      9   2.98094  3.63655  0.11196  3.54635      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     10   2.98094  3.63655  0.11196  3.54635     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     11   2.98094  3.63655  0.11196  3.54635     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     12   2.48121  1.20688  2.55094  0.61763     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     13   0.13568  3.42858  2.83322  3.33486     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     14   1.44121  1.61091  2.13965  0.80754     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     15   3.13765  2.62630  3.18392  0.17097     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     16   3.48870  0.12377  3.53577  2.86929     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     17   3.48870  0.12377  3.53577  2.86929     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     18   3.48870  0.12377  3.53577  2.86929     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     19   2.98094  3.63655  0.11196  3.54635     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     20   0.13568  3.42858  2.83322  3.33486     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     21   2.98094  3.63655  0.11196  3.54635     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     22   2.98094  3.63655  0.11196  3.54635     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     23   3.48870  0.12377  3.53577  2.86929     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     24   3.48870  0.12377  3.53577  2.86929     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     25   0.13568  3.42858  2.83322  3.33486     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     26   2.42167  0.25236  2.92944  2.51535     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     27   2.98094  3.63655  0.11196  3.54635     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     28   3.48870  0.12377  3.53577  2.86929     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     29   3.48870  0.12377  3.53577  2.86929     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     30   2.75701  1.80810  2.81769  0.33854     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     31   2.98094  3.63655  0.11196  3.54635     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     32   3.13765  2.62630  3.18392  0.17097     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     33   3.48870  0.12377  3.53577  2.86929     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     34   3.13765  2.62630  3.18392  0.17097     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     35   3.48870  0.12377  3.53577  2.86929     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     36   0.13568  3.42858  2.83322  3.33486     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     37   2.98094  3.63655  0.11196  3.54635     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     38   2.98094  3.63655  0.11196  3.54635     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     39   2.98094  3.63655  0.11196  3.54635     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     40   3.13765  2.62630  3.18392  0.17097     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     41   3.48870  0.12377  3.53577  2.86929     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     42   2.98094  3.63655  0.11196  3.54635     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     43   2.98094  3.63655  0.11196  3.54635     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     44   3.13765  2.62630  3.18392  0.17097     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     45   3.13765  2.62630  3.18392  0.17097     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01809  4.02133        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyonep_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:28 2012
NSEQ  2
EFFN  2.000000
CKSUM 488441447
STATS LOCAL MSV       -7.4471  0.72733
STATS LOCAL VITERBI   -8.3499  0.72733
STATS LOCAL FORWARD   -3.0393  0.72733
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.75073  1.10536  1.22053  1.60851
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoneq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:35 2012
NSEQ  13
EFFN  3.380127
CKSUM 962922846
STATS LOCAL MSV       -7.3474  0.71932
STATS LOCAL VITERBI   -7.7040  0.71932
STATS LOCAL FORWARD   -3.8646  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04819  1.08537  1.24545  1.40469
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  0.00000        *
      1   2.96019  3.60621  0.11516  3.51280      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      2   3.45409  0.12773  3.50265  2.84425      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      3   2.96019  3.60621  0.11516  3.51280      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      4   2.96019  3.60621  0.11516  3.51280      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      5   3.45409  0.12773  3.50265  2.84425      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      6   0.13951  3.39848  2.81374  3.30187      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      7   3.10704  2.60685  3.15448  0.17574      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      8   3.45409  0.12773  3.50265  2.84425      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
      9   2.96019  3.60621  0.11516  3.51280      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     10   2.96019  3.60621  0.11516  3.51280     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     11   3.45409  0.12773  3.50265  2.84425     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     12   3.10704  2.60685  3.15448  0.17574     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     13   3.10704  2.60685  3.15448  0.17574     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     14   3.45409  0.12773  3.50265  2.84425     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     15   3.45409  0.12773  3.50265  2.84425     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     16   0.13951  3.39848  2.81374  3.30187     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     17   3.45409  0.12773  3.50265  2.84425     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     18   3.45409  0.12773  3.50265  2.84425     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     19   2.96019  3.60621  0.11516  3.51280     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     20   1.84363  2.30298  2.50331  0.41554     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     21   3.10704  2.60685  3.15448  0.17574     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     22   2.96019  3.60621  0.11516  3.51280     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     23   3.45409  0.12773  3.50265  2.84425     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     24   3.45409  0.12773  3.50265  2.84425     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     25   0.13951  3.39848  2.81374  3.30187     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     26   3.45409  0.12773  3.50265  2.84425     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     27   2.96019  3.60621  0.11516  3.51280     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     28   3.45409  0.12773  3.50265  2.84425     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     29   3.45409  0.12773  3.50265  2.84425     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     30   3.10704  2.60685  3.15448  0.17574     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     31   2.96019  3.60621  0.11516  3.51280     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     32   3.10704  2.60685  3.15448  0.17574     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     33   3.45409  0.12773  3.50265  2.84425     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     34   3.10704  2.60685  3.15448  0.17574     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     35   3.45409  0.12773  3.50265  2.84425     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     36   0.13951  3.39848  2.81374  3.30187     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     37   2.96019  3.60621  0.11516  3.51280     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     38   2.96019  3.60621  0.11516  3.51280     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     39   2.96019  3.60621  0.11516  3.51280     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     40   3.10704  2.60685  3.15448  0.17574     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     41   3.45409  0.12773  3.50265  2.84425     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     42   2.96019  3.60621  0.11516  3.51280     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     43   2.20232  2.18081  1.41085  0.63005     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     44   3.10704  2.60685  3.15448  0.17574     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03650  4.02180  4.02180  1.46634  0.26236  1.09861  0.40547
     45   3.10704  2.60685  3.15448  0.17574     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01842  4.00371        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortyoner_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:41 2012
NSEQ  6
EFFN  3.284180
CKSUM 1160924706
STATS LOCAL MSV       -8.1910  0.71932
STATS LOCAL VITERBI   -7.7546  0.71932
STATS LOCAL FORWARD   -4.1572  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92186  1.19878  1.11086  1.50135
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  0.00000        *
      1   2.93885  3.57515  0.11855  3.47852      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      2   2.93885  3.57515  0.11855  3.47852      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      3   3.41881  0.13193  3.46887  2.81857      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      4   3.41881  0.13193  3.46887  2.81857      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      5   3.07610  2.58718  3.12474  0.18071      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      6   3.41881  0.13193  3.46887  2.81857      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      7   3.07610  2.58718  3.12474  0.18071      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      8   2.93885  3.57515  0.11855  3.47852      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
      9   2.93885  3.57515  0.11855  3.47852      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     10   2.93885  3.57515  0.11855  3.47852     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     11   3.07610  2.58718  3.12474  0.18071     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     12   3.41881  0.13193  3.46887  2.81857     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     13   0.14354  3.36786  2.79386  3.26835     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     14   3.41881  0.13193  3.46887  2.81857     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     15   3.07610  2.58718  3.12474  0.18071     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     16   3.41881  0.13193  3.46887  2.81857     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     17   3.41881  0.13193  3.46887  2.81857     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     18   0.14354  3.36786  2.79386  3.26835     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     19   2.93885  3.57515  0.11855  3.47852     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     20   0.14354  3.36786  2.79386  3.26835     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     21   2.93885  3.57515  0.11855  3.47852     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     22   2.93885  3.57515  0.11855  3.47852     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     23   3.41881  0.13193  3.46887  2.81857     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     24   3.41881  0.13193  3.46887  2.81857     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     25   0.14354  3.36786  2.79386  3.26835     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     26   3.41881  0.13193  3.46887  2.81857     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     27   2.93885  3.57515  0.11855  3.47852     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     28   3.07610  2.58718  3.12474  0.18071     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     29   3.41881  0.13193  3.46887  2.81857     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     30   3.07610  2.58718  3.12474  0.18071     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     31   2.93885  3.57515  0.11855  3.47852     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     32   3.07610  2.58718  3.12474  0.18071     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     33   3.41881  0.13193  3.46887  2.81857     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     34   3.07610  2.58718  3.12474  0.18071     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     35   2.93885  3.57515  0.11855  3.47852     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     36   0.14354  3.36786  2.79386  3.26835     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     37   2.93885  3.57515  0.11855  3.47852     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     38   1.99573  3.03008  0.27322  2.90320     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     39   2.42471  2.07135  0.34812  2.53243     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     40   3.07610  2.58718  3.12474  0.18071     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     41   3.41881  0.13193  3.46887  2.81857     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     42   2.93885  3.57515  0.11855  3.47852     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     43   2.93885  3.57515  0.11855  3.47852     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     44   3.41881  0.13193  3.46887  2.81857     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00445  4.00445  1.46634  0.26236  1.09861  0.40547
     45   3.07610  2.58718  3.12474  0.18071     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01875  3.98605        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortysevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:05 2012
NSEQ  15
EFFN  3.409424
CKSUM 1562515902
STATS LOCAL MSV       -7.2512  0.71932
STATS LOCAL VITERBI   -7.7652  0.71932
STATS LOCAL FORWARD   -4.0508  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.80417  1.23325  1.19344  1.42350
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  0.00000        *
      1   3.46462  0.12651  3.51274  2.85188      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      2   2.96653  3.61546  0.11417  3.52302      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      3   3.46462  0.12651  3.51274  2.85188      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      4   3.11633  2.61276  3.16342  0.17427      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      5   3.46462  0.12651  3.51274  2.85188      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      6   0.13833  3.40764  2.81967  3.31191      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      7   3.46462  0.12651  3.51274  2.85188      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      8   3.11633  2.61276  3.16342  0.17427      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
      9   2.96653  3.61546  0.11417  3.52302      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     10   2.96653  3.61546  0.11417  3.52302     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     11   0.13833  3.40764  2.81967  3.31191     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     12   2.96653  3.61546  0.11417  3.52302     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     13   2.42658  1.02241  2.49809  0.75568     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     14   1.47909  2.20605  2.32061  0.57304     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     15   3.46462  0.12651  3.51274  2.85188     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     16   3.46462  0.12651  3.51274  2.85188     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     17   3.46462  0.12651  3.51274  2.85188     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     18   0.13833  3.40764  2.81967  3.31191     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     19   2.96653  3.61546  0.11417  3.52302     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     20   3.11633  2.61276  3.16342  0.17427     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     21   2.96653  3.61546  0.11417  3.52302     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     22   0.13833  3.40764  2.81967  3.31191     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     23   2.96653  3.61546  0.11417  3.52302     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     24   3.46462  0.12651  3.51274  2.85188     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     25   0.13833  3.40764  2.81967  3.31191     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     26   3.11633  2.61276  3.16342  0.17427     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     27   2.96653  3.61546  0.11417  3.52302     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     28   3.46462  0.12651  3.51274  2.85188     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     29   3.46462  0.12651  3.51274  2.85188     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     30   3.11633  2.61276  3.16342  0.17427     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     31   2.96653  3.61546  0.11417  3.52302     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     32   3.11633  2.61276  3.16342  0.17427     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     33   3.46462  0.12651  3.51274  2.85188     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     34   3.11633  2.61276  3.16342  0.17427     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     35   2.96653  3.61546  0.11417  3.52302     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     36   0.13833  3.40764  2.81967  3.31191     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     37   2.96653  3.61546  0.11417  3.52302     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     38   3.46462  0.12651  3.51274  2.85188     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     39   2.96653  3.61546  0.11417  3.52302     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     40   3.11633  2.61276  3.16342  0.17427     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     41   3.46462  0.12651  3.51274  2.85188     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     42   2.96653  3.61546  0.11417  3.52302     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     43   3.11633  2.61276  3.16342  0.17427     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     44   2.96653  3.61546  0.11417  3.52302     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02703  4.02703  1.46634  0.26236  1.09861  0.40547
     45   3.11633  2.61276  3.16342  0.17427     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00905        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortysevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:50:12 2012
NSEQ  3
EFFN  3.000000
CKSUM 3961930010
STATS LOCAL MSV       -8.0281  0.72000
STATS LOCAL VITERBI   -7.7576  0.72000
STATS LOCAL FORWARD   -3.9753  0.72000
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92209  1.20667  1.15009  1.43590
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:57 2012
NSEQ  3
EFFN  3.000000
CKSUM 1910693752
STATS LOCAL MSV       -8.1780  0.72010
STATS LOCAL VITERBI   -7.9339  0.72010
STATS LOCAL FORWARD   -3.7083  0.72010
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04431  1.14945  1.20707  1.36788
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   3.30705  0.14631  3.36166  2.73626     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:03 2012
NSEQ  91
EFFN  3.340851
CKSUM 1476701771
STATS LOCAL MSV       -8.0383  0.71932
STATS LOCAL VITERBI   -7.8104  0.71932
STATS LOCAL FORWARD   -3.8961  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93857  1.37910  1.13933  1.25790
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  0.00000        *
      1   2.95157  3.59364  0.11652  3.49892      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      2   3.43979  0.12941  3.48897  2.83386      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      3   2.95157  3.59364  0.11652  3.49892      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      4   3.43979  0.12941  3.48897  2.83386      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      5   3.09447  2.59887  3.14240  0.17774      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      6   3.43979  0.12941  3.48897  2.83386      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      7   3.09447  2.59887  3.14240  0.17774      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      8   3.09447  2.59887  3.14240  0.17774      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
      9   2.95157  3.59364  0.11652  3.49892      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     10   2.95157  3.59364  0.11652  3.49892     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     11   2.95157  3.59364  0.11652  3.49892     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     12   3.09447  2.59887  3.14240  0.17774     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     13   3.09447  2.59887  3.14240  0.17774     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     14   3.43979  0.12941  3.48897  2.83386     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     15   3.09447  2.59887  3.14240  0.17774     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     16   3.43979  0.12941  3.48897  2.83386     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     17   3.43979  0.12941  3.48897  2.83386     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     18   3.43979  0.12941  3.48897  2.83386     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     19   0.14113  3.38606  2.80569  3.28828     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     20   2.95157  3.59364  0.11652  3.49892     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     21   2.95157  3.59364  0.11652  3.49892     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     22   0.14113  3.38606  2.80569  3.28828     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     23   2.95157  3.59364  0.11652  3.49892     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     24   3.43979  0.12941  3.48897  2.83386     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     25   0.14113  3.38606  2.80569  3.28828     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     26   3.09447  2.59887  3.14240  0.17774     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     27   2.95157  3.59364  0.11652  3.49892     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     28   3.09447  2.59887  3.14240  0.17774     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     29   3.43979  0.12941  3.48897  2.83386     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     30   3.09447  2.59887  3.14240  0.17774     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     31   2.95157  3.59364  0.11652  3.49892     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     32   3.09447  2.59887  3.14240  0.17774     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     33   3.43979  0.12941  3.48897  2.83386     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     34   3.09447  2.59887  3.14240  0.17774     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     35   2.95157  3.59364  0.11652  3.49892     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     36   0.14113  3.38606  2.80569  3.28828     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     37   2.95157  3.59364  0.11652  3.49892     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     38   3.09447  2.59887  3.14240  0.17774     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     39   2.95157  3.59364  0.11652  3.49892     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     40   3.09447  2.59887  3.14240  0.17774     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     41   3.43979  0.12941  3.48897  2.83386     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     42   2.95157  3.59364  0.11652  3.49892     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     43   2.95157  3.59364  0.11652  3.49892     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     44   0.25356  2.90313  2.57702  2.37388     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03676  4.01473  4.01473  1.46634  0.26236  1.09861  0.40547
     45   2.05766  2.35964  2.61577  0.35001     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01855  3.99652        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:12 2012
NSEQ  10
EFFN  3.344727
CKSUM 3904922218
STATS LOCAL MSV       -8.0935  0.71933
STATS LOCAL VITERBI   -7.7454  0.71933
STATS LOCAL FORWARD   -3.8675  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05450  1.18855  1.08806  1.46832
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  0.00000        *
      1   2.95243  3.59489  0.11638  3.50030      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      2   3.44121  0.12925  3.49033  2.83489      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      3   2.95243  3.59489  0.11638  3.50030      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      4   3.44121  0.12925  3.49033  2.83489      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      5   3.09571  2.59966  3.14360  0.17754      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      6   3.44121  0.12925  3.49033  2.83489      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      7   3.09571  2.59966  3.14360  0.17754      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      8   3.44121  0.12925  3.49033  2.83489      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
      9   2.95243  3.59489  0.11638  3.50030      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     10   2.95243  3.59489  0.11638  3.50030     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     11   2.95243  3.59489  0.11638  3.50030     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     12   3.09571  2.59966  3.14360  0.17754     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     13   3.09571  2.59966  3.14360  0.17754     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     14   3.44121  0.12925  3.49033  2.83489     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     15   3.09571  2.59966  3.14360  0.17754     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     16   3.44121  0.12925  3.49033  2.83489     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     17   3.44121  0.12925  3.49033  2.83489     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     18   3.44121  0.12925  3.49033  2.83489     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     19   2.95243  3.59489  0.11638  3.50030     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     20   2.95243  3.59489  0.11638  3.50030     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     21   2.95243  3.59489  0.11638  3.50030     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     22   0.14097  3.38730  2.80649  3.28963     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     23   2.95243  3.59489  0.11638  3.50030     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     24   3.44121  0.12925  3.49033  2.83489     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     25   0.14097  3.38730  2.80649  3.28963     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     26   2.54110  0.54447  2.61246  1.31782     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     27   2.95243  3.59489  0.11638  3.50030     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     28   3.09571  2.59966  3.14360  0.17754     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     29   3.44121  0.12925  3.49033  2.83489     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     30   2.54110  0.54447  2.61246  1.31782     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     31   2.95243  3.59489  0.11638  3.50030     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     32   3.09571  2.59966  3.14360  0.17754     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     33   3.44121  0.12925  3.49033  2.83489     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     34   3.09571  2.59966  3.14360  0.17754     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     35   2.95243  3.59489  0.11638  3.50030     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     36   0.14097  3.38730  2.80649  3.28963     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     37   2.95243  3.59489  0.11638  3.50030     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     38   3.09571  2.59966  3.14360  0.17754     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     39   2.95243  3.59489  0.11638  3.50030     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     40   3.09571  2.59966  3.14360  0.17754     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     41   3.44121  0.12925  3.49033  2.83489     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     42   2.95243  3.59489  0.11638  3.50030     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     43   2.95243  3.59489  0.11638  3.50030     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     44   3.44121  0.12925  3.49033  2.83489     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03674  4.01543  4.01543  1.46634  0.26236  1.09861  0.40547
     45   0.14097  3.38730  2.80649  3.28963     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01854  3.99723        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:18 2012
NSEQ  41
EFFN  3.410828
CKSUM 1774296887
STATS LOCAL MSV       -7.2090  0.71932
STATS LOCAL VITERBI   -7.7796  0.71932
STATS LOCAL FORWARD   -3.8751  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.06490  1.38686  1.13813  1.19438
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  0.00000        *
      1   2.96683  3.61590  0.11413  3.52351      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      2   3.46513  0.12645  3.51322  2.85225      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      3   2.96683  3.61590  0.11413  3.52351      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      4   3.46513  0.12645  3.51322  2.85225      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      5   3.11677  2.61304  3.16384  0.17420      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      6   3.46513  0.12645  3.51322  2.85225      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      7   3.11677  2.61304  3.16384  0.17420      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      8   3.11677  2.61304  3.16384  0.17420      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
      9   2.96683  3.61590  0.11413  3.52351      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     10   2.96683  3.61590  0.11413  3.52351     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     11   2.96683  3.61590  0.11413  3.52351     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     12   3.11677  2.61304  3.16384  0.17420     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     13   3.11677  2.61304  3.16384  0.17420     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     14   2.77098  0.36080  2.83838  1.70505     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     15   3.11677  2.61304  3.16384  0.17420     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     16   3.46513  0.12645  3.51322  2.85225     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     17   3.46513  0.12645  3.51322  2.85225     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     18   3.46513  0.12645  3.51322  2.85225     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     19   0.13828  3.40807  2.81996  3.31238     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     20   2.96683  3.61590  0.11413  3.52351     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     21   2.96683  3.61590  0.11413  3.52351     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     22   0.13828  3.40807  2.81996  3.31238     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     23   2.96683  3.61590  0.11413  3.52351     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     24   3.46513  0.12645  3.51322  2.85225     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     25   0.18283  3.24670  2.46518  3.14204     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     26   2.86839  2.05741  2.92483  0.27214     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     27   2.96683  3.61590  0.11413  3.52351     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     28   3.11677  2.61304  3.16384  0.17420     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     29   3.46513  0.12645  3.51322  2.85225     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     30   3.11677  2.61304  3.16384  0.17420     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     31   2.96683  3.61590  0.11413  3.52351     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     32   3.11677  2.61304  3.16384  0.17420     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     33   3.46513  0.12645  3.51322  2.85225     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     34   3.11677  2.61304  3.16384  0.17420     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     35   2.96683  3.61590  0.11413  3.52351     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     36   0.13828  3.40807  2.81996  3.31238     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     37   2.96683  3.61590  0.11413  3.52351     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     38   3.11677  2.61304  3.16384  0.17420     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     39   2.96683  3.61590  0.11413  3.52351     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     40   3.11677  2.61304  3.16384  0.17420     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     41   3.46513  0.12645  3.51322  2.85225     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     42   2.96683  3.61590  0.11413  3.52351     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     43   2.96683  3.61590  0.11413  3.52351     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     44   3.11677  2.61304  3.16384  0.17420     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02728  4.02728  1.46634  0.26236  1.09861  0.40547
     45   2.97628  2.28208  3.02857  0.22494     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01831  4.00930        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreed_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:26 2012
NSEQ  4
EFFN  3.417969
CKSUM 173122380
STATS LOCAL MSV       -7.2851  0.71933
STATS LOCAL VITERBI   -7.8107  0.71933
STATS LOCAL FORWARD   -4.0662  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.06256  1.34658  1.25579  1.11508
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  0.00000        *
      1   2.96836  3.61813  0.11389  3.52598      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      2   3.46768  0.12616  3.51566  2.85409      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      3   2.96836  3.61813  0.11389  3.52598      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      4   3.46768  0.12616  3.51566  2.85409      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      5   3.11902  2.61447  3.16601  0.17385      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      6   3.46768  0.12616  3.51566  2.85409      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      7   3.11902  2.61447  3.16601  0.17385      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      8   3.11902  2.61447  3.16601  0.17385      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
      9   2.96836  3.61813  0.11389  3.52598      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     10   2.96836  3.61813  0.11389  3.52598     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     11   2.96836  3.61813  0.11389  3.52598     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     12   3.11902  2.61447  3.16601  0.17385     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     13   3.11902  2.61447  3.16601  0.17385     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     14   3.46768  0.12616  3.51566  2.85409     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     15   2.42235  0.95448  2.49423  0.81257     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     16   3.46768  0.12616  3.51566  2.85409     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     17   3.46768  0.12616  3.51566  2.85409     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     18   3.46768  0.12616  3.51566  2.85409     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     19   0.13799  3.41029  2.82139  3.31481     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     20   2.96836  3.61813  0.11389  3.52598     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     21   2.96836  3.61813  0.11389  3.52598     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     22   0.13799  3.41029  2.82139  3.31481     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     23   2.96836  3.61813  0.11389  3.52598     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     24   3.46768  0.12616  3.51566  2.85409     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     25   0.13799  3.41029  2.82139  3.31481     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     26   3.11902  2.61447  3.16601  0.17385     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     27   2.96836  3.61813  0.11389  3.52598     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     28   3.11902  2.61447  3.16601  0.17385     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     29   3.46768  0.12616  3.51566  2.85409     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     30   3.11902  2.61447  3.16601  0.17385     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     31   2.96836  3.61813  0.11389  3.52598     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     32   3.11902  2.61447  3.16601  0.17385     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     33   3.46768  0.12616  3.51566  2.85409     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     34   3.11902  2.61447  3.16601  0.17385     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     35   2.96836  3.61813  0.11389  3.52598     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     36   0.13799  3.41029  2.82139  3.31481     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     37   2.96836  3.61813  0.11389  3.52598     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     38   3.11902  2.61447  3.16601  0.17385     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     39   2.96836  3.61813  0.11389  3.52598     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     40   3.11902  2.61447  3.16601  0.17385     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     41   3.46768  0.12616  3.51566  2.85409     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     42   3.11902  2.61447  3.16601  0.17385     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     43   3.11902  2.61447  3.16601  0.17385     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     44   3.11902  2.61447  3.16601  0.17385     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03625  4.02856  4.02856  1.46634  0.26236  1.09861  0.40547
     45   3.11902  2.61447  3.16601  0.17385     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01829  4.01059        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:31 2012
NSEQ  3
EFFN  3.000000
CKSUM 1591869727
STATS LOCAL MSV       -8.1938  0.72015
STATS LOCAL VITERBI   -7.9749  0.72015
STATS LOCAL FORWARD   -3.8874  0.72015
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.91534  1.38722  1.09397  1.31656
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:36 2012
NSEQ  3
EFFN  3.000000
CKSUM 739477632
STATS LOCAL MSV       -8.2192  0.72023
STATS LOCAL VITERBI   -7.9047  0.72023
STATS LOCAL FORWARD   -3.7271  0.72023
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.10282  1.10194  1.09601  1.55372
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.70020  2.19823  2.14894  1.28770     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreeg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:42 2012
NSEQ  2
EFFN  2.000000
CKSUM 1519089656
STATS LOCAL MSV       -7.5630  0.72790
STATS LOCAL VITERBI   -8.4077  0.72790
STATS LOCAL FORWARD   -3.2043  0.72790
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82883  1.28308  1.21809  1.32268
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreeh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:47 2012
NSEQ  8
EFFN  3.269531
CKSUM 3808685909
STATS LOCAL MSV       -8.1027  0.71933
STATS LOCAL VITERBI   -7.8398  0.71933
STATS LOCAL FORWARD   -3.7438  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93688  1.31183  1.25872  1.19567
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
      1   2.93551  3.57031  0.11909  3.47317      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      2   3.41331  0.13259  3.46361  2.81457      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      3   2.93551  3.57031  0.11909  3.47317      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      4   3.41331  0.13259  3.46361  2.81457      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      5   3.07131  2.58413  3.12013  0.18149      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      6   3.41331  0.13259  3.46361  2.81457      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      7   3.41331  0.13259  3.46361  2.81457      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      8   3.07131  2.58413  3.12013  0.18149      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      9   2.93551  3.57031  0.11909  3.47317      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     10   2.93551  3.57031  0.11909  3.47317     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     11   2.93551  3.57031  0.11909  3.47317     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     12   3.07131  2.58413  3.12013  0.18149     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     13   0.14418  3.36310  2.79076  3.26314     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     14   3.07131  2.58413  3.12013  0.18149     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     15   3.07131  2.58413  3.12013  0.18149     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     16   3.41331  0.13259  3.46361  2.81457     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     17   3.41331  0.13259  3.46361  2.81457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     18   3.41331  0.13259  3.46361  2.81457     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     19   0.14418  3.36310  2.79076  3.26314     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     20   2.93551  3.57031  0.11909  3.47317     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     21   2.93551  3.57031  0.11909  3.47317     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     22   0.14418  3.36310  2.79076  3.26314     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     23   2.93551  3.57031  0.11909  3.47317     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     24   3.41331  0.13259  3.46361  2.81457     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     25   0.14418  3.36310  2.79076  3.26314     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     26   3.07131  2.58413  3.12013  0.18149     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     27   2.93551  3.57031  0.11909  3.47317     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     28   3.07131  2.58413  3.12013  0.18149     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     29   3.41331  0.13259  3.46361  2.81457     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     30   3.07131  2.58413  3.12013  0.18149     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     31   2.93551  3.57031  0.11909  3.47317     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     32   3.07131  2.58413  3.12013  0.18149     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     33   3.41331  0.13259  3.46361  2.81457     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     34   3.07131  2.58413  3.12013  0.18149     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     35   3.41331  0.13259  3.46361  2.81457     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     36   0.14418  3.36310  2.79076  3.26314     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     37   2.93551  3.57031  0.11909  3.47317     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     38   3.07131  2.58413  3.12013  0.18149     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     39   2.93551  3.57031  0.11909  3.47317     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     40   3.07131  2.58413  3.12013  0.18149     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     41   3.41331  0.13259  3.46361  2.81457     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     42   2.93551  3.57031  0.11909  3.47317     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     43   3.07131  2.58413  3.12013  0.18149     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     44   3.07131  2.58413  3.12013  0.18149     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     45   3.07131  2.58413  3.12013  0.18149     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:54 2012
NSEQ  5
EFFN  3.481445
CKSUM 3758960601
STATS LOCAL MSV       -7.3778  0.71931
STATS LOCAL VITERBI   -7.9054  0.71931
STATS LOCAL FORWARD   -4.2141  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93383  1.31332  1.19239  1.26236
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  0.00000        *
      1   2.98175  3.63775  0.11183  3.54766      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      2   3.49007  0.12362  3.53707  2.87028      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      3   2.98175  3.63775  0.11183  3.54766      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      4   3.49007  0.12362  3.53707  2.87028      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      5   3.13887  2.62707  3.18509  0.17078      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      6   3.49007  0.12362  3.53707  2.87028      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      7   2.46252  0.72637  2.53467  1.04461      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      8   3.49007  0.12362  3.53707  2.87028      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
      9   3.13887  2.62707  3.18509  0.17078      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     10   2.98175  3.63775  0.11183  3.54766     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     11   2.98175  3.63775  0.11183  3.54766     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     12   3.13887  2.62707  3.18509  0.17078     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     13   3.13887  2.62707  3.18509  0.17078     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     14   3.49007  0.12362  3.53707  2.87028     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     15   3.13887  2.62707  3.18509  0.17078     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     16   3.49007  0.12362  3.53707  2.87028     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     17   3.49007  0.12362  3.53707  2.87028     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     18   0.13553  3.42977  2.83398  3.33617     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     19   2.98175  3.63775  0.11183  3.54766     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     20   2.98175  3.63775  0.11183  3.54766     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     21   2.98175  3.63775  0.11183  3.54766     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     22   0.13553  3.42977  2.83398  3.33617     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     23   2.98175  3.63775  0.11183  3.54766     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     24   3.49007  0.12362  3.53707  2.87028     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     25   0.13553  3.42977  2.83398  3.33617     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     26   3.13887  2.62707  3.18509  0.17078     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     27   2.98175  3.63775  0.11183  3.54766     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     28   3.13887  2.62707  3.18509  0.17078     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     29   2.46252  0.72637  2.53467  1.04461     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     30   3.13887  2.62707  3.18509  0.17078     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     31   2.98175  3.63775  0.11183  3.54766     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     32   3.13887  2.62707  3.18509  0.17078     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     33   3.49007  0.12362  3.53707  2.87028     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     34   3.13887  2.62707  3.18509  0.17078     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     35   2.98175  3.63775  0.11183  3.54766     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     36   0.13553  3.42977  2.83398  3.33617     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     37   2.98175  3.63775  0.11183  3.54766     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     38   3.49007  0.12362  3.53707  2.87028     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     39   2.98175  3.63775  0.11183  3.54766     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     40   3.13887  2.62707  3.18509  0.17078     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     41   3.49007  0.12362  3.53707  2.87028     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     42   0.13553  3.42977  2.83398  3.33617     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     43   3.13887  2.62707  3.18509  0.17078     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     44   2.98175  3.63775  0.11183  3.54766     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03584  4.03979  4.03979  1.46634  0.26236  1.09861  0.40547
     45   3.13887  2.62707  3.18509  0.17078     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01808  4.02203        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:48:59 2012
NSEQ  4
EFFN  3.175781
CKSUM 3177132795
STATS LOCAL MSV       -8.0711  0.71931
STATS LOCAL VITERBI   -7.8271  0.71931
STATS LOCAL FORWARD   -4.1706  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82240  1.26363  1.14453  1.43816
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   2.91360  3.53861  0.12268  3.43825      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      2   3.37748  0.13704  3.42926  2.78832      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      3   2.91360  3.53861  0.12268  3.43825      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   3.04021  2.56430  3.09020  0.18668      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   3.37748  0.13704  3.42926  2.78832      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   3.04021  2.56430  3.09020  0.18668      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   3.37748  0.13704  3.42926  2.78832      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   3.04021  2.56430  3.09020  0.18668      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   2.91360  3.53861  0.12268  3.43825     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   2.91360  3.53861  0.12268  3.43825     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   0.14843  3.33206  2.77050  3.22920     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   3.04021  2.56430  3.09020  0.18668     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   3.37748  0.13704  3.42926  2.78832     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   3.37748  0.13704  3.42926  2.78832     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   3.37748  0.13704  3.42926  2.78832     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   3.37748  0.13704  3.42926  2.78832     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   0.14843  3.33206  2.77050  3.22920     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   2.91360  3.53861  0.12268  3.43825     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   2.91360  3.53861  0.12268  3.43825     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   2.91360  3.53861  0.12268  3.43825     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   0.14843  3.33206  2.77050  3.22920     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   2.91360  3.53861  0.12268  3.43825     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   3.37748  0.13704  3.42926  2.78832     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   0.14843  3.33206  2.77050  3.22920     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   3.04021  2.56430  3.09020  0.18668     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   2.91360  3.53861  0.12268  3.43825     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.04021  2.56430  3.09020  0.18668     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   3.37748  0.13704  3.42926  2.78832     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.04021  2.56430  3.09020  0.18668     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   2.91360  3.53861  0.12268  3.43825     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   3.04021  2.56430  3.09020  0.18668     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   3.37748  0.13704  3.42926  2.78832     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   3.04021  2.56430  3.09020  0.18668     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   2.91360  3.53861  0.12268  3.43825     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   0.14843  3.33206  2.77050  3.22920     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   2.91360  3.53861  0.12268  3.43825     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   3.04021  2.56430  3.09020  0.18668     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   2.91360  3.53861  0.12268  3.43825     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   3.04021  2.56430  3.09020  0.18668     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   3.37748  0.13704  3.42926  2.78832     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   2.91360  3.53861  0.12268  3.43825     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   3.37748  0.13704  3.42926  2.78832     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   2.91360  3.53861  0.12268  3.43825     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   0.14843  3.33206  2.77050  3.22920     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:03 2012
NSEQ  2
EFFN  2.000000
CKSUM 1955569616
STATS LOCAL MSV       -7.4824  0.72803
STATS LOCAL VITERBI   -8.2186  0.72803
STATS LOCAL FORWARD   -3.5060  0.72803
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74000  1.39139  1.21494  1.27646
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:11 2012
NSEQ  4
EFFN  3.222656
CKSUM 386890201
STATS LOCAL MSV       -8.1714  0.71933
STATS LOCAL VITERBI   -7.7255  0.71933
STATS LOCAL FORWARD   -4.3341  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82367  1.31887  1.19880  1.31091
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
      1   2.92468  3.55461  0.12085  3.45586      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      2   3.39555  0.13478  3.44658  2.80157      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      3   2.92468  3.55461  0.12085  3.45586      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      4   3.39555  0.13478  3.44658  2.80157      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      5   3.05586  2.57429  3.10526  0.18405      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      6   3.39555  0.13478  3.44658  2.80157      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      7   3.39555  0.13478  3.44658  2.80157      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      8   3.05586  2.57429  3.10526  0.18405      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      9   3.05586  2.57429  3.10526  0.18405      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     10   2.92468  3.55461  0.12085  3.45586     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     11   2.92468  3.55461  0.12085  3.45586     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     12   3.39555  0.13478  3.44658  2.80157     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     13   3.05586  2.57429  3.10526  0.18405     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     14   3.39555  0.13478  3.44658  2.80157     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     15   3.05586  2.57429  3.10526  0.18405     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     16   3.39555  0.13478  3.44658  2.80157     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     17   3.39555  0.13478  3.44658  2.80157     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     18   0.14627  3.34770  2.78072  3.24630     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     19   0.14627  3.34770  2.78072  3.24630     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     20   2.92468  3.55461  0.12085  3.45586     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     21   2.92468  3.55461  0.12085  3.45586     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     22   0.14627  3.34770  2.78072  3.24630     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     23   2.92468  3.55461  0.12085  3.45586     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     24   3.39555  0.13478  3.44658  2.80157     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     25   0.14627  3.34770  2.78072  3.24630     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     26   3.05586  2.57429  3.10526  0.18405     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     27   2.92468  3.55461  0.12085  3.45586     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     28   3.05586  2.57429  3.10526  0.18405     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     29   3.39555  0.13478  3.44658  2.80157     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     30   3.05586  2.57429  3.10526  0.18405     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     31   2.92468  3.55461  0.12085  3.45586     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     32   3.05586  2.57429  3.10526  0.18405     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     33   3.39555  0.13478  3.44658  2.80157     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     34   3.05586  2.57429  3.10526  0.18405     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     35   2.92468  3.55461  0.12085  3.45586     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     36   0.14627  3.34770  2.78072  3.24630     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     37   2.92468  3.55461  0.12085  3.45586     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     38   2.92468  3.55461  0.12085  3.45586     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     39   2.92468  3.55461  0.12085  3.45586     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     40   3.05586  2.57429  3.10526  0.18405     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     41   3.39555  0.13478  3.44658  2.80157     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     42   2.92468  3.55461  0.12085  3.45586     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     43   0.14627  3.34770  2.78072  3.24630     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     44   3.05586  2.57429  3.10526  0.18405     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     45   3.05586  2.57429  3.10526  0.18405     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortythreem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:49:16 2012
NSEQ  3
EFFN  3.000000
CKSUM 603423961
STATS LOCAL MSV       -7.9589  0.72027
STATS LOCAL VITERBI   -7.8724  0.72027
STATS LOCAL FORWARD   -3.7891  0.72027
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.91615  1.38333  1.14591  1.25825
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fortytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:47:52 2012
NSEQ  2
EFFN  2.000000
CKSUM 1347837329
STATS LOCAL MSV       -7.4541  0.72721
STATS LOCAL VITERBI   -8.2939  0.72721
STATS LOCAL FORWARD   -3.3636  0.72721
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92452  1.19705  1.08122  1.54745
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_foura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:20 2012
NSEQ  4
EFFN  3.214844
CKSUM 836289414
STATS LOCAL MSV       -7.9825  0.71932
STATS LOCAL VITERBI   -7.8216  0.71932
STATS LOCAL FORWARD   -4.1059  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63264  1.38880  1.19625  1.37482
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
      1   2.92285  3.55196  0.12115  3.45295      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      2   3.39256  0.13515  3.44371  2.79938      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      3   3.39256  0.13515  3.44371  2.79938      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      4   0.14663  3.34511  2.77903  3.24347      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      5   3.05326  2.57263  3.10276  0.18448      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      6   3.05326  2.57263  3.10276  0.18448      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      7   2.92285  3.55196  0.12115  3.45295      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      8   2.92285  3.55196  0.12115  3.45295      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      9   0.14663  3.34511  2.77903  3.24347      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     10   2.92285  3.55196  0.12115  3.45295     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     11   3.05326  2.57263  3.10276  0.18448     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     12   2.92285  3.55196  0.12115  3.45295     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     13   0.14663  3.34511  2.77903  3.24347     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     14   3.39256  0.13515  3.44371  2.79938     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     15   0.14663  3.34511  2.77903  3.24347     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     16   3.05326  2.57263  3.10276  0.18448     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     17   3.39256  0.13515  3.44371  2.79938     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     18   3.39256  0.13515  3.44371  2.79938     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     19   3.05326  2.57263  3.10276  0.18448     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     20   3.05326  2.57263  3.10276  0.18448     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     21   3.05326  2.57263  3.10276  0.18448     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     22   2.92285  3.55196  0.12115  3.45295     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     23   2.92285  3.55196  0.12115  3.45295     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     24   3.39256  0.13515  3.44371  2.79938     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     25   0.14663  3.34511  2.77903  3.24347     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     26   3.39256  0.13515  3.44371  2.79938     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     27   2.92285  3.55196  0.12115  3.45295     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     28   3.39256  0.13515  3.44371  2.79938     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     29   3.39256  0.13515  3.44371  2.79938     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     30   3.05326  2.57263  3.10276  0.18448     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     31   2.92285  3.55196  0.12115  3.45295     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     32   2.92285  3.55196  0.12115  3.45295     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     33   3.05326  2.57263  3.10276  0.18448     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     34   3.05326  2.57263  3.10276  0.18448     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     35   3.39256  0.13515  3.44371  2.79938     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     36   0.14663  3.34511  2.77903  3.24347     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     37   2.92285  3.55196  0.12115  3.45295     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     38   2.92285  3.55196  0.12115  3.45295     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     39   2.92285  3.55196  0.12115  3.45295     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     40   3.05326  2.57263  3.10276  0.18448     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     41   3.39256  0.13515  3.44371  2.79938     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     42   2.92285  3.55196  0.12115  3.45295     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     43   3.05326  2.57263  3.10276  0.18448     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     44   0.14663  3.34511  2.77903  3.24347     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     45   0.14663  3.34511  2.77903  3.24347     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:26 2012
NSEQ  7
EFFN  3.599121
CKSUM 4220224434
STATS LOCAL MSV       -7.4100  0.71932
STATS LOCAL VITERBI   -7.8550  0.71932
STATS LOCAL FORWARD   -4.0872  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.57621  1.40156  1.22724  1.37070
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  0.00000        *
      1   3.00563  3.67283  0.10826  3.58650      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      2   3.53025  0.11920  3.57549  2.89920      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      3   3.53025  0.11920  3.57549  2.89920      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      4   0.13122  3.46482  2.85658  3.37461      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      5   3.17479  2.64985  3.21962  0.16539      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      6   3.17479  2.64985  3.21962  0.16539      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      7   3.00563  3.67283  0.10826  3.58650      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      8   3.00563  3.67283  0.10826  3.58650      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
      9   0.13122  3.46482  2.85658  3.37461      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     10   3.00563  3.67283  0.10826  3.58650     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     11   3.17479  2.64985  3.21962  0.16539     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     12   2.15344  2.17550  1.15822  0.78456     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     13   0.13122  3.46482  2.85658  3.37461     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     14   2.63062  0.48844  2.70064  1.39746     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     15   0.13122  3.46482  2.85658  3.37461     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     16   3.17479  2.64985  3.21962  0.16539     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     17   3.53025  0.11920  3.57549  2.89920     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     18   3.53025  0.11920  3.57549  2.89920     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     19   0.13122  3.46482  2.85658  3.37461     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     20   3.17479  2.64985  3.21962  0.16539     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     21   3.17479  2.64985  3.21962  0.16539     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     22   3.00563  3.67283  0.10826  3.58650     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     23   3.00563  3.67283  0.10826  3.58650     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     24   3.53025  0.11920  3.57549  2.89920     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     25   0.13122  3.46482  2.85658  3.37461     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     26   3.53025  0.11920  3.57549  2.89920     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     27   3.00563  3.67283  0.10826  3.58650     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     28   3.53025  0.11920  3.57549  2.89920     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     29   3.53025  0.11920  3.57549  2.89920     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     30   3.17479  2.64985  3.21962  0.16539     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     31   3.00563  3.67283  0.10826  3.58650     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     32   3.00563  3.67283  0.10826  3.58650     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     33   3.17479  2.64985  3.21962  0.16539     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     34   3.17479  2.64985  3.21962  0.16539     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     35   3.53025  0.11920  3.57549  2.89920     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     36   0.13122  3.46482  2.85658  3.37461     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     37   3.00563  3.67283  0.10826  3.58650     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     38   3.00563  3.67283  0.10826  3.58650     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     39   3.00563  3.67283  0.10826  3.58650     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     40   3.17479  2.64985  3.21962  0.16539     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     41   3.53025  0.11920  3.57549  2.89920     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     42   3.00563  3.67283  0.10826  3.58650     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     43   3.17479  2.64985  3.21962  0.16539     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     44   0.57751  2.35639  2.27395  1.42279     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03510  4.06029  4.06029  1.46634  0.26236  1.09861  0.40547
     45   0.13122  3.46482  2.85658  3.37461     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01770  4.04290        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 40021466
STATS LOCAL MSV       -7.4793  0.72812
STATS LOCAL VITERBI   -8.4338  0.72812
STATS LOCAL FORWARD   -3.4958  0.72812
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.66120  1.39035  1.26616  1.27587
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_foure_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:42 2012
NSEQ  11
EFFN  3.316650
CKSUM 2161723841
STATS LOCAL MSV       -8.0237  0.71932
STATS LOCAL VITERBI   -7.7980  0.71932
STATS LOCAL FORWARD   -4.4690  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62968  1.39846  1.25461  1.30253
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
      1   0.14215  3.37833  2.80067  3.27981      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      2   3.43088  0.13047  3.48043  2.82738      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      3   3.43088  0.13047  3.48043  2.82738      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      4   0.14215  3.37833  2.80067  3.27981      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      5   3.08666  2.59390  3.13489  0.17899      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      6   2.94618  3.58579  0.11737  3.49026      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      7   2.94618  3.58579  0.11737  3.49026      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      8   2.94618  3.58579  0.11737  3.49026      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      9   0.14215  3.37833  2.80067  3.27981      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     10   2.94618  3.58579  0.11737  3.49026     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     11   3.08666  2.59390  3.13489  0.17899     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     12   3.43088  0.13047  3.48043  2.82738     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     13   3.08666  2.59390  3.13489  0.17899     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     14   3.08666  2.59390  3.13489  0.17899     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     15   0.14215  3.37833  2.80067  3.27981     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     16   3.08666  2.59390  3.13489  0.17899     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     17   3.43088  0.13047  3.48043  2.82738     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     18   3.43088  0.13047  3.48043  2.82738     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     19   3.43088  0.13047  3.48043  2.82738     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     20   3.08666  2.59390  3.13489  0.17899     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     21   3.08666  2.59390  3.13489  0.17899     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     22   2.94618  3.58579  0.11737  3.49026     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     23   2.94618  3.58579  0.11737  3.49026     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     24   3.08666  2.59390  3.13489  0.17899     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     25   0.14215  3.37833  2.80067  3.27981     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     26   2.79049  0.34167  2.85747  1.76836     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     27   2.94618  3.58579  0.11737  3.49026     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     28   3.43088  0.13047  3.48043  2.82738     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     29   3.43088  0.13047  3.48043  2.82738     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     30   3.08666  2.59390  3.13489  0.17899     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     31   2.94618  3.58579  0.11737  3.49026     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     32   2.94618  3.58579  0.11737  3.49026     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     33   3.08666  2.59390  3.13489  0.17899     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     34   3.08666  2.59390  3.13489  0.17899     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     35   3.43088  0.13047  3.48043  2.82738     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     36   0.14215  3.37833  2.80067  3.27981     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     37   2.94618  3.58579  0.11737  3.49026     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     38   2.94618  3.58579  0.11737  3.49026     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     39   2.94618  3.58579  0.11737  3.49026     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     40   3.08666  2.59390  3.13489  0.17899     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     41   3.43088  0.13047  3.48043  2.82738     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     42   2.94618  3.58579  0.11737  3.49026     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     43   3.08666  2.59390  3.13489  0.17899     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     44   0.14215  3.37833  2.80067  3.27981     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     45   0.14215  3.37833  2.80067  3.27981     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:48 2012
NSEQ  4
EFFN  3.128906
CKSUM 1932922209
STATS LOCAL MSV       -8.1150  0.71933
STATS LOCAL VITERBI   -7.8447  0.71933
STATS LOCAL FORWARD   -3.8141  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47448  1.33557  1.14043  1.66912
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  0.00000        *
      1   2.90228  3.52232  0.12458  3.42031      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      2   3.35912  0.13939  3.41165  2.77481      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      3   3.35912  0.13939  3.41165  2.77481      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      4   0.15066  3.31617  2.76009  3.21184      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      5   3.35912  0.13939  3.41165  2.77481      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      6   3.35912  0.13939  3.41165  2.77481      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      7   2.90228  3.52232  0.12458  3.42031      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      8   2.90228  3.52232  0.12458  3.42031      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
      9   0.15066  3.31617  2.76009  3.21184      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     10   2.90228  3.52232  0.12458  3.42031     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     11   3.02437  2.55419  3.07496  0.18939     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     12   0.15066  3.31617  2.76009  3.21184     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     13   0.15066  3.31617  2.76009  3.21184     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     14   3.35912  0.13939  3.41165  2.77481     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     15   0.15066  3.31617  2.76009  3.21184     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     16   3.02437  2.55419  3.07496  0.18939     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     17   3.35912  0.13939  3.41165  2.77481     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     18   0.15066  3.31617  2.76009  3.21184     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     19   2.90228  3.52232  0.12458  3.42031     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     20   2.90228  3.52232  0.12458  3.42031     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     21   3.02437  2.55419  3.07496  0.18939     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     22   2.90228  3.52232  0.12458  3.42031     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     23   2.90228  3.52232  0.12458  3.42031     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     24   3.35912  0.13939  3.41165  2.77481     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     25   0.15066  3.31617  2.76009  3.21184     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     26   3.35912  0.13939  3.41165  2.77481     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     27   2.90228  3.52232  0.12458  3.42031     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     28   3.02437  2.55419  3.07496  0.18939     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     29   3.35912  0.13939  3.41165  2.77481     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     30   3.02437  2.55419  3.07496  0.18939     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     31   2.90228  3.52232  0.12458  3.42031     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     32   2.90228  3.52232  0.12458  3.42031     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     33   3.02437  2.55419  3.07496  0.18939     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     34   3.02437  2.55419  3.07496  0.18939     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     35   3.35912  0.13939  3.41165  2.77481     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     36   0.15066  3.31617  2.76009  3.21184     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     37   2.90228  3.52232  0.12458  3.42031     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     38   2.90228  3.52232  0.12458  3.42031     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     39   2.90228  3.52232  0.12458  3.42031     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     40   3.02437  2.55419  3.07496  0.18939     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     41   3.35912  0.13939  3.41165  2.77481     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     42   2.90228  3.52232  0.12458  3.42031     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     43   0.15066  3.31617  2.76009  3.21184     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     44   3.35912  0.13939  3.41165  2.77481     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97573  3.97573  1.46634  0.26236  1.09861  0.40547
     45   0.15066  3.31617  2.76009  3.21184     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01931  3.95679        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:53 2012
NSEQ  5
EFFN  3.393555
CKSUM 2530162273
STATS LOCAL MSV       -7.5822  0.71932
STATS LOCAL VITERBI   -7.7538  0.71932
STATS LOCAL FORWARD   -4.3816  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59593  1.37767  1.31214  1.28782
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  0.00000        *
      1   2.96311  3.61046  0.11471  3.51750      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      2   3.45893  0.12717  3.50729  2.84776      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      3   3.45893  0.12717  3.50729  2.84776      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      4   0.13897  3.40269  2.81647  3.30648      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      5   3.11130  2.60957  3.15859  0.17506      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      6   3.11130  2.60957  3.15859  0.17506      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      7   2.96311  3.61046  0.11471  3.51750      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      8   2.96311  3.61046  0.11471  3.51750      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
      9   0.13897  3.40269  2.81647  3.30648      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     10   2.96311  3.61046  0.11471  3.51750     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     11   3.45893  0.12717  3.50729  2.84776     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     12   0.13897  3.40269  2.81647  3.30648     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     13   0.13897  3.40269  2.81647  3.30648     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     14   3.11130  2.60957  3.15859  0.17506     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     15   0.13897  3.40269  2.81647  3.30648     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     16   3.11130  2.60957  3.15859  0.17506     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     17   3.45893  0.12717  3.50729  2.84776     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     18   3.45893  0.12717  3.50729  2.84776     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     19   3.11130  2.60957  3.15859  0.17506     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     20   3.11130  2.60957  3.15859  0.17506     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     21   3.11130  2.60957  3.15859  0.17506     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     22   2.96311  3.61046  0.11471  3.51750     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     23   2.96311  3.61046  0.11471  3.51750     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     24   3.45893  0.12717  3.50729  2.84776     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     25   0.13897  3.40269  2.81647  3.30648     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     26   3.11130  2.60957  3.15859  0.17506     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     27   2.96311  3.61046  0.11471  3.51750     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     28   3.45893  0.12717  3.50729  2.84776     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     29   3.11130  2.60957  3.15859  0.17506     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     30   3.11130  2.60957  3.15859  0.17506     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     31   3.11130  2.60957  3.15859  0.17506     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     32   2.96311  3.61046  0.11471  3.51750     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     33   3.45893  0.12717  3.50729  2.84776     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     34   3.11130  2.60957  3.15859  0.17506     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     35   3.45893  0.12717  3.50729  2.84776     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     36   0.13897  3.40269  2.81647  3.30648     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     37   2.96311  3.61046  0.11471  3.51750     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     38   2.96311  3.61046  0.11471  3.51750     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     39   2.96311  3.61046  0.11471  3.51750     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     40   3.11130  2.60957  3.15859  0.17506     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     41   3.45893  0.12717  3.50729  2.84776     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     42   2.96311  3.61046  0.11471  3.51750     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     43   3.45893  0.12717  3.50729  2.84776     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     44   0.13897  3.40269  2.81647  3.30648     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03641  4.02420  4.02420  1.46634  0.26236  1.09861  0.40547
     45   0.79222  2.19683  2.17515  1.13191     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01837  4.00616        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:01 2012
NSEQ  2
EFFN  2.000000
CKSUM 333148079
STATS LOCAL MSV       -7.4549  0.72791
STATS LOCAL VITERBI   -8.4904  0.72791
STATS LOCAL FORWARD   -3.4224  0.72791
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74078  1.33732  1.21673  1.32475
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.53331  3.02441  0.20344  2.88069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fouri_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:06 2012
NSEQ  2
EFFN  2.000000
CKSUM 260246692
STATS LOCAL MSV       -7.3876  0.72866
STATS LOCAL VITERBI   -8.2977  0.72866
STATS LOCAL FORWARD   -3.4092  0.72866
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.79394  1.27631  1.26577  1.29972
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   1.03732  1.95876  1.96551  1.00928     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:11 2012
NSEQ  2
EFFN  2.000000
CKSUM 1948886469
STATS LOCAL MSV       -7.4799  0.72830
STATS LOCAL VITERBI   -8.3137  0.72830
STATS LOCAL FORWARD   -3.4645  0.72830
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82855  1.27493  1.32534  1.22353
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourk_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:16 2012
NSEQ  9
EFFN  3.247559
CKSUM 3053590484
STATS LOCAL MSV       -7.9269  0.71933
STATS LOCAL VITERBI   -7.7723  0.71933
STATS LOCAL FORWARD   -3.9915  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63624  1.31777  1.31835  1.30940
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  0.00000        *
      1   2.93046  3.56298  0.11991  3.46510      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      2   3.40502  0.13361  3.45566  2.80851      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      3   3.40502  0.13361  3.45566  2.80851      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      4   0.14515  3.35591  2.78608  3.25528      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      5   3.06409  2.57953  3.11318  0.18268      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      6   3.06409  2.57953  3.11318  0.18268      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      7   2.93046  3.56298  0.11991  3.46510      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      8   2.93046  3.56298  0.11991  3.46510      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
      9   0.14515  3.35591  2.78608  3.25528      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     10   2.93046  3.56298  0.11991  3.46510     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     11   3.06409  2.57953  3.11318  0.18268     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     12   3.40502  0.13361  3.45566  2.80851     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     13   0.14515  3.35591  2.78608  3.25528     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     14   3.40502  0.13361  3.45566  2.80851     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     15   3.06409  2.57953  3.11318  0.18268     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     16   3.06409  2.57953  3.11318  0.18268     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     17   3.40502  0.13361  3.45566  2.80851     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     18   3.40502  0.13361  3.45566  2.80851     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     19   3.06409  2.57953  3.11318  0.18268     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     20   0.14515  3.35591  2.78608  3.25528     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     21   3.06409  2.57953  3.11318  0.18268     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     22   2.93046  3.56298  0.11991  3.46510     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     23   2.93046  3.56298  0.11991  3.46510     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     24   3.40502  0.13361  3.45566  2.80851     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     25   0.14515  3.35591  2.78608  3.25528     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     26   3.40502  0.13361  3.45566  2.80851     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     27   2.93046  3.56298  0.11991  3.46510     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     28   3.40502  0.13361  3.45566  2.80851     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     29   3.40502  0.13361  3.45566  2.80851     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     30   3.06409  2.57953  3.11318  0.18268     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     31   2.93046  3.56298  0.11991  3.46510     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     32   2.93046  3.56298  0.11991  3.46510     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     33   3.06409  2.57953  3.11318  0.18268     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     34   3.06409  2.57953  3.11318  0.18268     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     35   3.40502  0.13361  3.45566  2.80851     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     36   0.14515  3.35591  2.78608  3.25528     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     37   2.93046  3.56298  0.11991  3.46510     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     38   2.93046  3.56298  0.11991  3.46510     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     39   2.93046  3.56298  0.11991  3.46510     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     40   3.06409  2.57953  3.11318  0.18268     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     41   3.40502  0.13361  3.45566  2.80851     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     42   0.14515  3.35591  2.78608  3.25528     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     43   3.06409  2.57953  3.11318  0.18268     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     44   3.06409  2.57953  3.11318  0.18268     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03740  3.99775  3.99775  1.46634  0.26236  1.09861  0.40547
     45   0.14515  3.35591  2.78608  3.25528     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97923        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourl_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:21 2012
NSEQ  11
EFFN  3.338135
CKSUM 767105334
STATS LOCAL MSV       -8.1570  0.71932
STATS LOCAL VITERBI   -7.7500  0.71932
STATS LOCAL FORWARD   -4.0357  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55301  1.25359  1.40308  1.35840
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  0.00000        *
      1   2.95097  3.59276  0.11661  3.49795      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      2   3.43879  0.12953  3.48801  2.83314      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      3   3.43879  0.12953  3.48801  2.83314      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      4   0.14124  3.38520  2.80513  3.28733      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      5   3.09359  2.59831  3.14156  0.17788      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      6   3.09359  2.59831  3.14156  0.17788      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      7   2.95097  3.59276  0.11661  3.49795      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      8   2.95097  3.59276  0.11661  3.49795      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
      9   0.14124  3.38520  2.80513  3.28733      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     10   3.09359  2.59831  3.14156  0.17788     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     11   3.09359  2.59831  3.14156  0.17788     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     12   3.43879  0.12953  3.48801  2.83314     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     13   0.14124  3.38520  2.80513  3.28733     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     14   3.43879  0.12953  3.48801  2.83314     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     15   0.14124  3.38520  2.80513  3.28733     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     16   3.09359  2.59831  3.14156  0.17788     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     17   3.43879  0.12953  3.48801  2.83314     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     18   3.43879  0.12953  3.48801  2.83314     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     19   3.09359  2.59831  3.14156  0.17788     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     20   3.43879  0.12953  3.48801  2.83314     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     21   3.09359  2.59831  3.14156  0.17788     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     22   2.95097  3.59276  0.11661  3.49795     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     23   2.95097  3.59276  0.11661  3.49795     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     24   3.43879  0.12953  3.48801  2.83314     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     25   0.14124  3.38520  2.80513  3.28733     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     26   3.43879  0.12953  3.48801  2.83314     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     27   2.95097  3.59276  0.11661  3.49795     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     28   3.43879  0.12953  3.48801  2.83314     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     29   3.43879  0.12953  3.48801  2.83314     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     30   3.09359  2.59831  3.14156  0.17788     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     31   2.95097  3.59276  0.11661  3.49795     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     32   2.95097  3.59276  0.11661  3.49795     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     33   3.09359  2.59831  3.14156  0.17788     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     34   3.09359  2.59831  3.14156  0.17788     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     35   3.43879  0.12953  3.48801  2.83314     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     36   0.14124  3.38520  2.80513  3.28733     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     37   2.95097  3.59276  0.11661  3.49795     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     38   2.95097  3.59276  0.11661  3.49795     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     39   2.37704  2.60293  0.39274  1.84572     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     40   3.09359  2.59831  3.14156  0.17788     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     41   3.43879  0.12953  3.48801  2.83314     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     42   0.14124  3.38520  2.80513  3.28733     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     43   3.09359  2.59831  3.14156  0.17788     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     44   0.14124  3.38520  2.80513  3.28733     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03678  4.01424  4.01424  1.46634  0.26236  1.09861  0.40547
     45   0.14124  3.38520  2.80513  3.28733     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01856  3.99602        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourm_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:27 2012
NSEQ  3
EFFN  3.000000
CKSUM 2504187717
STATS LOCAL MSV       -8.1581  0.72043
STATS LOCAL VITERBI   -8.0441  0.72043
STATS LOCAL FORWARD   -4.0704  0.72043
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.71119  1.52314  1.19729  1.20627
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   0.15719  3.27118  2.73043  3.16274     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourn_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:32 2012
NSEQ  3
EFFN  3.000000
CKSUM 4061062390
STATS LOCAL MSV       -7.9683  0.72135
STATS LOCAL VITERBI   -7.9020  0.72135
STATS LOCAL FORWARD   -4.0040  0.72135
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.87942  1.46963  1.21765  1.13511
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   1.35471  2.59260  0.54349  2.44834     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.43440  0.61908  2.50724  1.22957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fouro_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:37 2012
NSEQ  2
EFFN  2.000000
CKSUM 1042054282
STATS LOCAL MSV       -7.6481  0.72791
STATS LOCAL VITERBI   -8.4383  0.72791
STATS LOCAL FORWARD   -3.5360  0.72791
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45660  1.45908  1.26148  1.38116
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourp_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:42 2012
NSEQ  2
EFFN  2.000000
CKSUM 3357078393
STATS LOCAL MSV       -7.3153  0.72879
STATS LOCAL VITERBI   -8.3213  0.72879
STATS LOCAL FORWARD   -3.5251  0.72879
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73799  1.30923  1.32025  1.24818
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.15554  1.00938  2.23102  0.88601      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:47 2012
NSEQ  4
EFFN  3.324219
CKSUM 3293610726
STATS LOCAL MSV       -7.9677  0.71933
STATS LOCAL VITERBI   -7.8423  0.71933
STATS LOCAL FORWARD   -4.3589  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63635  1.44298  1.38451  1.14368
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   3.43368  0.13014  3.48311  2.82941      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   2.94787  3.58826  0.11710  3.49298      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   3.43368  0.13014  3.48311  2.82941      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.43368  0.13014  3.48311  2.82941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   0.14183  3.38076  2.80224  3.28247      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   3.08911  2.59546  3.13724  0.17860      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.08911  2.59546  3.13724  0.17860      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   2.94787  3.58826  0.11710  3.49298      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   2.94787  3.58826  0.11710  3.49298      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   0.14183  3.38076  2.80224  3.28247     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   3.08911  2.59546  3.13724  0.17860     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   3.08911  2.59546  3.13724  0.17860     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   3.08911  2.59546  3.13724  0.17860     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.08911  2.59546  3.13724  0.17860     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   0.14183  3.38076  2.80224  3.28247     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   3.08911  2.59546  3.13724  0.17860     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   3.43368  0.13014  3.48311  2.82941     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   3.43368  0.13014  3.48311  2.82941     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   3.08911  2.59546  3.13724  0.17860     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   3.08911  2.59546  3.13724  0.17860     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   3.08911  2.59546  3.13724  0.17860     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   2.94787  3.58826  0.11710  3.49298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   2.94787  3.58826  0.11710  3.49298     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   3.43368  0.13014  3.48311  2.82941     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   0.14183  3.38076  2.80224  3.28247     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   3.43368  0.13014  3.48311  2.82941     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   2.94787  3.58826  0.11710  3.49298     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.08911  2.59546  3.13724  0.17860     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.43368  0.13014  3.48311  2.82941     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   3.08911  2.59546  3.13724  0.17860     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   2.94787  3.58826  0.11710  3.49298     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   0.14183  3.38076  2.80224  3.28247     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   3.08911  2.59546  3.13724  0.17860     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   3.08911  2.59546  3.13724  0.17860     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   3.43368  0.13014  3.48311  2.82941     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   0.14183  3.38076  2.80224  3.28247     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   2.94787  3.58826  0.11710  3.49298     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   2.94787  3.58826  0.11710  3.49298     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   2.94787  3.58826  0.11710  3.49298     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   3.08911  2.59546  3.13724  0.17860     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   3.43368  0.13014  3.48311  2.82941     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   2.94787  3.58826  0.11710  3.49298     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   3.08911  2.59546  3.13724  0.17860     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   0.14183  3.38076  2.80224  3.28247     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   0.14183  3.38076  2.80224  3.28247     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourr_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:52 2012
NSEQ  3
EFFN  3.000000
CKSUM 865624913
STATS LOCAL MSV       -8.0392  0.72080
STATS LOCAL VITERBI   -7.7818  0.72080
STATS LOCAL FORWARD   -4.1310  0.72080
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54500  1.36606  1.37837  1.27443
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.43088  1.34923  2.50068  0.56112     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   3.30705  0.14631  3.36166  2.73626     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fours_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:33:57 2012
NSEQ  6
EFFN  3.454102
CKSUM 1542454552
STATS LOCAL MSV       -7.5502  0.71932
STATS LOCAL VITERBI   -7.9280  0.71932
STATS LOCAL FORWARD   -4.1162  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.91213  1.23481  1.25281  1.28865
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  0.00000        *
      1   2.97603  3.62936  0.11271  3.53839      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      2   3.48048  0.12470  3.52791  2.86336      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      3   3.48048  0.12470  3.52791  2.86336      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      4   3.13036  2.62167  3.17691  0.17209      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      5   3.13036  2.62167  3.17691  0.17209      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      6   2.97603  3.62936  0.11271  3.53839      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      7   2.97603  3.62936  0.11271  3.53839      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      8   2.97603  3.62936  0.11271  3.53839      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
      9   0.13658  3.42143  2.82860  3.32702      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     10   2.53075  1.35523  2.59881  0.53077     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     11   3.48048  0.12470  3.52791  2.86336     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     12   3.13036  2.62167  3.17691  0.17209     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     13   0.13658  3.42143  2.82860  3.32702     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     14   3.48048  0.12470  3.52791  2.86336     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     15   0.13658  3.42143  2.82860  3.32702     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     16   3.13036  2.62167  3.17691  0.17209     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     17   3.48048  0.12470  3.52791  2.86336     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     18   3.48048  0.12470  3.52791  2.86336     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     19   3.48048  0.12470  3.52791  2.86336     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     20   3.13036  2.62167  3.17691  0.17209     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     21   3.13036  2.62167  3.17691  0.17209     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     22   2.97603  3.62936  0.11271  3.53839     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     23   2.97603  3.62936  0.11271  3.53839     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     24   3.48048  0.12470  3.52791  2.86336     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     25   0.13658  3.42143  2.82860  3.32702     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     26   3.48048  0.12470  3.52791  2.86336     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     27   2.97603  3.62936  0.11271  3.53839     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     28   3.48048  0.12470  3.52791  2.86336     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     29   3.48048  0.12470  3.52791  2.86336     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     30   3.13036  2.62167  3.17691  0.17209     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     31   2.97603  3.62936  0.11271  3.53839     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     32   2.97603  3.62936  0.11271  3.53839     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     33   3.13036  2.62167  3.17691  0.17209     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     34   3.13036  2.62167  3.17691  0.17209     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     35   3.48048  0.12470  3.52791  2.86336     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     36   0.13658  3.42143  2.82860  3.32702     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     37   2.97603  3.62936  0.11271  3.53839     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     38   2.97603  3.62936  0.11271  3.53839     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     39   2.97603  3.62936  0.11271  3.53839     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     40   3.13036  2.62167  3.17691  0.17209     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     41   3.48048  0.12470  3.52791  2.86336     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     42   2.97603  3.62936  0.11271  3.53839     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     43   3.13036  2.62167  3.17691  0.17209     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     44   1.31680  2.17756  2.25927  0.66502     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03601  4.03497  4.03497  1.46634  0.26236  1.09861  0.40547
     45   3.13036  2.62167  3.17691  0.17209     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01817  4.01712        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourt_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:34:02 2012
NSEQ  6
EFFN  3.225586
CKSUM 1438411373
STATS LOCAL MSV       -8.1763  0.71932
STATS LOCAL VITERBI   -7.7716  0.71932
STATS LOCAL FORWARD   -3.7753  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72081  1.45719  1.14065  1.31462
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  0.00000        *
      1   2.92536  3.55560  0.12074  3.45696      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      2   3.39667  0.13464  3.44765  2.80239      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      3   3.39667  0.13464  3.44765  2.80239      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      4   3.05683  2.57491  3.10619  0.18389      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      5   2.92536  3.55560  0.12074  3.45696      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      6   0.14614  3.34867  2.78135  3.24736      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      7   2.92536  3.55560  0.12074  3.45696      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      8   2.92536  3.55560  0.12074  3.45696      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
      9   3.05683  2.57491  3.10619  0.18389      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     10   2.92536  3.55560  0.12074  3.45696     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     11   3.05683  2.57491  3.10619  0.18389     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     12   3.05683  2.57491  3.10619  0.18389     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     13   0.14614  3.34867  2.78135  3.24736     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     14   0.14614  3.34867  2.78135  3.24736     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     15   0.14614  3.34867  2.78135  3.24736     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     16   3.05683  2.57491  3.10619  0.18389     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     17   3.39667  0.13464  3.44765  2.80239     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     18   3.39667  0.13464  3.44765  2.80239     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     19   3.05683  2.57491  3.10619  0.18389     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     20   3.39667  0.13464  3.44765  2.80239     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     21   3.05683  2.57491  3.10619  0.18389     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     22   2.92536  3.55560  0.12074  3.45696     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     23   2.92536  3.55560  0.12074  3.45696     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     24   3.39667  0.13464  3.44765  2.80239     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     25   0.14614  3.34867  2.78135  3.24736     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     26   3.39667  0.13464  3.44765  2.80239     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     27   2.92536  3.55560  0.12074  3.45696     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     28   2.92536  3.55560  0.12074  3.45696     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     29   3.39667  0.13464  3.44765  2.80239     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     30   3.05683  2.57491  3.10619  0.18389     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     31   2.92536  3.55560  0.12074  3.45696     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     32   2.92536  3.55560  0.12074  3.45696     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     33   3.05683  2.57491  3.10619  0.18389     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     34   3.05683  2.57491  3.10619  0.18389     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     35   3.39667  0.13464  3.44765  2.80239     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     36   0.14614  3.34867  2.78135  3.24736     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     37   2.92536  3.55560  0.12074  3.45696     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     38   2.92536  3.55560  0.12074  3.45696     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     39   2.92536  3.55560  0.12074  3.45696     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     40   3.05683  2.57491  3.10619  0.18389     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     41   3.39667  0.13464  3.44765  2.80239     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     42   2.92536  3.55560  0.12074  3.45696     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     43   3.05683  2.57491  3.10619  0.18389     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     44   3.05683  2.57491  3.10619  0.18389     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03756  3.99371  3.99371  1.46634  0.26236  1.09861  0.40547
     45   0.14614  3.34867  2.78135  3.24736     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01896  3.97511        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:24 2012
NSEQ  13
EFFN  3.526123
CKSUM 2258401781
STATS LOCAL MSV       -7.2688  0.71933
STATS LOCAL VITERBI   -7.6651  0.71933
STATS LOCAL FORWARD   -4.0404  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.36154  2.16683  1.28426  1.04316
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  0.00000        *
      1   3.15264  2.63580  3.19832  0.16869      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      2   0.13385  3.44324  2.84268  3.35093      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      3   3.15264  2.63580  3.19832  0.16869      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      4   3.15264  2.63580  3.19832  0.16869      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      5   3.15264  2.63580  3.19832  0.16869      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      6   0.13385  3.44324  2.84268  3.35093      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      7   2.99096  3.65126  0.11044  3.56262      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      8   3.15264  2.63580  3.19832  0.16869      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      9   3.15264  2.63580  3.19832  0.16869      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     10   0.13385  3.44324  2.84268  3.35093     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     11   2.99096  3.65126  0.11044  3.56262     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     12   0.75959  2.55517  1.00847  2.41146     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     13   0.13385  3.44324  2.84268  3.35093     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     14   3.15264  2.63580  3.19832  0.16869     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     15   2.99096  3.65126  0.11044  3.56262     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     16   2.99096  3.65126  0.11044  3.56262     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     17   3.50552  0.12189  3.55185  2.88142     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     18   3.15264  2.63580  3.19832  0.16869     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     19   3.15264  2.63580  3.19832  0.16869     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     20   2.99096  3.65126  0.11044  3.56262     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     21   0.13385  3.44324  2.84268  3.35093     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     22   2.99096  3.65126  0.11044  3.56262     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     23   2.99096  3.65126  0.11044  3.56262     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     24   3.15264  2.63580  3.19832  0.16869     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     25   3.15264  2.63580  3.19832  0.16869     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     26   3.50552  0.12189  3.55185  2.88142     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     27   0.13385  3.44324  2.84268  3.35093     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     28   3.15264  2.63580  3.19832  0.16869     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     29   0.13385  3.44324  2.84268  3.35093     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     30   3.15264  2.63580  3.19832  0.16869     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     31   2.99096  3.65126  0.11044  3.56262     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     32   2.99096  3.65126  0.11044  3.56262     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     33   3.15264  2.63580  3.19832  0.16869     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     34   3.15264  2.63580  3.19832  0.16869     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     35   2.99096  3.65126  0.11044  3.56262     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     36   0.13385  3.44324  2.84268  3.35093     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     37   2.99096  3.65126  0.11044  3.56262     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     38   3.15264  2.63580  3.19832  0.16869     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     39   2.99096  3.65126  0.11044  3.56262     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     40   3.50552  0.12189  3.55185  2.88142     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     41   3.15264  2.63580  3.19832  0.16869     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     42   0.13385  3.44324  2.84268  3.35093     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     43   3.15264  2.63580  3.19832  0.16869     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     44   0.13385  3.44324  2.84268  3.35093     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     45   0.13385  3.44324  2.84268  3.35093     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01793  4.03001        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:36 2012
NSEQ  6
EFFN  3.506836
CKSUM 1997454489
STATS LOCAL MSV       -7.2053  0.71932
STATS LOCAL VITERBI   -7.6533  0.71932
STATS LOCAL FORWARD   -4.0088  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81914  1.45131  1.19033  1.20581
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  0.00000        *
      1   2.98701  3.64546  0.11104  3.55619      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      2   3.49888  0.12263  3.54550  2.87663      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      3   3.49888  0.12263  3.54550  2.87663      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      4   0.13457  3.43745  2.83894  3.34459      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      5   3.49888  0.12263  3.54550  2.87663      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      6   3.14671  2.63204  3.19263  0.16959      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      7   0.13457  3.43745  2.83894  3.34459      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      8   2.98701  3.64546  0.11104  3.55619      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
      9   2.98701  3.64546  0.11104  3.55619      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     10   2.43781  0.94522  2.50951  0.81476     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     11   3.14671  2.63204  3.19263  0.16959     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     12   3.14671  2.63204  3.19263  0.16959     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     13   2.98701  3.64546  0.11104  3.55619     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     14   2.53262  0.59011  2.60406  1.22993     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     15   3.14671  2.63204  3.19263  0.16959     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     16   3.49888  0.12263  3.54550  2.87663     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     17   3.49888  0.12263  3.54550  2.87663     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     18   3.14671  2.63204  3.19263  0.16959     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     19   0.13457  3.43745  2.83894  3.34459     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     20   3.14671  2.63204  3.19263  0.16959     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     21   3.14671  2.63204  3.19263  0.16959     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     22   2.98701  3.64546  0.11104  3.55619     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     23   2.98701  3.64546  0.11104  3.55619     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     24   3.49888  0.12263  3.54550  2.87663     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     25   0.13457  3.43745  2.83894  3.34459     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     26   3.49888  0.12263  3.54550  2.87663     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     27   2.98701  3.64546  0.11104  3.55619     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     28   3.14671  2.63204  3.19263  0.16959     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     29   3.49888  0.12263  3.54550  2.87663     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     30   3.14671  2.63204  3.19263  0.16959     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     31   2.98701  3.64546  0.11104  3.55619     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     32   2.98701  3.64546  0.11104  3.55619     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     33   3.14671  2.63204  3.19263  0.16959     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     34   3.14671  2.63204  3.19263  0.16959     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     35   2.98701  3.64546  0.11104  3.55619     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     36   0.13457  3.43745  2.83894  3.34459     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     37   2.98701  3.64546  0.11104  3.55619     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     38   2.98701  3.64546  0.11104  3.55619     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     39   2.98701  3.64546  0.11104  3.55619     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     40   3.14671  2.63204  3.19263  0.16959     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     41   3.49888  0.12263  3.54550  2.87663     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     42   2.98701  3.64546  0.11104  3.55619     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     43   3.14671  2.63204  3.19263  0.16959     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     44   0.13457  3.43745  2.83894  3.34459     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03567  4.04425  4.04425  1.46634  0.26236  1.09861  0.40547
     45   3.14671  2.63204  3.19263  0.16959     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01800  4.02657        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_nineteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 2976878512
STATS LOCAL MSV       -7.5610  0.72760
STATS LOCAL VITERBI   -8.2006  0.72760
STATS LOCAL FORWARD   -3.4835  0.72760
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.74298  1.29095  1.16722  1.43229
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:30:35 2012
NSEQ  9
EFFN  3.291504
CKSUM 2632514188
STATS LOCAL MSV       -8.0045  0.71932
STATS LOCAL VITERBI   -7.8075  0.71932
STATS LOCAL FORWARD   -3.8898  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.95617  1.19844  1.04918  1.57643
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  0.00000        *
      1   2.94052  3.57756  0.11828  3.48118      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      2   3.42154  0.13160  3.47149  2.82057      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      3   2.94052  3.57756  0.11828  3.48118      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      4   2.94052  3.57756  0.11828  3.48118      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      5   3.42154  0.13160  3.47149  2.82057      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      6   3.42154  0.13160  3.47149  2.82057      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      7   0.14323  3.37023  2.79540  3.27094      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      8   3.07849  2.58870  3.12703  0.18032      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
      9   0.14323  3.37023  2.79540  3.27094      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     10   2.94052  3.57756  0.11828  3.48118     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     11   2.94052  3.57756  0.11828  3.48118     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     12   3.42154  0.13160  3.47149  2.82057     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     13   3.07849  2.58870  3.12703  0.18032     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     14   3.07849  2.58870  3.12703  0.18032     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     15   2.94052  3.57756  0.11828  3.48118     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     16   3.42154  0.13160  3.47149  2.82057     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     17   3.42154  0.13160  3.47149  2.82057     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     18   3.07849  2.58870  3.12703  0.18032     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     19   0.37118  2.79453  1.71935  2.66280     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     20   3.07849  2.58870  3.12703  0.18032     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     21   2.94052  3.57756  0.11828  3.48118     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     22   2.94052  3.57756  0.11828  3.48118     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     23   3.42154  0.13160  3.47149  2.82057     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     24   3.42154  0.13160  3.47149  2.82057     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     25   0.14323  3.37023  2.79540  3.27094     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     26   3.42154  0.13160  3.47149  2.82057     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     27   2.94052  3.57756  0.11828  3.48118     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     28   3.07849  2.58870  3.12703  0.18032     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     29   3.42154  0.13160  3.47149  2.82057     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     30   3.07849  2.58870  3.12703  0.18032     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     31   2.94052  3.57756  0.11828  3.48118     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     32   2.94052  3.57756  0.11828  3.48118     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     33   3.42154  0.13160  3.47149  2.82057     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     34   3.42154  0.13160  3.47149  2.82057     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     35   2.94052  3.57756  0.11828  3.48118     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     36   0.14323  3.37023  2.79540  3.27094     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     37   2.94052  3.57756  0.11828  3.48118     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     38   2.29538  1.79342  0.45179  2.33929     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     39   2.94052  3.57756  0.11828  3.48118     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     40   3.07849  2.58870  3.12703  0.18032     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     41   3.42154  0.13160  3.47149  2.82057     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     42   2.94052  3.57756  0.11828  3.48118     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     43   2.94052  3.57756  0.11828  3.48118     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     44   3.42154  0.13160  3.47149  2.82057     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00579  4.00579  1.46634  0.26236  1.09861  0.40547
     45   3.07849  2.58870  3.12703  0.18032     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98741        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_oneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:30:43 2012
NSEQ  4
EFFN  3.074219
CKSUM 2141832487
STATS LOCAL MSV       -8.0288  0.71933
STATS LOCAL VITERBI   -7.6965  0.71933
STATS LOCAL FORWARD   -3.8244  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.04658  1.16114  0.99931  1.66304
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  0.00000        *
      1   2.88875  3.50292  0.12688  3.39898      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      2   3.33731  0.14224  3.39072  2.75871      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      3   2.88875  3.50292  0.12688  3.39898      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      4   2.88875  3.50292  0.12688  3.39898      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      5   3.33731  0.14224  3.39072  2.75871      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      6   3.33731  0.14224  3.39072  2.75871      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      7   2.88875  3.50292  0.12688  3.39898      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      8   3.00564  2.54221  3.05693  0.19265      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
      9   0.15336  3.29732  2.74769  3.19126      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     10   2.88875  3.50292  0.12688  3.39898     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     11   2.88875  3.50292  0.12688  3.39898     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     12   3.33731  0.14224  3.39072  2.75871     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     13   3.00564  2.54221  3.05693  0.19265     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     14   3.00564  2.54221  3.05693  0.19265     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     15   2.88875  3.50292  0.12688  3.39898     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     16   3.33731  0.14224  3.39072  2.75871     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     17   3.33731  0.14224  3.39072  2.75871     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     18   3.00564  2.54221  3.05693  0.19265     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     19   0.15336  3.29732  2.74769  3.19126     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     20   3.33731  0.14224  3.39072  2.75871     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     21   2.88875  3.50292  0.12688  3.39898     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     22   2.88875  3.50292  0.12688  3.39898     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     23   3.33731  0.14224  3.39072  2.75871     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     24   3.33731  0.14224  3.39072  2.75871     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     25   0.15336  3.29732  2.74769  3.19126     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     26   3.33731  0.14224  3.39072  2.75871     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     27   2.88875  3.50292  0.12688  3.39898     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     28   3.00564  2.54221  3.05693  0.19265     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     29   3.33731  0.14224  3.39072  2.75871     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     30   3.00564  2.54221  3.05693  0.19265     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     31   2.88875  3.50292  0.12688  3.39898     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     32   2.88875  3.50292  0.12688  3.39898     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     33   3.33731  0.14224  3.39072  2.75871     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     34   3.33731  0.14224  3.39072  2.75871     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     35   2.88875  3.50292  0.12688  3.39898     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     36   0.15336  3.29732  2.74769  3.19126     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     37   2.88875  3.50292  0.12688  3.39898     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     38   2.88875  3.50292  0.12688  3.39898     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     39   2.88875  3.50292  0.12688  3.39898     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     40   3.00564  2.54221  3.05693  0.19265     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     41   3.33731  0.14224  3.39072  2.75871     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     42   2.88875  3.50292  0.12688  3.39898     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     43   2.88875  3.50292  0.12688  3.39898     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     44   3.33731  0.14224  3.39072  2.75871     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03866  3.96542  3.96542  1.46634  0.26236  1.09861  0.40547
     45   3.00564  2.54221  3.05693  0.19265     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01952  3.94627        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:30:49 2012
NSEQ  20
EFFN  3.178711
CKSUM 1515020791
STATS LOCAL MSV       -7.9446  0.71931
STATS LOCAL VITERBI   -7.7967  0.71931
STATS LOCAL FORWARD   -4.1571  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92667  1.26232  1.04143  1.52134
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
      1   2.91430  3.53962  0.12257  3.43936      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      2   3.37862  0.13690  3.43035  2.78916      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      3   2.91430  3.53962  0.12257  3.43936      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      4   2.91430  3.53962  0.12257  3.43936      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      5   3.37862  0.13690  3.43035  2.78916      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      6   3.04119  2.56493  3.09115  0.18651      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      7   0.14829  3.33304  2.77114  3.23028      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      8   3.37862  0.13690  3.43035  2.78916      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      9   2.91430  3.53962  0.12257  3.43936      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     10   2.91430  3.53962  0.12257  3.43936     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     11   2.91430  3.53962  0.12257  3.43936     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     12   0.14829  3.33304  2.77114  3.23028     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     13   3.04119  2.56493  3.09115  0.18651     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     14   0.14829  3.33304  2.77114  3.23028     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     15   3.04119  2.56493  3.09115  0.18651     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     16   3.37862  0.13690  3.43035  2.78916     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     17   3.37862  0.13690  3.43035  2.78916     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     18   3.04119  2.56493  3.09115  0.18651     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     19   2.91430  3.53962  0.12257  3.43936     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     20   3.04119  2.56493  3.09115  0.18651     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     21   2.91430  3.53962  0.12257  3.43936     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     22   2.91430  3.53962  0.12257  3.43936     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     23   3.37862  0.13690  3.43035  2.78916     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     24   3.37862  0.13690  3.43035  2.78916     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     25   0.14829  3.33304  2.77114  3.23028     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     26   3.37862  0.13690  3.43035  2.78916     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     27   2.91430  3.53962  0.12257  3.43936     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     28   2.71071  1.85835  2.77216  0.33540     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     29   3.37862  0.13690  3.43035  2.78916     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     30   3.04119  2.56493  3.09115  0.18651     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     31   2.91430  3.53962  0.12257  3.43936     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     32   3.04119  2.56493  3.09115  0.18651     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     33   3.37862  0.13690  3.43035  2.78916     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     34   3.37862  0.13690  3.43035  2.78916     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     35   2.91430  3.53962  0.12257  3.43936     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     36   0.14829  3.33304  2.77114  3.23028     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     37   2.91430  3.53962  0.12257  3.43936     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     38   2.91430  3.53962  0.12257  3.43936     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     39   2.91430  3.53962  0.12257  3.43936     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     40   3.04119  2.56493  3.09115  0.18651     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     41   3.37862  0.13690  3.43035  2.78916     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     42   2.91430  3.53962  0.12257  3.43936     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     43   2.91430  3.53962  0.12257  3.43936     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     44   3.37862  0.13690  3.43035  2.78916     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     45   3.04119  2.56493  3.09115  0.18651     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_oned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:30:56 2012
NSEQ  9
EFFN  3.212402
CKSUM 274027828
STATS LOCAL MSV       -8.1725  0.71931
STATS LOCAL VITERBI   -7.7872  0.71931
STATS LOCAL FORWARD   -3.7945  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.07732  1.14229  0.94269  1.79536
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  0.00000        *
      1   2.92227  3.55113  0.12125  3.45204      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      2   3.39162  0.13527  3.44282  2.79869      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      3   2.92227  3.55113  0.12125  3.45204      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      4   2.92227  3.55113  0.12125  3.45204      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      5   3.39162  0.13527  3.44282  2.79869      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      6   3.39162  0.13527  3.44282  2.79869      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      7   2.92227  3.55113  0.12125  3.45204      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      8   3.39162  0.13527  3.44282  2.79869      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
      9   2.92227  3.55113  0.12125  3.45204      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     10   2.92227  3.55113  0.12125  3.45204     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     11   2.92227  3.55113  0.12125  3.45204     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     12   0.36910  2.78519  1.73448  2.65307     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     13   3.05245  2.57211  3.10198  0.18462     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     14   0.14674  3.34430  2.77850  3.24258     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     15   3.05245  2.57211  3.10198  0.18462     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     16   3.39162  0.13527  3.44282  2.79869     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     17   3.39162  0.13527  3.44282  2.79869     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     18   3.39162  0.13527  3.44282  2.79869     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     19   2.92227  3.55113  0.12125  3.45204     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     20   3.05245  2.57211  3.10198  0.18462     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     21   2.92227  3.55113  0.12125  3.45204     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     22   2.92227  3.55113  0.12125  3.45204     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     23   3.39162  0.13527  3.44282  2.79869     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     24   3.39162  0.13527  3.44282  2.79869     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     25   0.14674  3.34430  2.77850  3.24258     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     26   3.39162  0.13527  3.44282  2.79869     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     27   2.92227  3.55113  0.12125  3.45204     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     28   2.39765  1.07670  2.46934  0.72627     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     29   3.39162  0.13527  3.44282  2.79869     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     30   3.05245  2.57211  3.10198  0.18462     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     31   2.92227  3.55113  0.12125  3.45204     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     32   2.92227  3.55113  0.12125  3.45204     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     33   3.39162  0.13527  3.44282  2.79869     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     34   3.39162  0.13527  3.44282  2.79869     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     35   2.92227  3.55113  0.12125  3.45204     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     36   0.14674  3.34430  2.77850  3.24258     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     37   2.92227  3.55113  0.12125  3.45204     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     38   2.92227  3.55113  0.12125  3.45204     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     39   2.92227  3.55113  0.12125  3.45204     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     40   3.05245  2.57211  3.10198  0.18462     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     41   3.39162  0.13527  3.44282  2.79869     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     42   2.92227  3.55113  0.12125  3.45204     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     43   2.92227  3.55113  0.12125  3.45204     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     44   3.39162  0.13527  3.44282  2.79869     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03765  3.99128  3.99128  1.46634  0.26236  1.09861  0.40547
     45   3.05245  2.57211  3.10198  0.18462     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01900  3.97263        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:04 2012
NSEQ  22
EFFN  3.391846
CKSUM 2940126106
STATS LOCAL MSV       -7.2020  0.71933
STATS LOCAL VITERBI   -7.7925  0.71933
STATS LOCAL FORWARD   -4.0922  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.06447  1.20648  1.02736  1.53286
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  0.00000        *
      1   2.96274  3.60992  0.11476  3.51690      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      2   3.45832  0.12724  3.50670  2.84731      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      3   2.96274  3.60992  0.11476  3.51690      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      4   2.96274  3.60992  0.11476  3.51690      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      5   3.45832  0.12724  3.50670  2.84731      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      6   3.07353  0.22642  3.13365  2.18210      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      7   0.13904  3.40215  2.81612  3.30590      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      8   2.78093  1.89402  2.84051  0.31587      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
      9   2.96274  3.60992  0.11476  3.51690      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     10   2.96274  3.60992  0.11476  3.51690     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     11   2.96274  3.60992  0.11476  3.51690     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     12   3.11076  2.60922  3.15807  0.17515     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     13   3.11076  2.60922  3.15807  0.17515     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     14   1.58973  2.23205  2.37090  0.51867     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     15   0.36529  2.81953  1.72361  2.68896     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     16   3.45832  0.12724  3.50670  2.84731     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     17   3.45832  0.12724  3.50670  2.84731     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     18   3.11076  2.60922  3.15807  0.17515     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     19   2.96274  3.60992  0.11476  3.51690     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     20   3.11076  2.60922  3.15807  0.17515     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     21   2.96274  3.60992  0.11476  3.51690     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     22   2.96274  3.60992  0.11476  3.51690     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.12907  4.02389  2.27105  1.46634  0.26236  1.09861  0.40547
     23   3.27131  0.15130  3.32731  2.70960     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03989  3.93471  3.93471  1.46634  0.26236  0.29755  1.35725
     24   3.45832  0.12724  3.50670  2.84731     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     25   0.13904  3.40215  2.81612  3.30590     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     26   3.45832  0.12724  3.50670  2.84731     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     27   2.96274  3.60992  0.11476  3.51690     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     28   3.45832  0.12724  3.50670  2.84731     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     29   3.45832  0.12724  3.50670  2.84731     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     30   3.11076  2.60922  3.15807  0.17515     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     31   2.96274  3.60992  0.11476  3.51690     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     32   3.11076  2.60922  3.15807  0.17515     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     33   3.45832  0.12724  3.50670  2.84731     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     34   3.45832  0.12724  3.50670  2.84731     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     35   2.96274  3.60992  0.11476  3.51690     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     36   0.13904  3.40215  2.81612  3.30590     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     37   2.96274  3.60992  0.11476  3.51690     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     38   2.96274  3.60992  0.11476  3.51690     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     39   2.96274  3.60992  0.11476  3.51690     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     40   3.11076  2.60922  3.15807  0.17515     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     41   3.45832  0.12724  3.50670  2.84731     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     42   2.96274  3.60992  0.11476  3.51690     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     43   2.96274  3.60992  0.11476  3.51690     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     44   3.45832  0.12724  3.50670  2.84731     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03642  4.02389  4.02389  1.46634  0.26236  1.09861  0.40547
     45   3.11076  2.60922  3.15807  0.17515     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01838  4.00585        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:11 2012
NSEQ  12
EFFN  3.336914
CKSUM 485870885
STATS LOCAL MSV       -8.2262  0.71933
STATS LOCAL VITERBI   -7.7462  0.71933
STATS LOCAL FORWARD   -4.1365  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.15126  1.17982  0.99685  1.57365
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
      1   2.95070  3.59237  0.11666  3.49752      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      2   3.43835  0.12958  3.48758  2.83281      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      3   2.95070  3.59237  0.11666  3.49752      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      4   2.95070  3.59237  0.11666  3.49752      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      5   3.43835  0.12958  3.48758  2.83281      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      6   3.43835  0.12958  3.48758  2.83281      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      7   0.14130  3.38481  2.80488  3.28690      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      8   3.43835  0.12958  3.48758  2.83281      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      9   2.95070  3.59237  0.11666  3.49752      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     10   2.95070  3.59237  0.11666  3.49752     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     11   2.95070  3.59237  0.11666  3.49752     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     12   3.09320  2.59806  3.14118  0.17794     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     13   1.88666  0.40908  2.54597  2.24656     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     14   1.88666  0.40908  2.54597  2.24656     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     15   2.95070  3.59237  0.11666  3.49752     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     16   3.43835  0.12958  3.48758  2.83281     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     17   3.43835  0.12958  3.48758  2.83281     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     18   3.43835  0.12958  3.48758  2.83281     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     19   2.95070  3.59237  0.11666  3.49752     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     20   3.09320  2.59806  3.14118  0.17794     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     21   2.95070  3.59237  0.11666  3.49752     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     22   2.95070  3.59237  0.11666  3.49752     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     23   3.43835  0.12958  3.48758  2.83281     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     24   3.09320  2.59806  3.14118  0.17794     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     25   0.14130  3.38481  2.80488  3.28690     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     26   3.43835  0.12958  3.48758  2.83281     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     27   2.00701  3.04952  0.26854  2.92367     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     28   3.09320  2.59806  3.14118  0.17794     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     29   3.43835  0.12958  3.48758  2.83281     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     30   3.09320  2.59806  3.14118  0.17794     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     31   2.95070  3.59237  0.11666  3.49752     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     32   3.09320  2.59806  3.14118  0.17794     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     33   3.43835  0.12958  3.48758  2.83281     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     34   3.43835  0.12958  3.48758  2.83281     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     35   2.95070  3.59237  0.11666  3.49752     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     36   0.14130  3.38481  2.80488  3.28690     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     37   2.95070  3.59237  0.11666  3.49752     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     38   2.95070  3.59237  0.11666  3.49752     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     39   2.95070  3.59237  0.11666  3.49752     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     40   3.09320  2.59806  3.14118  0.17794     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     41   3.43835  0.12958  3.48758  2.83281     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     42   2.95070  3.59237  0.11666  3.49752     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     43   2.95070  3.59237  0.11666  3.49752     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     44   3.09320  2.59806  3.14118  0.17794     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     45   3.09320  2.59806  3.14118  0.17794     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_oneg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:17 2012
NSEQ  2
EFFN  2.000000
CKSUM 2296771254
STATS LOCAL MSV       -7.5226  0.72702
STATS LOCAL VITERBI   -8.3896  0.72702
STATS LOCAL FORWARD   -3.3649  0.72702
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92402  1.20053  1.03636  1.61847
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.53331  3.02441  0.20344  2.88069     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_oneh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:22 2012
NSEQ  25
EFFN  3.195190
CKSUM 3061172173
STATS LOCAL MSV       -8.2269  0.71932
STATS LOCAL VITERBI   -7.7433  0.71932
STATS LOCAL FORWARD   -4.0483  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82111  1.32343  1.14287  1.37424
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  0.00000        *
      1   2.91821  3.54527  0.12192  3.44558      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      2   3.38500  0.13610  3.43647  2.79384      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      3   2.91821  3.54527  0.12192  3.44558      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      4   2.91821  3.54527  0.12192  3.44558      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      5   3.38500  0.13610  3.43647  2.79384      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      6   3.04671  2.56845  3.09646  0.18558      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      7   0.14753  3.33857  2.77475  3.23631      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      8   0.14753  3.33857  2.77475  3.23631      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
      9   2.91821  3.54527  0.12192  3.44558      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     10   2.91821  3.54527  0.12192  3.44558     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     11   2.91821  3.54527  0.12192  3.44558     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     12   3.38500  0.13610  3.43647  2.79384     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     13   3.04671  2.56845  3.09646  0.18558     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     14   3.04671  2.56845  3.09646  0.18558     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     15   2.91821  3.54527  0.12192  3.44558     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     16   3.38500  0.13610  3.43647  2.79384     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     17   3.04671  2.56845  3.09646  0.18558     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     18   3.38500  0.13610  3.43647  2.79384     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     19   3.04671  2.56845  3.09646  0.18558     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     20   3.04671  2.56845  3.09646  0.18558     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     21   0.14753  3.33857  2.77475  3.23631     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     22   2.91821  3.54527  0.12192  3.44558     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     23   3.38500  0.13610  3.43647  2.79384     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     24   3.38500  0.13610  3.43647  2.79384     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     25   0.14753  3.33857  2.77475  3.23631     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     26   3.38500  0.13610  3.43647  2.79384     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     27   2.91821  3.54527  0.12192  3.44558     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     28   3.04671  2.56845  3.09646  0.18558     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     29   3.04671  2.56845  3.09646  0.18558     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     30   3.38500  0.13610  3.43647  2.79384     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     31   2.91821  3.54527  0.12192  3.44558     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     32   0.14753  3.33857  2.77475  3.23631     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     33   3.04671  2.56845  3.09646  0.18558     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     34   3.38500  0.13610  3.43647  2.79384     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     35   2.91821  3.54527  0.12192  3.44558     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     36   0.14753  3.33857  2.77475  3.23631     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     37   2.91821  3.54527  0.12192  3.44558     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     38   3.04671  2.56845  3.09646  0.18558     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     39   2.91821  3.54527  0.12192  3.44558     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     40   3.04671  2.56845  3.09646  0.18558     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     41   3.38500  0.13610  3.43647  2.79384     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     42   2.91821  3.54527  0.12192  3.44558     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     43   2.91821  3.54527  0.12192  3.44558     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     44   3.38500  0.13610  3.43647  2.79384     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98809  3.98809  1.46634  0.26236  1.09861  0.40547
     45   3.04671  2.56845  3.09646  0.18558     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01907  3.96938        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:28 2012
NSEQ  4
EFFN  3.246094
CKSUM 767341417
STATS LOCAL MSV       -8.0857  0.71932
STATS LOCAL VITERBI   -7.7356  0.71932
STATS LOCAL FORWARD   -4.4479  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.19748  1.31361  1.14567  1.19714
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
      1   2.93012  3.56249  0.11996  3.46456      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      2   3.40447  0.13368  3.45513  2.80810      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      3   2.93012  3.56249  0.11996  3.46456      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      4   2.93012  3.56249  0.11996  3.46456      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      5   3.40447  0.13368  3.45513  2.80810      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      6   3.06361  2.57923  3.11272  0.18276      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      7   3.06361  2.57923  3.11272  0.18276      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      8   3.06361  2.57923  3.11272  0.18276      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      9   2.93012  3.56249  0.11996  3.46456      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     10   2.93012  3.56249  0.11996  3.46456     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     11   2.93012  3.56249  0.11996  3.46456     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     12   3.40447  0.13368  3.45513  2.80810     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     13   3.06361  2.57923  3.11272  0.18276     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     14   3.06361  2.57923  3.11272  0.18276     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     15   2.93012  3.56249  0.11996  3.46456     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     16   3.40447  0.13368  3.45513  2.80810     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     17   3.40447  0.13368  3.45513  2.80810     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     18   3.40447  0.13368  3.45513  2.80810     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     19   3.06361  2.57923  3.11272  0.18276     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     20   3.06361  2.57923  3.11272  0.18276     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     21   0.14522  3.35543  2.78576  3.25475     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     22   2.93012  3.56249  0.11996  3.46456     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     23   3.40447  0.13368  3.45513  2.80810     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     24   3.40447  0.13368  3.45513  2.80810     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     25   3.06361  2.57923  3.11272  0.18276     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     26   3.40447  0.13368  3.45513  2.80810     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     27   2.93012  3.56249  0.11996  3.46456     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     28   3.06361  2.57923  3.11272  0.18276     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     29   3.06361  2.57923  3.11272  0.18276     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     30   3.06361  2.57923  3.11272  0.18276     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     31   2.93012  3.56249  0.11996  3.46456     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     32   0.14522  3.35543  2.78576  3.25475     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     33   3.06361  2.57923  3.11272  0.18276     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     34   3.40447  0.13368  3.45513  2.80810     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     35   2.93012  3.56249  0.11996  3.46456     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     36   0.14522  3.35543  2.78576  3.25475     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     37   2.93012  3.56249  0.11996  3.46456     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     38   3.06361  2.57923  3.11272  0.18276     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     39   2.93012  3.56249  0.11996  3.46456     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     40   3.06361  2.57923  3.11272  0.18276     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     41   3.40447  0.13368  3.45513  2.80810     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     42   2.93012  3.56249  0.11996  3.46456     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     43   2.93012  3.56249  0.11996  3.46456     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     44   3.40447  0.13368  3.45513  2.80810     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     45   3.06361  2.57923  3.11272  0.18276     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:34 2012
NSEQ  23
EFFN  3.270874
CKSUM 1661500112
STATS LOCAL MSV       -8.0611  0.71932
STATS LOCAL VITERBI   -7.7573  0.71932
STATS LOCAL FORWARD   -4.3597  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05613  1.31125  1.14336  1.25941
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  0.00000        *
      1   2.93582  3.57075  0.11904  3.47366      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      2   3.41382  0.13253  3.46409  2.81493      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      3   2.93582  3.57075  0.11904  3.47366      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      4   2.93582  3.57075  0.11904  3.47366      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      5   3.41382  0.13253  3.46409  2.81493      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      6   3.07175  2.58441  3.12055  0.18142      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      7   3.07175  2.58441  3.12055  0.18142      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      8   3.07175  2.58441  3.12055  0.18142      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
      9   2.93582  3.57075  0.11904  3.47366      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     10   2.93582  3.57075  0.11904  3.47366     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     11   2.93582  3.57075  0.11904  3.47366     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     12   3.41382  0.13253  3.46409  2.81493     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     13   3.07175  2.58441  3.12055  0.18142     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     14   3.07175  2.58441  3.12055  0.18142     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     15   2.93582  3.57075  0.11904  3.47366     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     16   3.41382  0.13253  3.46409  2.81493     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     17   3.41382  0.13253  3.46409  2.81493     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     18   3.41382  0.13253  3.46409  2.81493     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     19   3.07175  2.58441  3.12055  0.18142     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     20   3.07175  2.58441  3.12055  0.18142     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     21   0.14412  3.36353  2.79104  3.26362     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     22   2.93582  3.57075  0.11904  3.47366     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     23   3.41382  0.13253  3.46409  2.81493     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     24   3.41382  0.13253  3.46409  2.81493     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     25   0.14412  3.36353  2.79104  3.26362     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     26   3.41382  0.13253  3.46409  2.81493     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     27   2.93582  3.57075  0.11904  3.47366     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     28   3.07175  2.58441  3.12055  0.18142     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     29   3.07175  2.58441  3.12055  0.18142     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     30   2.77009  1.93037  2.82972  0.31031     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     31   2.93582  3.57075  0.11904  3.47366     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     32   0.14412  3.36353  2.79104  3.26362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     33   3.07175  2.58441  3.12055  0.18142     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     34   3.41382  0.13253  3.46409  2.81493     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     35   2.93582  3.57075  0.11904  3.47366     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     36   0.14412  3.36353  2.79104  3.26362     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     37   2.93582  3.57075  0.11904  3.47366     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     38   3.07175  2.58441  3.12055  0.18142     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     39   2.93582  3.57075  0.11904  3.47366     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     40   3.07175  2.58441  3.12055  0.18142     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     41   3.41382  0.13253  3.46409  2.81493     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     42   2.93582  3.57075  0.11904  3.47366     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     43   2.93582  3.57075  0.11904  3.47366     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     44   3.41382  0.13253  3.46409  2.81493     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00202  4.00202  1.46634  0.26236  1.09861  0.40547
     45   3.07175  2.58441  3.12055  0.18142     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01879  3.98358        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_onek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:31:54 2012
NSEQ  3
EFFN  3.000000
CKSUM 427469681
STATS LOCAL MSV       -8.0634  0.72029
STATS LOCAL VITERBI   -7.6566  0.72029
STATS LOCAL FORWARD   -4.3376  0.72029
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.80677  1.45356  1.14412  1.26027
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   3.30705  0.14631  3.36166  2.73626     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.97980  2.52563  3.03204  0.19727     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   3.30705  0.14631  3.36166  2.73626     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_sevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:04 2012
NSEQ  18
EFFN  3.563965
CKSUM 1492424210
STATS LOCAL MSV       -7.2875  0.71932
STATS LOCAL VITERBI   -7.5847  0.71932
STATS LOCAL FORWARD   -3.8412  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.77673  1.34258  1.12915  1.40108
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  0.00000        *
      1   2.99862  3.66252  0.10930  3.57508      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      2   3.51842  0.12048  3.56419  2.89070      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      3   2.45587  0.80883  2.52786  0.94417      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      4   0.13247  3.45449  2.84993  3.36328      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      5   3.16417  2.64312  3.20941  0.16696      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      6   3.51842  0.12048  3.56419  2.89070      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      7   2.99862  3.66252  0.10930  3.57508      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      8   2.99862  3.66252  0.10930  3.57508      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      9   2.99862  3.66252  0.10930  3.57508      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     10   3.16417  2.64312  3.20941  0.16696     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     11   3.16417  2.64312  3.20941  0.16696     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     12   3.51842  0.12048  3.56419  2.89070     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     13   0.13247  3.45449  2.84993  3.36328     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     14   3.16417  2.64312  3.20941  0.16696     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     15   3.16417  2.64312  3.20941  0.16696     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     16   3.51842  0.12048  3.56419  2.89070     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     17   3.51842  0.12048  3.56419  2.89070     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     18   3.51842  0.12048  3.56419  2.89070     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     19   2.99862  3.66252  0.10930  3.57508     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     20   1.09883  1.59068  2.07002  1.08836     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     21   3.16417  2.64312  3.20941  0.16696     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     22   2.99862  3.66252  0.10930  3.57508     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     23   2.99862  3.66252  0.10930  3.57508     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     24   3.51842  0.12048  3.56419  2.89070     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     25   0.13247  3.45449  2.84993  3.36328     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     26   3.51842  0.12048  3.56419  2.89070     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     27   2.99862  3.66252  0.10930  3.57508     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     28   3.16417  2.64312  3.20941  0.16696     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     29   3.51842  0.12048  3.56419  2.89070     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     30   3.16417  2.64312  3.20941  0.16696     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     31   2.99862  3.66252  0.10930  3.57508     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     32   2.99862  3.66252  0.10930  3.57508     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     33   3.51842  0.12048  3.56419  2.89070     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     34   3.16417  2.64312  3.20941  0.16696     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     35   2.99862  3.66252  0.10930  3.57508     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     36   0.13247  3.45449  2.84993  3.36328     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     37   2.99862  3.66252  0.10930  3.57508     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     38   2.99862  3.66252  0.10930  3.57508     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     39   2.99862  3.66252  0.10930  3.57508     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     40   3.16417  2.64312  3.20941  0.16696     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     41   3.51842  0.12048  3.56419  2.89070     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     42   2.99862  3.66252  0.10930  3.57508     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     43   0.13247  3.45449  2.84993  3.36328     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     44   0.13247  3.45449  2.84993  3.36328     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     45   1.79664  2.31697  2.50966  0.42422     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01781  4.03671        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_sevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:10 2012
NSEQ  7
EFFN  3.496582
CKSUM 1558608
STATS LOCAL MSV       -7.3590  0.71933
STATS LOCAL VITERBI   -7.7029  0.71933
STATS LOCAL FORWARD   -4.0423  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58896  1.55480  1.18718  1.27457
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  0.00000        *
      1   0.13496  3.43436  2.83695  3.34119      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      2   3.49533  0.12303  3.54211  2.87408      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      3   3.49533  0.12303  3.54211  2.87408      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      4   0.13496  3.43436  2.83695  3.34119      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      5   3.14355  2.63004  3.18959  0.17007      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      6   2.60202  0.50178  2.67248  1.38094      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      7   2.98489  3.64235  0.11136  3.55276      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      8   2.98489  3.64235  0.11136  3.55276      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
      9   2.98489  3.64235  0.11136  3.55276      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     10   3.14355  2.63004  3.18959  0.17007     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     11   3.14355  2.63004  3.18959  0.17007     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     12   2.98489  3.64235  0.11136  3.55276     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     13   0.13496  3.43436  2.83695  3.34119     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     14   3.14355  2.63004  3.18959  0.17007     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     15   3.14355  2.63004  3.18959  0.17007     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     16   3.49533  0.12303  3.54211  2.87408     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     17   3.49533  0.12303  3.54211  2.87408     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     18   3.49533  0.12303  3.54211  2.87408     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     19   2.98489  3.64235  0.11136  3.55276     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     20   0.13496  3.43436  2.83695  3.34119     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     21   3.14355  2.63004  3.18959  0.17007     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     22   2.98489  3.64235  0.11136  3.55276     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     23   2.98489  3.64235  0.11136  3.55276     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     24   3.14355  2.63004  3.18959  0.17007     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     25   0.13496  3.43436  2.83695  3.34119     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     26   3.49533  0.12303  3.54211  2.87408     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     27   2.98489  3.64235  0.11136  3.55276     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     28   3.14355  2.63004  3.18959  0.17007     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     29   3.49533  0.12303  3.54211  2.87408     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     30   3.14355  2.63004  3.18959  0.17007     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     31   2.98489  3.64235  0.11136  3.55276     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     32   2.98489  3.64235  0.11136  3.55276     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     33   3.14355  2.63004  3.18959  0.17007     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     34   3.14355  2.63004  3.18959  0.17007     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     35   2.98489  3.64235  0.11136  3.55276     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     36   0.13496  3.43436  2.83695  3.34119     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     37   2.98489  3.64235  0.11136  3.55276     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     38   2.98489  3.64235  0.11136  3.55276     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     39   2.98489  3.64235  0.11136  3.55276     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     40   3.14355  2.63004  3.18959  0.17007     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     41   3.49533  0.12303  3.54211  2.87408     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     42   0.13496  3.43436  2.83695  3.34119     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     43   0.13496  3.43436  2.83695  3.34119     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     44   3.14355  2.63004  3.18959  0.17007     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03574  4.04245  4.04245  1.46634  0.26236  1.09861  0.40547
     45   0.84492  2.19039  2.18152  1.06229     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01803  4.02474        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_seventeena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:53 2012
NSEQ  5
EFFN  3.149414
CKSUM 613401642
STATS LOCAL MSV       -8.0549  0.71933
STATS LOCAL VITERBI   -7.6860  0.71933
STATS LOCAL FORWARD   -4.2074  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82217  1.20881  1.14629  1.50525
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  0.00000        *
      1   2.90726  3.52948  0.12374  3.42820      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      2   3.03132  2.55863  3.08165  0.18819      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      3   3.36719  0.13835  3.41939  2.78075      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      4   3.36719  0.13835  3.41939  2.78075      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      5   0.14968  3.32315  2.76467  3.21947      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      6   3.03132  2.55863  3.08165  0.18819      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      7   2.90726  3.52948  0.12374  3.42820      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      8   2.90726  3.52948  0.12374  3.42820      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      9   0.14968  3.32315  2.76467  3.21947      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     10   3.03132  2.55863  3.08165  0.18819     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     11   3.03132  2.55863  3.08165  0.18819     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     12   3.36719  0.13835  3.41939  2.78075     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     13   3.36719  0.13835  3.41939  2.78075     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     14   2.90726  3.52948  0.12374  3.42820     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     15   3.03132  2.55863  3.08165  0.18819     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     16   3.03132  2.55863  3.08165  0.18819     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     17   3.36719  0.13835  3.41939  2.78075     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     18   3.36719  0.13835  3.41939  2.78075     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     19   3.36719  0.13835  3.41939  2.78075     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     20   2.90726  3.52948  0.12374  3.42820     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     21   2.90726  3.52948  0.12374  3.42820     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     22   0.14968  3.32315  2.76467  3.21947     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     23   3.36719  0.13835  3.41939  2.78075     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     24   3.36719  0.13835  3.41939  2.78075     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     25   0.14968  3.32315  2.76467  3.21947     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     26   3.36719  0.13835  3.41939  2.78075     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     27   2.90726  3.52948  0.12374  3.42820     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     28   3.36719  0.13835  3.41939  2.78075     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     29   3.36719  0.13835  3.41939  2.78075     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     30   3.03132  2.55863  3.08165  0.18819     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     31   2.90726  3.52948  0.12374  3.42820     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     32   2.90726  3.52948  0.12374  3.42820     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     33   3.36719  0.13835  3.41939  2.78075     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     34   3.03132  2.55863  3.08165  0.18819     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     35   2.90726  3.52948  0.12374  3.42820     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     36   0.14968  3.32315  2.76467  3.21947     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     37   2.90726  3.52948  0.12374  3.42820     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     38   2.90726  3.52948  0.12374  3.42820     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     39   2.90726  3.52948  0.12374  3.42820     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     40   3.03132  2.55863  3.08165  0.18819     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     41   3.36719  0.13835  3.41939  2.78075     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     42   2.90726  3.52948  0.12374  3.42820     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     43   2.90726  3.52948  0.12374  3.42820     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     44   3.03132  2.55863  3.08165  0.18819     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     45   0.14968  3.32315  2.76467  3.21947     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01923  3.96070        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_seventeenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:39:00 2012
NSEQ  5
EFFN  3.159180
CKSUM 1305453752
STATS LOCAL MSV       -8.1369  0.71931
STATS LOCAL VITERBI   -7.7407  0.71931
STATS LOCAL FORWARD   -4.3131  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05240  1.20627  1.09569  1.43569
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  0.00000        *
      1   2.90962  3.53288  0.12335  3.43193      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      2   3.03462  2.56074  3.08483  0.18763      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      3   3.37101  0.13787  3.42306  2.78357      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      4   3.37101  0.13787  3.42306  2.78357      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      5   0.14921  3.32646  2.76683  3.22308      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      6   3.03462  2.56074  3.08483  0.18763      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      7   2.90962  3.53288  0.12335  3.43193      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      8   2.90962  3.53288  0.12335  3.43193      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
      9   0.14921  3.32646  2.76683  3.22308      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     10   3.03462  2.56074  3.08483  0.18763     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     11   3.03462  2.56074  3.08483  0.18763     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     12   3.37101  0.13787  3.42306  2.78357     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     13   3.37101  0.13787  3.42306  2.78357     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     14   2.90962  3.53288  0.12335  3.43193     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     15   3.03462  2.56074  3.08483  0.18763     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     16   3.03462  2.56074  3.08483  0.18763     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     17   3.37101  0.13787  3.42306  2.78357     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     18   3.37101  0.13787  3.42306  2.78357     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     19   3.37101  0.13787  3.42306  2.78357     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     20   2.90962  3.53288  0.12335  3.43193     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     21   2.90962  3.53288  0.12335  3.43193     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     22   2.90962  3.53288  0.12335  3.43193     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     23   3.37101  0.13787  3.42306  2.78357     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     24   3.37101  0.13787  3.42306  2.78357     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     25   0.14921  3.32646  2.76683  3.22308     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     26   3.37101  0.13787  3.42306  2.78357     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     27   2.90962  3.53288  0.12335  3.43193     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     28   3.03462  2.56074  3.08483  0.18763     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     29   3.37101  0.13787  3.42306  2.78357     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     30   3.03462  2.56074  3.08483  0.18763     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     31   2.90962  3.53288  0.12335  3.43193     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     32   2.90962  3.53288  0.12335  3.43193     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     33   3.37101  0.13787  3.42306  2.78357     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     34   3.03462  2.56074  3.08483  0.18763     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     35   2.90962  3.53288  0.12335  3.43193     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     36   0.14921  3.32646  2.76683  3.22308     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     37   2.90962  3.53288  0.12335  3.43193     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     38   2.90962  3.53288  0.12335  3.43193     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     39   2.90962  3.53288  0.12335  3.43193     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     40   3.03462  2.56074  3.08483  0.18763     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     41   3.37101  0.13787  3.42306  2.78357     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     42   2.90962  3.53288  0.12335  3.43193     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     43   2.90962  3.53288  0.12335  3.43193     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     44   3.37101  0.13787  3.42306  2.78357     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03803  3.98140  3.98140  1.46634  0.26236  1.09861  0.40547
     45   3.03462  2.56074  3.08483  0.18763     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01920  3.96256        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_seventeenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:39:08 2012
NSEQ  4
EFFN  3.292969
CKSUM 3685436907
STATS LOCAL MSV       -7.9887  0.71931
STATS LOCAL VITERBI   -7.7418  0.71931
STATS LOCAL FORWARD   -3.9482  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.80736  1.13130  1.19594  1.55647
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
      1   2.94085  3.57805  0.11823  3.48171      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      2   3.07897  2.58901  3.12749  0.18024      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      3   3.42209  0.13153  3.47201  2.82097      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      4   3.42209  0.13153  3.47201  2.82097      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      5   3.07897  2.58901  3.12749  0.18024      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      6   3.07897  2.58901  3.12749  0.18024      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      7   2.94085  3.57805  0.11823  3.48171      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      8   2.94085  3.57805  0.11823  3.48171      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      9   0.14316  3.37070  2.79571  3.27146      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     10   3.07897  2.58901  3.12749  0.18024     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     11   3.07897  2.58901  3.12749  0.18024     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     12   3.42209  0.13153  3.47201  2.82097     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     13   3.42209  0.13153  3.47201  2.82097     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     14   0.14316  3.37070  2.79571  3.27146     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     15   0.14316  3.37070  2.79571  3.27146     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     16   3.07897  2.58901  3.12749  0.18024     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     17   3.42209  0.13153  3.47201  2.82097     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     18   3.42209  0.13153  3.47201  2.82097     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     19   3.42209  0.13153  3.47201  2.82097     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     20   2.94085  3.57805  0.11823  3.48171     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     21   2.94085  3.57805  0.11823  3.48171     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     22   0.14316  3.37070  2.79571  3.27146     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     23   3.42209  0.13153  3.47201  2.82097     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     24   3.42209  0.13153  3.47201  2.82097     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     25   0.14316  3.37070  2.79571  3.27146     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     26   3.42209  0.13153  3.47201  2.82097     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     27   2.94085  3.57805  0.11823  3.48171     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     28   3.42209  0.13153  3.47201  2.82097     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     29   3.42209  0.13153  3.47201  2.82097     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     30   3.07897  2.58901  3.12749  0.18024     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     31   2.94085  3.57805  0.11823  3.48171     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     32   2.94085  3.57805  0.11823  3.48171     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     33   3.42209  0.13153  3.47201  2.82097     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     34   3.07897  2.58901  3.12749  0.18024     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     35   2.94085  3.57805  0.11823  3.48171     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     36   0.14316  3.37070  2.79571  3.27146     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     37   2.94085  3.57805  0.11823  3.48171     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     38   2.94085  3.57805  0.11823  3.48171     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     39   2.94085  3.57805  0.11823  3.48171     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     40   3.07897  2.58901  3.12749  0.18024     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     41   3.42209  0.13153  3.47201  2.82097     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     42   2.94085  3.57805  0.11823  3.48171     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     43   2.94085  3.57805  0.11823  3.48171     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     44   3.42209  0.13153  3.47201  2.82097     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     45   1.43147  1.00912  2.06421  1.31088     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_seventeend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:39:13 2012
NSEQ  23
EFFN  3.220337
CKSUM 3706857204
STATS LOCAL MSV       -8.1343  0.71932
STATS LOCAL VITERBI   -7.5910  0.71932
STATS LOCAL FORWARD   -4.0166  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.93028  1.09417  1.09232  1.68936
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  0.00000        *
      1   2.92413  3.55382  0.12094  3.45500      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      2   3.39466  0.13489  3.44573  2.80092      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      3   3.39466  0.13489  3.44573  2.80092      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      4   3.39466  0.13489  3.44573  2.80092      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      5   0.14638  3.34693  2.78022  3.24546      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      6   3.39466  0.13489  3.44573  2.80092      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      7   2.92413  3.55382  0.12094  3.45500      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      8   2.92413  3.55382  0.12094  3.45500      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
      9   0.14638  3.34693  2.78022  3.24546      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     10   3.05509  2.57380  3.10452  0.18418     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     11   3.05509  2.57380  3.10452  0.18418     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     12   3.39466  0.13489  3.44573  2.80092     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     13   3.05509  2.57380  3.10452  0.18418     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     14   2.92413  3.55382  0.12094  3.45500     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     15   2.43346  1.22010  2.50389  0.62493     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     16   3.05509  2.57380  3.10452  0.18418     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     17   3.39466  0.13489  3.44573  2.80092     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     18   3.39466  0.13489  3.44573  2.80092     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     19   3.39466  0.13489  3.44573  2.80092     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     20   2.92413  3.55382  0.12094  3.45500     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     21   2.92413  3.55382  0.12094  3.45500     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     22   2.92413  3.55382  0.12094  3.45500     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     23   3.04500  0.22727  3.10593  2.19896     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     24   3.05509  2.57380  3.10452  0.18418     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     25   0.14638  3.34693  2.78022  3.24546     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     26   3.39466  0.13489  3.44573  2.80092     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     27   2.92413  3.55382  0.12094  3.45500     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     28   3.39466  0.13489  3.44573  2.80092     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     29   3.39466  0.13489  3.44573  2.80092     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     30   3.05509  2.57380  3.10452  0.18418     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     31   2.92413  3.55382  0.12094  3.45500     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     32   2.92413  3.55382  0.12094  3.45500     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     33   3.39466  0.13489  3.44573  2.80092     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     34   3.05509  2.57380  3.10452  0.18418     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     35   2.92413  3.55382  0.12094  3.45500     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     36   0.14638  3.34693  2.78022  3.24546     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     37   2.92413  3.55382  0.12094  3.45500     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     38   2.92413  3.55382  0.12094  3.45500     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     39   2.92413  3.55382  0.12094  3.45500     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     40   3.39466  0.13489  3.44573  2.80092     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     41   3.39466  0.13489  3.44573  2.80092     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     42   2.92413  3.55382  0.12094  3.45500     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     43   2.92413  3.55382  0.12094  3.45500     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     44   3.39466  0.13489  3.44573  2.80092     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03760  3.99274  3.99274  1.46634  0.26236  1.09861  0.40547
     45   0.14638  3.34693  2.78022  3.24546     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97412        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:34:38 2012
NSEQ  7
EFFN  4.125488
CKSUM 1937543874
STATS LOCAL MSV       -6.8330  0.71932
STATS LOCAL VITERBI   -7.8147  0.71932
STATS LOCAL FORWARD   -4.0567  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.67777  1.45561  1.28397  1.19397
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  0.00000        *
      1   2.18378  0.82140  1.13155  2.07917      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      2   3.09938  3.81164  0.09533  3.74056      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      3   3.69079  0.10326  3.72867  3.01331      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      4   0.11535  3.60610  2.94734  3.52987      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      5   3.32274  2.74372  3.36174  0.14509      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      6   3.32274  2.74372  3.36174  0.14509      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      7   3.09938  3.81164  0.09533  3.74056      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      8   1.53355  2.90664  0.40474  2.77383      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
      9   3.09938  3.81164  0.09533  3.74056      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     10   3.09938  3.81164  0.09533  3.74056     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     11   3.32274  2.74372  3.36174  0.14509     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     12   3.69079  0.10326  3.72867  3.01331     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     13   0.11535  3.60610  2.94734  3.52987     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     14   0.11535  3.60610  2.94734  3.52987     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     15   0.11535  3.60610  2.94734  3.52987     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     16   3.69079  0.10326  3.72867  3.01331     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     17   2.72481  0.47283  2.79340  1.38632     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     18   3.69079  0.10326  3.72867  3.01331     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     19   3.32274  2.74372  3.36174  0.14509     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     20   3.32274  2.74372  3.36174  0.14509     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     21   3.32274  2.74372  3.36174  0.14509     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     22   3.09938  3.81164  0.09533  3.74056     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     23   2.18378  0.82140  1.13155  2.07917     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     24   1.32958  1.10724  2.12400  1.25389     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     25   0.11535  3.60610  2.94734  3.52987     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     26   3.69079  0.10326  3.72867  3.01331     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     27   3.09938  3.81164  0.09533  3.74056     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     28   3.32274  2.74372  3.36174  0.14509     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     29   3.69079  0.10326  3.72867  3.01331     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     30   3.32274  2.74372  3.36174  0.14509     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     31   3.09938  3.81164  0.09533  3.74056     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     32   3.09938  3.81164  0.09533  3.74056     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     33   3.32274  2.74372  3.36174  0.14509     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     34   3.32274  2.74372  3.36174  0.14509     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     35   3.69079  0.10326  3.72867  3.01331     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     36   0.11535  3.60610  2.94734  3.52987     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     37   3.09938  3.81164  0.09533  3.74056     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     38   3.09938  3.81164  0.09533  3.74056     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     39   3.09938  3.81164  0.09533  3.74056     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     40   3.32274  2.74372  3.36174  0.14509     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     41   3.69079  0.10326  3.72867  3.01331     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     42   0.11535  3.60610  2.94734  3.52987     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     43   3.32274  2.74372  3.36174  0.14509     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     44   3.32274  2.74372  3.36174  0.14509     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03213  4.14717  4.14717  1.46634  0.26236  1.09861  0.40547
     45   3.32274  2.74372  3.36174  0.14509     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01619  4.13124        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_sixteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:42 2012
NSEQ  4
EFFN  3.863281
CKSUM 3845133886
STATS LOCAL MSV       -7.4397  0.71932
STATS LOCAL VITERBI   -7.7016  0.71932
STATS LOCAL FORWARD   -4.3099  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45009  1.98350  1.27374  1.05532
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  0.00000        *
      1   0.92184  1.01208  2.20162  2.05472      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      2   3.25155  2.69851  3.29336  0.15449      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      3   3.25155  2.69851  3.29336  0.15449      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      4   3.05513  3.74598  0.10122  3.66762      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      5   0.95536  2.21103  2.22862  0.92115      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      6   3.25155  2.69851  3.29336  0.15449      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      7   3.25155  2.69851  3.29336  0.15449      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      8   3.25155  2.69851  3.29336  0.15449      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
      9   0.12263  3.53873  2.90407  3.45579      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     10   0.12263  3.53873  2.90407  3.45579     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     11   0.84088  2.60316  0.89347  2.46045     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     12   0.12263  3.53873  2.90407  3.45579     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     13   3.25155  2.69851  3.29336  0.15449     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     14   3.61457  0.11050  3.65599  2.95937     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     15   3.25155  2.69851  3.29336  0.15449     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     16   3.05513  3.74598  0.10122  3.66762     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     17   3.25155  2.69851  3.29336  0.15449     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     18   3.05513  3.74598  0.10122  3.66762     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     19   3.25155  2.69851  3.29336  0.15449     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     20   3.05513  3.74598  0.10122  3.66762     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     21   0.12263  3.53873  2.90407  3.45579     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     22   3.05513  3.74598  0.10122  3.66762     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     23   3.05513  3.74598  0.10122  3.66762     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     24   3.25155  2.69851  3.29336  0.15449     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     25   0.12263  3.53873  2.90407  3.45579     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     26   3.61457  0.11050  3.65599  2.95937     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     27   0.12263  3.53873  2.90407  3.45579     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     28   3.61457  0.11050  3.65599  2.95937     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     29   0.12263  3.53873  2.90407  3.45579     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     30   3.25155  2.69851  3.29336  0.15449     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     31   3.05513  3.74598  0.10122  3.66762     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     32   3.05513  3.74598  0.10122  3.66762     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     33   3.25155  2.69851  3.29336  0.15449     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     34   3.25155  2.69851  3.29336  0.15449     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     35   3.05513  3.74598  0.10122  3.66762     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     36   0.12263  3.53873  2.90407  3.45579     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     37   3.05513  3.74598  0.10122  3.66762     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     38   3.25155  2.69851  3.29336  0.15449     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     39   3.05513  3.74598  0.10122  3.66762     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     40   3.25155  2.69851  3.29336  0.15449     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     41   3.61457  0.11050  3.65599  2.95937     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     42   3.05513  3.74598  0.10122  3.66762     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     43   3.25155  2.69851  3.29336  0.15449     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     44   3.25155  2.69851  3.29336  0.15449     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03354  4.10484  4.10484  1.46634  0.26236  1.09861  0.40547
     45   0.12263  3.53873  2.90407  3.45579     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01691  4.08821        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:44 2012
NSEQ  4
EFFN  3.347656
CKSUM 1138680412
STATS LOCAL MSV       -8.0225  0.71931
STATS LOCAL VITERBI   -7.7367  0.71931
STATS LOCAL FORWARD   -4.2215  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54341  1.78944  1.25102  1.09936
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  0.00000        *
      1   0.14085  3.38823  2.80709  3.29064      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      2   3.44228  0.12912  3.49135  2.83567      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      3   3.44228  0.12912  3.49135  2.83567      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      4   0.14085  3.38823  2.80709  3.29064      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      5   0.14085  3.38823  2.80709  3.29064      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      6   3.44228  0.12912  3.49135  2.83567      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      7   0.14085  3.38823  2.80709  3.29064      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      8   2.95307  3.59583  0.11628  3.50134      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
      9   2.95307  3.59583  0.11628  3.50134      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     10   3.09665  2.60026  3.14450  0.17739     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     11   3.09665  2.60026  3.14450  0.17739     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     12   3.44228  0.12912  3.49135  2.83567     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     13   0.14085  3.38823  2.80709  3.29064     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     14   3.09665  2.60026  3.14450  0.17739     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     15   0.14085  3.38823  2.80709  3.29064     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     16   3.09665  2.60026  3.14450  0.17739     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     17   3.44228  0.12912  3.49135  2.83567     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     18   3.09665  2.60026  3.14450  0.17739     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     19   2.95307  3.59583  0.11628  3.50134     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     20   3.09665  2.60026  3.14450  0.17739     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     21   3.09665  2.60026  3.14450  0.17739     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     22   2.95307  3.59583  0.11628  3.50134     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     23   2.95307  3.59583  0.11628  3.50134     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     24   3.09665  2.60026  3.14450  0.17739     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     25   0.14085  3.38823  2.80709  3.29064     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     26   3.09665  2.60026  3.14450  0.17739     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     27   2.95307  3.59583  0.11628  3.50134     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     28   3.09665  2.60026  3.14450  0.17739     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     29   3.09665  2.60026  3.14450  0.17739     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     30   3.09665  2.60026  3.14450  0.17739     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     31   2.95307  3.59583  0.11628  3.50134     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     32   2.95307  3.59583  0.11628  3.50134     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     33   3.09665  2.60026  3.14450  0.17739     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     34   3.09665  2.60026  3.14450  0.17739     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     35   2.95307  3.59583  0.11628  3.50134     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     36   0.14085  3.38823  2.80709  3.29064     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     37   2.95307  3.59583  0.11628  3.50134     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     38   2.95307  3.59583  0.11628  3.50134     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     39   2.95307  3.59583  0.11628  3.50134     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     40   3.09665  2.60026  3.14450  0.17739     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     41   3.44228  0.12912  3.49135  2.83567     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     42   2.95307  3.59583  0.11628  3.50134     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     43   0.14085  3.38823  2.80709  3.29064     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     44   3.09665  2.60026  3.14450  0.17739     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03672  4.01596  4.01596  1.46634  0.26236  1.09861  0.40547
     45   3.09665  2.60026  3.14450  0.17739     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01853  3.99777        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:50 2012
NSEQ  15
EFFN  3.541260
CKSUM 743970875
STATS LOCAL MSV       -7.2652  0.71932
STATS LOCAL VITERBI   -7.7504  0.71932
STATS LOCAL FORWARD   -4.0818  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47399  1.99837  1.30389  1.01071
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  0.00000        *
      1   0.13330  3.44776  2.84559  3.35589      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      2   3.51070  0.12132  3.55681  2.88515      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      3   3.15726  2.63874  3.20277  0.16800      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      4   0.13330  3.44776  2.84559  3.35589      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      5   3.15726  2.63874  3.20277  0.16800      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      6   3.51070  0.12132  3.55681  2.88515      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      7   0.25186  3.06981  2.08699  2.95350      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      8   2.99404  3.65578  0.10998  3.56762      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
      9   2.99404  3.65578  0.10998  3.56762      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     10   3.15726  2.63874  3.20277  0.16800     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     11   3.15726  2.63874  3.20277  0.16800     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     12   3.15726  2.63874  3.20277  0.16800     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     13   0.13330  3.44776  2.84559  3.35589     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     14   3.15726  2.63874  3.20277  0.16800     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     15   0.13330  3.44776  2.84559  3.35589     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     16   3.15726  2.63874  3.20277  0.16800     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     17   3.51070  0.12132  3.55681  2.88515     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     18   3.15726  2.63874  3.20277  0.16800     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     19   2.99404  3.65578  0.10998  3.56762     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     20   0.13330  3.44776  2.84559  3.35589     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     21   3.15726  2.63874  3.20277  0.16800     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     22   0.13330  3.44776  2.84559  3.35589     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     23   2.99404  3.65578  0.10998  3.56762     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     24   3.15726  2.63874  3.20277  0.16800     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     25   0.13330  3.44776  2.84559  3.35589     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     26   3.15726  2.63874  3.20277  0.16800     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     27   2.99404  3.65578  0.10998  3.56762     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     28   3.15726  2.63874  3.20277  0.16800     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     29   3.15726  2.63874  3.20277  0.16800     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     30   3.15726  2.63874  3.20277  0.16800     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     31   2.99404  3.65578  0.10998  3.56762     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     32   2.99404  3.65578  0.10998  3.56762     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     33   3.15726  2.63874  3.20277  0.16800     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     34   3.15726  2.63874  3.20277  0.16800     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     35   2.99404  3.65578  0.10998  3.56762     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     36   0.13330  3.44776  2.84559  3.35589     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     37   2.99404  3.65578  0.10998  3.56762     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     38   2.99404  3.65578  0.10998  3.56762     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     39   2.99404  3.65578  0.10998  3.56762     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     40   3.15726  2.63874  3.20277  0.16800     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     41   3.51070  0.12132  3.55681  2.88515     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     42   2.99404  3.65578  0.10998  3.56762     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     43   0.13330  3.44776  2.84559  3.35589     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     44   2.63026  1.53163  2.69540  0.43968     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03546  4.05026  4.05026  1.46634  0.26236  1.09861  0.40547
     45   3.15726  2.63874  3.20277  0.16800     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01789  4.03269        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:35:57 2012
NSEQ  27
EFFN  3.477173
CKSUM 145315044
STATS LOCAL MSV       -7.2100  0.71931
STATS LOCAL VITERBI   -7.8054  0.71931
STATS LOCAL FORWARD   -4.0473  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.53836  2.01048  1.31044  0.96328
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  0.00000        *
      1   0.13569  3.42847  2.83315  3.33474      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      2   3.48857  0.12378  3.53565  2.86920      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      3   3.13754  2.62622  3.18381  0.17099      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      4   0.13569  3.42847  2.83315  3.33474      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      5   2.27052  2.44039  2.75948  0.29264      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      6   3.48857  0.12378  3.53565  2.86920      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      7   0.13569  3.42847  2.83315  3.33474      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      8   2.98086  3.63644  0.11197  3.54622      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
      9   2.98086  3.63644  0.11197  3.54622      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     10   3.13754  2.62622  3.18381  0.17099     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     11   3.13754  2.62622  3.18381  0.17099     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     12   3.13754  2.62622  3.18381  0.17099     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     13   0.13569  3.42847  2.83315  3.33474     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     14   3.13754  2.62622  3.18381  0.17099     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     15   0.13569  3.42847  2.83315  3.33474     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     16   3.13754  2.62622  3.18381  0.17099     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     17   3.48857  0.12378  3.53565  2.86920     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     18   3.13754  2.62622  3.18381  0.17099     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     19   2.98086  3.63644  0.11197  3.54622     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     20   3.13754  2.62622  3.18381  0.17099     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     21   3.13754  2.62622  3.18381  0.17099     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     22   0.13569  3.42847  2.83315  3.33474     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     23   2.98086  3.63644  0.11197  3.54622     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     24   3.13754  2.62622  3.18381  0.17099     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     25   0.13569  3.42847  2.83315  3.33474     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     26   3.13754  2.62622  3.18381  0.17099     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     27   2.98086  3.63644  0.11197  3.54622     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     28   3.13754  2.62622  3.18381  0.17099     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     29   3.13754  2.62622  3.18381  0.17099     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     30   3.13754  2.62622  3.18381  0.17099     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     31   2.98086  3.63644  0.11197  3.54622     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     32   2.98086  3.63644  0.11197  3.54622     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     33   3.13754  2.62622  3.18381  0.17099     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     34   3.13754  2.62622  3.18381  0.17099     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     35   2.98086  3.63644  0.11197  3.54622     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     36   0.13569  3.42847  2.83315  3.33474     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     37   2.98086  3.63644  0.11197  3.54622     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     38   2.98086  3.63644  0.11197  3.54622     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     39   2.98086  3.63644  0.11197  3.54622     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     40   3.13754  2.62622  3.18381  0.17099     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     41   3.48857  0.12378  3.53565  2.86920     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     42   2.98086  3.63644  0.11197  3.54622     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     43   0.13569  3.42847  2.83315  3.33474     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     44   3.13754  2.62622  3.18381  0.17099     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03904  4.03904  1.46634  0.26236  1.09861  0.40547
     45   3.13754  2.62622  3.18381  0.17099     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01809  4.02127        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:03 2012
NSEQ  4
EFFN  3.707031
CKSUM 223107628
STATS LOCAL MSV       -7.3709  0.71933
STATS LOCAL VITERBI   -7.6109  0.71933
STATS LOCAL FORWARD   -4.0357  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32217  2.06016  1.44176  0.99561
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  0.00000        *
      1   0.12754  3.49579  2.87650  3.40860      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      2   3.56566  0.11545  3.60931  2.92454      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      3   3.20678  2.67013  3.25036  0.16074      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      4   0.12754  3.49579  2.87650  3.40860      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      5   0.12754  3.49579  2.87650  3.40860      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      6   3.56566  0.11545  3.60931  2.92454      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      7   0.12754  3.49579  2.87650  3.40860      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      8   3.02650  3.70362  0.10523  3.62062      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
      9   3.02650  3.70362  0.10523  3.62062      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     10   3.20678  2.67013  3.25036  0.16074     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     11   3.20678  2.67013  3.25036  0.16074     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     12   3.20678  2.67013  3.25036  0.16074     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     13   0.12754  3.49579  2.87650  3.40860     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     14   3.20678  2.67013  3.25036  0.16074     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     15   0.12754  3.49579  2.87650  3.40860     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     16   3.20678  2.67013  3.25036  0.16074     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     17   3.56566  0.11545  3.60931  2.92454     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     18   3.20678  2.67013  3.25036  0.16074     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     19   3.02650  3.70362  0.10523  3.62062     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     20   3.20678  2.67013  3.25036  0.16074     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     21   3.20678  2.67013  3.25036  0.16074     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     22   0.12754  3.49579  2.87650  3.40860     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     23   3.02650  3.70362  0.10523  3.62062     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     24   3.20678  2.67013  3.25036  0.16074     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     25   0.12754  3.49579  2.87650  3.40860     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     26   2.47317  0.94581  2.54437  0.80119     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     27   3.02650  3.70362  0.10523  3.62062     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     28   3.20678  2.67013  3.25036  0.16074     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     29   3.20678  2.67013  3.25036  0.16074     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     30   3.20678  2.67013  3.25036  0.16074     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     31   0.12754  3.49579  2.87650  3.40860     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     32   0.12754  3.49579  2.87650  3.40860     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     33   3.20678  2.67013  3.25036  0.16074     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     34   3.20678  2.67013  3.25036  0.16074     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     35   3.02650  3.70362  0.10523  3.62062     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     36   0.12754  3.49579  2.87650  3.40860     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     37   3.02650  3.70362  0.10523  3.62062     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     38   3.02650  3.70362  0.10523  3.62062     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     39   3.02650  3.70362  0.10523  3.62062     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     40   3.20678  2.67013  3.25036  0.16074     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     41   2.47317  0.94581  2.54437  0.80119     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     42   3.02650  3.70362  0.10523  3.62062     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     43   0.12754  3.49579  2.87650  3.40860     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     44   3.20678  2.67013  3.25036  0.16074     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03444  4.07873  4.07873  1.46634  0.26236  1.09861  0.40547
     45   3.20678  2.67013  3.25036  0.16074     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01737  4.06165        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:09 2012
NSEQ  5
EFFN  3.735352
CKSUM 1997058217
STATS LOCAL MSV       -7.2306  0.71932
STATS LOCAL VITERBI   -7.6111  0.71932
STATS LOCAL FORWARD   -4.0332  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49987  1.83225  1.50630  0.92873
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  0.00000        *
      1   0.12662  3.50373  2.88160  3.41733      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      2   3.57473  0.11452  3.61797  2.93101      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      3   3.21503  2.67536  3.25828  0.15957      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      4   0.61319  2.63365  1.19099  2.49325      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      5   0.12662  3.50373  2.88160  3.41733      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      6   3.57473  0.11452  3.61797  2.93101      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      7   0.12662  3.50373  2.88160  3.41733      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      8   3.03183  3.71149  0.10447  3.62935      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
      9   3.03183  3.71149  0.10447  3.62935      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     10   3.21503  2.67536  3.25828  0.15957     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     11   3.21503  2.67536  3.25828  0.15957     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     12   3.21503  2.67536  3.25828  0.15957     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     13   2.50744  0.71426  2.57900  1.04094     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     14   3.21503  2.67536  3.25828  0.15957     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     15   0.12662  3.50373  2.88160  3.41733     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     16   3.21503  2.67536  3.25828  0.15957     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     17   3.57473  0.11452  3.61797  2.93101     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     18   3.21503  2.67536  3.25828  0.15957     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     19   3.03183  3.71149  0.10447  3.62935     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     20   3.21503  2.67536  3.25828  0.15957     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     21   3.21503  2.67536  3.25828  0.15957     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     22   0.12662  3.50373  2.88160  3.41733     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     23   3.03183  3.71149  0.10447  3.62935     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     24   3.21503  2.67536  3.25828  0.15957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     25   0.12662  3.50373  2.88160  3.41733     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     26   3.21503  2.67536  3.25828  0.15957     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     27   3.03183  3.71149  0.10447  3.62935     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     28   3.21503  2.67536  3.25828  0.15957     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     29   3.21503  2.67536  3.25828  0.15957     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     30   3.57473  0.11452  3.61797  2.93101     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     31   0.12662  3.50373  2.88160  3.41733     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     32   0.12662  3.50373  2.88160  3.41733     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     33   3.21503  2.67536  3.25828  0.15957     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     34   3.21503  2.67536  3.25828  0.15957     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     35   3.03183  3.71149  0.10447  3.62935     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     36   0.12662  3.50373  2.88160  3.41733     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     37   3.03183  3.71149  0.10447  3.62935     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     38   3.03183  3.71149  0.10447  3.62935     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     39   3.03183  3.71149  0.10447  3.62935     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     40   3.21503  2.67536  3.25828  0.15957     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     41   3.57473  0.11452  3.61797  2.93101     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     42   3.21503  2.67536  3.25828  0.15957     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     43   3.21503  2.67536  3.25828  0.15957     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     44   3.21503  2.67536  3.25828  0.15957     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03428  4.08351  4.08351  1.46634  0.26236  1.09861  0.40547
     45   3.21503  2.67536  3.25828  0.15957     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01729  4.06652        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_tenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:14 2012
NSEQ  9
EFFN  3.388184
CKSUM 3584086150
STATS LOCAL MSV       -7.3202  0.71932
STATS LOCAL VITERBI   -7.7155  0.71932
STATS LOCAL FORWARD   -3.9805  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47116  1.78523  1.37718  1.04898
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  0.00000        *
      1   2.96194  3.60876  0.11489  3.51562      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      2   3.45700  0.12739  3.50544  2.84636      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      3   0.13919  3.40101  2.81538  3.30464      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      4   3.45700  0.12739  3.50544  2.84636      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      5   3.10960  2.60848  3.15695  0.17533      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      6   0.13919  3.40101  2.81538  3.30464      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      7   0.13919  3.40101  2.81538  3.30464      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      8   3.45700  0.12739  3.50544  2.84636      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
      9   0.13919  3.40101  2.81538  3.30464      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     10   2.96194  3.60876  0.11489  3.51562     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     11   2.96194  3.60876  0.11489  3.51562     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     12   2.96194  3.60876  0.11489  3.51562     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     13   3.10960  2.60848  3.15695  0.17533     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     14   3.10960  2.60848  3.15695  0.17533     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     15   0.13919  3.40101  2.81538  3.30464     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     16   3.10960  2.60848  3.15695  0.17533     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     17   3.45700  0.12739  3.50544  2.84636     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     18   3.10960  2.60848  3.15695  0.17533     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     19   2.96194  3.60876  0.11489  3.51562     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     20   3.10960  2.60848  3.15695  0.17533     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     21   3.10960  2.60848  3.15695  0.17533     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     22   0.13919  3.40101  2.81538  3.30464     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     23   2.96194  3.60876  0.11489  3.51562     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     24   3.10960  2.60848  3.15695  0.17533     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     25   0.13919  3.40101  2.81538  3.30464     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     26   3.10960  2.60848  3.15695  0.17533     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     27   2.96194  3.60876  0.11489  3.51562     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     28   3.10960  2.60848  3.15695  0.17533     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     29   3.10960  2.60848  3.15695  0.17533     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     30   3.45700  0.12739  3.50544  2.84636     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     31   0.13919  3.40101  2.81538  3.30464     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     32   0.13919  3.40101  2.81538  3.30464     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     33   3.10960  2.60848  3.15695  0.17533     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     34   3.10960  2.60848  3.15695  0.17533     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     35   2.96194  3.60876  0.11489  3.51562     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     36   0.13919  3.40101  2.81538  3.30464     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     37   2.96194  3.60876  0.11489  3.51562     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     38   2.96194  3.60876  0.11489  3.51562     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     39   2.96194  3.60876  0.11489  3.51562     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     40   3.10960  2.60848  3.15695  0.17533     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     41   3.45700  0.12739  3.50544  2.84636     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     42   3.10960  2.60848  3.15695  0.17533     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     43   3.10960  2.60848  3.15695  0.17533     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     44   3.10960  2.60848  3.15695  0.17533     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03645  4.02324  4.02324  1.46634  0.26236  1.09861  0.40547
     45   3.10960  2.60848  3.15695  0.17533     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00518        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_teng_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:36:22 2012
NSEQ  2
EFFN  2.000000
CKSUM 3663368387
STATS LOCAL MSV       -7.3488  0.72876
STATS LOCAL VITERBI   -8.2888  0.72876
STATS LOCAL FORWARD   -3.6395  0.72876
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38983  1.64273  1.43124  1.14439
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.81865  0.23582  2.88868  2.35662     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:02 2012
NSEQ  3
EFFN  3.000000
CKSUM 2336979512
STATS LOCAL MSV       -7.9801  0.72066
STATS LOCAL VITERBI   -7.8245  0.72066
STATS LOCAL FORWARD   -3.9046  0.72066
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32957  2.00957  1.24643  1.15889
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.97980  2.52563  3.03204  0.19727     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:38:12 2012
NSEQ  3
EFFN  3.000000
CKSUM 2866047971
STATS LOCAL MSV       -8.0194  0.72073
STATS LOCAL VITERBI   -7.8566  0.72073
STATS LOCAL FORWARD   -3.9487  0.72073
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39363  2.00317  1.24770  1.10940
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.97980  2.52563  3.03204  0.19727     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:16 2012
NSEQ  7
EFFN  3.277832
CKSUM 3385757595
STATS LOCAL MSV       -8.0891  0.71932
STATS LOCAL VITERBI   -7.6678  0.71932
STATS LOCAL FORWARD   -3.7375  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72215  1.52760  1.19403  1.19976
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  0.00000        *
      1   2.93741  3.57306  0.11878  3.47620      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      2   2.93741  3.57306  0.11878  3.47620      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      3   3.41643  0.13221  3.46659  2.81684      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      4   3.07403  2.58586  3.12274  0.18104      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      5   3.07403  2.58586  3.12274  0.18104      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      6   3.07403  2.58586  3.12274  0.18104      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      7   3.41643  0.13221  3.46659  2.81684      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      8   2.93741  3.57306  0.11878  3.47620      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
      9   2.93741  3.57306  0.11878  3.47620      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     10   2.93741  3.57306  0.11878  3.47620     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     11   3.07403  2.58586  3.12274  0.18104     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     12   3.41643  0.13221  3.46659  2.81684     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     13   3.07403  2.58586  3.12274  0.18104     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     14   3.07403  2.58586  3.12274  0.18104     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     15   3.07403  2.58586  3.12274  0.18104     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     16   3.07403  2.58586  3.12274  0.18104     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     17   3.41643  0.13221  3.46659  2.81684     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     18   3.41643  0.13221  3.46659  2.81684     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     19   2.93741  3.57306  0.11878  3.47620     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     20   0.14382  3.36580  2.79252  3.26609     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     21   2.93741  3.57306  0.11878  3.47620     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     22   2.93741  3.57306  0.11878  3.47620     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     23   3.07403  2.58586  3.12274  0.18104     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     24   3.41643  0.13221  3.46659  2.81684     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     25   0.14382  3.36580  2.79252  3.26609     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     26   3.41643  0.13221  3.46659  2.81684     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     27   0.14382  3.36580  2.79252  3.26609     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     28   3.07403  2.58586  3.12274  0.18104     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     29   3.41643  0.13221  3.46659  2.81684     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     30   3.07403  2.58586  3.12274  0.18104     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     31   2.93741  3.57306  0.11878  3.47620     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     32   3.07403  2.58586  3.12274  0.18104     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     33   3.41643  0.13221  3.46659  2.81684     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     34   3.07403  2.58586  3.12274  0.18104     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     35   2.93741  3.57306  0.11878  3.47620     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     36   0.14382  3.36580  2.79252  3.26609     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     37   2.93741  3.57306  0.11878  3.47620     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     38   0.14382  3.36580  2.79252  3.26609     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     39   2.93741  3.57306  0.11878  3.47620     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     40   3.07403  2.58586  3.12274  0.18104     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     41   3.07403  2.58586  3.12274  0.18104     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     42   2.93741  3.57306  0.11878  3.47620     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     43   0.14382  3.36580  2.79252  3.26609     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     44   2.93741  3.57306  0.11878  3.47620     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00329  4.00329  1.46634  0.26236  1.09861  0.40547
     45   0.14382  3.36580  2.79252  3.26609     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98487        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:30 2012
NSEQ  3
EFFN  3.000000
CKSUM 3283497841
STATS LOCAL MSV       -8.1429  0.72002
STATS LOCAL VITERBI   -7.6801  0.72002
STATS LOCAL FORWARD   -4.0384  0.72002
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72213  1.15515  1.25962  1.50263
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   3.30705  0.14631  3.36166  2.73626     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   0.15719  3.27118  2.73043  3.16274     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   3.30705  0.14631  3.36166  2.73626     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:02 2012
NSEQ  6
EFFN  3.606445
CKSUM 1494175732
STATS LOCAL MSV       -7.4761  0.71932
STATS LOCAL VITERBI   -7.7902  0.71932
STATS LOCAL FORWARD   -4.1870  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.89462  1.54545  1.24685  1.05268
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  0.00000        *
      1   3.00708  3.67496  0.10805  3.58886      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      2   3.53270  0.11893  3.57783  2.90095      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      3   3.00708  3.67496  0.10805  3.58886      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      4   3.53270  0.11893  3.57783  2.90095      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      5   3.17699  2.65124  3.22173  0.16506      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      6   3.00708  3.67496  0.10805  3.58886      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      7   3.17699  2.65124  3.22173  0.16506      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      8   3.17699  2.65124  3.22173  0.16506      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
      9   0.13096  3.46696  2.85796  3.37696      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     10   3.00708  3.67496  0.10805  3.58886     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     11   3.00708  3.67496  0.10805  3.58886     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     12   0.95902  2.17958  2.19512  0.93573     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     13   3.17699  2.65124  3.22173  0.16506     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     14   3.17699  2.65124  3.22173  0.16506     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     15   3.17699  2.65124  3.22173  0.16506     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     16   3.53270  0.11893  3.57783  2.90095     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     17   2.55182  0.58439  2.62299  1.23090     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     18   3.17699  2.65124  3.22173  0.16506     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     19   0.13096  3.46696  2.85796  3.37696     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     20   3.00708  3.67496  0.10805  3.58886     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     21   3.53270  0.11893  3.57783  2.90095     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     22   0.13096  3.46696  2.85796  3.37696     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     23   3.00708  3.67496  0.10805  3.58886     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     24   3.53270  0.11893  3.57783  2.90095     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     25   0.13096  3.46696  2.85796  3.37696     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     26   3.17699  2.65124  3.22173  0.16506     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     27   3.00708  3.67496  0.10805  3.58886     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     28   3.17699  2.65124  3.22173  0.16506     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     29   3.53270  0.11893  3.57783  2.90095     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     30   3.17699  2.65124  3.22173  0.16506     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     31   3.00708  3.67496  0.10805  3.58886     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     32   3.17699  2.65124  3.22173  0.16506     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     33   3.53270  0.11893  3.57783  2.90095     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     34   3.17699  2.65124  3.22173  0.16506     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     35   3.00708  3.67496  0.10805  3.58886     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     36   0.13096  3.46696  2.85796  3.37696     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     37   3.00708  3.67496  0.10805  3.58886     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     38   3.17699  2.65124  3.22173  0.16506     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     39   3.00708  3.67496  0.10805  3.58886     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     40   3.17699  2.65124  3.22173  0.16506     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     41   3.53270  0.11893  3.57783  2.90095     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     42   3.00708  3.67496  0.10805  3.58886     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     43   3.17699  2.65124  3.22173  0.16506     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     44   3.17699  2.65124  3.22173  0.16506     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03505  4.06155  4.06155  1.46634  0.26236  1.09861  0.40547
     45   3.17699  2.65124  3.22173  0.16506     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01768  4.04418        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:54 2012
NSEQ  2
EFFN  2.000000
CKSUM 1862354267
STATS LOCAL MSV       -7.4990  0.72818
STATS LOCAL VITERBI   -8.2013  0.72818
STATS LOCAL FORWARD   -3.6550  0.72818
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.82028  1.51089  1.16534  1.18585
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyninea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:41 2012
NSEQ  12
EFFN  3.436523
CKSUM 1305076398
STATS LOCAL MSV       -7.4447  0.71933
STATS LOCAL VITERBI   -7.6590  0.71933
STATS LOCAL FORWARD   -4.0283  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.90049  1.11875  1.13599  1.59597
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  0.00000        *
      1   2.97231  3.62392  0.11328  3.53237      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      2   3.47427  0.12540  3.52197  2.85887      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      3   2.97231  3.62392  0.11328  3.53237      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      4   3.47427  0.12540  3.52197  2.85887      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      5   3.12486  2.61817  3.17162  0.17294      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      6   3.47427  0.12540  3.52197  2.85887      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      7   2.97231  3.62392  0.11328  3.53237      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      8   3.12486  2.61817  3.17162  0.17294      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
      9   3.47427  0.12540  3.52197  2.85887      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     10   3.12486  2.61817  3.17162  0.17294     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     11   3.47427  0.12540  3.52197  2.85887     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     12   3.12486  2.61817  3.17162  0.17294     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     13   2.45737  1.15240  2.52778  0.65657     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     14   2.97231  3.62392  0.11328  3.53237     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     15   3.47427  0.12540  3.52197  2.85887     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     16   2.97231  3.62392  0.11328  3.53237     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     17   0.13726  3.41603  2.82510  3.32110     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     18   2.97231  3.62392  0.11328  3.53237     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     19   2.97231  3.62392  0.11328  3.53237     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     20   3.47427  0.12540  3.52197  2.85887     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     21   2.97231  3.62392  0.11328  3.53237     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     22   0.13726  3.41603  2.82510  3.32110     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     23   2.97231  3.62392  0.11328  3.53237     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     24   3.47427  0.12540  3.52197  2.85887     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     25   0.13726  3.41603  2.82510  3.32110     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     26   0.13726  3.41603  2.82510  3.32110     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     27   2.97231  3.62392  0.11328  3.53237     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     28   2.97231  3.62392  0.11328  3.53237     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     29   3.47427  0.12540  3.52197  2.85887     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     30   3.12486  2.61817  3.17162  0.17294     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     31   2.97231  3.62392  0.11328  3.53237     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     32   3.12486  2.61817  3.17162  0.17294     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     33   3.47427  0.12540  3.52197  2.85887     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     34   3.47427  0.12540  3.52197  2.85887     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     35   2.97231  3.62392  0.11328  3.53237     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     36   0.13726  3.41603  2.82510  3.32110     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     37   2.97231  3.62392  0.11328  3.53237     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     38   3.47427  0.12540  3.52197  2.85887     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     39   2.97231  3.62392  0.11328  3.53237     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     40   3.12486  2.61817  3.17162  0.17294     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     41   3.47427  0.12540  3.52197  2.85887     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     42   3.47427  0.12540  3.52197  2.85887     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     43   1.11860  0.85853  2.17412  1.99678     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     44   3.12486  2.61817  3.17162  0.17294     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03613  4.03185  4.03185  1.46634  0.26236  1.09861  0.40547
     45   2.86793  0.31108  2.93325  1.84958     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01823  4.01395        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtynineb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:48 2012
NSEQ  4
EFFN  3.113281
CKSUM 2440900297
STATS LOCAL MSV       -7.9878  0.71931
STATS LOCAL VITERBI   -7.8835  0.71931
STATS LOCAL FORWARD   -3.7817  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92771  1.21126  1.04606  1.58291
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  0.00000        *
      1   3.35293  0.14020  3.40571  2.77025      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      2   2.89845  3.51682  0.12523  3.41426      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      3   3.35293  0.14020  3.40571  2.77025      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      4   3.01905  2.55078  3.06983  0.19031      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      5   3.35293  0.14020  3.40571  2.77025      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      6   2.89845  3.51682  0.12523  3.41426      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      7   3.01905  2.55078  3.06983  0.19031      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      8   3.35293  0.14020  3.40571  2.77025      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
      9   2.89845  3.51682  0.12523  3.41426      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     10   3.35293  0.14020  3.40571  2.77025     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     11   3.01905  2.55078  3.06983  0.19031     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     12   3.01905  2.55078  3.06983  0.19031     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     13   3.35293  0.14020  3.40571  2.77025     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     14   2.89845  3.51682  0.12523  3.41426     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     15   0.15142  3.31082  2.75657  3.20600     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     16   2.89845  3.51682  0.12523  3.41426     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     17   3.35293  0.14020  3.40571  2.77025     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     18   2.89845  3.51682  0.12523  3.41426     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     19   2.89845  3.51682  0.12523  3.41426     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     20   3.35293  0.14020  3.40571  2.77025     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     21   2.89845  3.51682  0.12523  3.41426     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     22   0.15142  3.31082  2.75657  3.20600     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     23   2.89845  3.51682  0.12523  3.41426     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     24   3.35293  0.14020  3.40571  2.77025     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     25   0.15142  3.31082  2.75657  3.20600     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     26   3.01905  2.55078  3.06983  0.19031     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     27   2.89845  3.51682  0.12523  3.41426     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     28   2.89845  3.51682  0.12523  3.41426     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     29   3.35293  0.14020  3.40571  2.77025     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     30   3.35293  0.14020  3.40571  2.77025     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     31   2.89845  3.51682  0.12523  3.41426     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     32   2.89845  3.51682  0.12523  3.41426     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     33   3.01905  2.55078  3.06983  0.19031     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     34   3.35293  0.14020  3.40571  2.77025     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     35   2.89845  3.51682  0.12523  3.41426     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     36   0.15142  3.31082  2.75657  3.20600     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     37   2.89845  3.51682  0.12523  3.41426     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     38   0.15142  3.31082  2.75657  3.20600     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     39   2.89845  3.51682  0.12523  3.41426     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     40   3.01905  2.55078  3.06983  0.19031     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     41   3.35293  0.14020  3.40571  2.77025     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     42   3.35293  0.14020  3.40571  2.77025     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     43   2.89845  3.51682  0.12523  3.41426     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     44   3.01905  2.55078  3.06983  0.19031     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03837  3.97279  3.97279  1.46634  0.26236  1.09861  0.40547
     45   3.01905  2.55078  3.06983  0.19031     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01937  3.95379        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:29 2012
NSEQ  30
EFFN  3.629150
CKSUM 1546314626
STATS LOCAL MSV       -7.4451  0.71931
STATS LOCAL VITERBI   -7.9191  0.71931
STATS LOCAL FORWARD   -4.0575  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.27612  1.35205  1.13329  1.15000
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  0.00000        *
      1   3.01153  3.68153  0.10740  3.59614      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      2   3.54024  0.11813  3.58504  2.90636      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      3   3.01153  3.68153  0.10740  3.59614      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      4   3.54024  0.11813  3.58504  2.90636      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      5   3.54024  0.11813  3.58504  2.90636      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      6   3.01153  3.68153  0.10740  3.59614      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      7   3.18379  2.65555  3.22826  0.16407      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      8   3.18379  2.65555  3.22826  0.16407      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
      9   3.01153  3.68153  0.10740  3.59614      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     10   3.01153  3.68153  0.10740  3.59614     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     11   3.01153  3.68153  0.10740  3.59614     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     12   3.18379  2.65555  3.22826  0.16407     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     13   3.18379  2.65555  3.22826  0.16407     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     14   3.18379  2.65555  3.22826  0.16407     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     15   2.99319  2.20646  3.04534  0.23294     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     16   3.54024  0.11813  3.58504  2.90636     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     17   3.54024  0.11813  3.58504  2.90636     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     18   3.54024  0.11813  3.58504  2.90636     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     19   3.18379  2.65555  3.22826  0.16407     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     20   3.18379  2.65555  3.22826  0.16407     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     21   3.54024  0.11813  3.58504  2.90636     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     22   3.01153  3.68153  0.10740  3.59614     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     23   3.01153  3.68153  0.10740  3.59614     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     24   3.54024  0.11813  3.58504  2.90636     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     25   0.13017  3.47355  2.86220  3.38419     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     26   3.54024  0.11813  3.58504  2.90636     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     27   3.01153  3.68153  0.10740  3.59614     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     28   3.18379  2.65555  3.22826  0.16407     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     29   3.54024  0.11813  3.58504  2.90636     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     30   3.18379  2.65555  3.22826  0.16407     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     31   3.01153  3.68153  0.10740  3.59614     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     32   3.01153  3.68153  0.10740  3.59614     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     33   2.65178  1.53552  2.71648  0.43383     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     34   3.18379  2.65555  3.22826  0.16407     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     35   3.54024  0.11813  3.58504  2.90636     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     36   0.13017  3.47355  2.86220  3.38419     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     37   3.01153  3.68153  0.10740  3.59614     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     38   3.01153  3.68153  0.10740  3.59614     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     39   3.01153  3.68153  0.10740  3.59614     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     40   3.18379  2.65555  3.22826  0.16407     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     41   3.18379  2.65555  3.22826  0.16407     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     42   3.01153  3.68153  0.10740  3.59614     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     43   3.18379  2.65555  3.22826  0.16407     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     44   1.66647  2.28859  2.45050  0.47252     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03491  4.06546  4.06546  1.46634  0.26236  1.09861  0.40547
     45   0.77729  2.22981  2.20691  1.13084     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01761  4.04815        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:20 2012
NSEQ  4
EFFN  3.277344
CKSUM 3008892434
STATS LOCAL MSV       -8.0837  0.71933
STATS LOCAL VITERBI   -7.8221  0.71933
STATS LOCAL FORWARD   -4.2716  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47281  1.61226  1.25134  1.25470
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  0.00000        *
      1   3.41625  0.13224  3.46642  2.81671      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      2   3.07387  2.58576  3.12259  0.18107      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      3   3.07387  2.58576  3.12259  0.18107      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      4   3.07387  2.58576  3.12259  0.18107      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      5   2.93730  3.57289  0.11880  3.47603      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      6   2.93730  3.57289  0.11880  3.47603      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      7   3.07387  2.58576  3.12259  0.18107      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      8   3.07387  2.58576  3.12259  0.18107      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
      9   0.14384  3.36564  2.79241  3.26592      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     10   2.93730  3.57289  0.11880  3.47603     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     11   3.41625  0.13224  3.46642  2.81671     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     12   0.14384  3.36564  2.79241  3.26592     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     13   0.14384  3.36564  2.79241  3.26592     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     14   3.07387  2.58576  3.12259  0.18107     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     15   0.14384  3.36564  2.79241  3.26592     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     16   0.14384  3.36564  2.79241  3.26592     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     17   3.41625  0.13224  3.46642  2.81671     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     18   3.07387  2.58576  3.12259  0.18107     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     19   0.14384  3.36564  2.79241  3.26592     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     20   2.93730  3.57289  0.11880  3.47603     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     21   0.14384  3.36564  2.79241  3.26592     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     22   2.93730  3.57289  0.11880  3.47603     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     23   3.41625  0.13224  3.46642  2.81671     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     24   3.41625  0.13224  3.46642  2.81671     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     25   3.07387  2.58576  3.12259  0.18107     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     26   3.07387  2.58576  3.12259  0.18107     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     27   2.93730  3.57289  0.11880  3.47603     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     28   3.41625  0.13224  3.46642  2.81671     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     29   3.41625  0.13224  3.46642  2.81671     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     30   3.07387  2.58576  3.12259  0.18107     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     31   2.93730  3.57289  0.11880  3.47603     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     32   3.07387  2.58576  3.12259  0.18107     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     33   0.14384  3.36564  2.79241  3.26592     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     34   3.07387  2.58576  3.12259  0.18107     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     35   2.93730  3.57289  0.11880  3.47603     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     36   0.14384  3.36564  2.79241  3.26592     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     37   2.93730  3.57289  0.11880  3.47603     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     38   2.93730  3.57289  0.11880  3.47603     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     39   2.93730  3.57289  0.11880  3.47603     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     40   3.07387  2.58576  3.12259  0.18107     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     41   3.41625  0.13224  3.46642  2.81671     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     42   2.93730  3.57289  0.11880  3.47603     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     43   2.93730  3.57289  0.11880  3.47603     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     44   0.14384  3.36564  2.79241  3.26592     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00321  4.00321  1.46634  0.26236  1.09861  0.40547
     45   3.07387  2.58576  3.12259  0.18107     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98478        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:44:13 2012
NSEQ  4
EFFN  3.386719
CKSUM 43523732
STATS LOCAL MSV       -7.1538  0.71932
STATS LOCAL VITERBI   -7.5801  0.71932
STATS LOCAL FORWARD   -4.0824  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46898  1.58365  1.24528  1.28462
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
      1   2.96162  3.60830  0.11494  3.51511      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      2   2.96162  3.60830  0.11494  3.51511      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      3   3.45647  0.12746  3.50493  2.84597      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      4   0.13925  3.40055  2.81508  3.30414      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      5   3.45647  0.12746  3.50493  2.84597      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      6   3.45647  0.12746  3.50493  2.84597      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      7   3.10913  2.60819  3.15650  0.17540      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      8   0.13925  3.40055  2.81508  3.30414      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      9   3.10913  2.60819  3.15650  0.17540      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     10   2.96162  3.60830  0.11494  3.51511     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     11   0.13925  3.40055  2.81508  3.30414     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     12   3.10913  2.60819  3.15650  0.17540     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     13   0.13925  3.40055  2.81508  3.30414     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     14   0.13925  3.40055  2.81508  3.30414     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     15   3.45647  0.12746  3.50493  2.84597     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     16   3.45647  0.12746  3.50493  2.84597     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     17   3.10913  2.60819  3.15650  0.17540     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     18   3.45647  0.12746  3.50493  2.84597     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     19   0.13925  3.40055  2.81508  3.30414     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     20   3.10913  2.60819  3.15650  0.17540     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     21   2.96162  3.60830  0.11494  3.51511     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     22   2.96162  3.60830  0.11494  3.51511     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     23   2.96162  3.60830  0.11494  3.51511     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     24   3.10913  2.60819  3.15650  0.17540     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     25   0.13925  3.40055  2.81508  3.30414     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     26   3.10913  2.60819  3.15650  0.17540     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     27   2.96162  3.60830  0.11494  3.51511     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     28   3.10913  2.60819  3.15650  0.17540     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     29   3.45647  0.12746  3.50493  2.84597     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     30   3.10913  2.60819  3.15650  0.17540     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     31   2.96162  3.60830  0.11494  3.51511     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     32   2.96162  3.60830  0.11494  3.51511     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     33   2.41679  0.95546  2.48875  0.81386     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     34   3.10913  2.60819  3.15650  0.17540     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     35   2.96162  3.60830  0.11494  3.51511     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     36   0.13925  3.40055  2.81508  3.30414     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     37   2.96162  3.60830  0.11494  3.51511     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     38   2.96162  3.60830  0.11494  3.51511     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     39   2.96162  3.60830  0.11494  3.51511     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     40   3.10913  2.60819  3.15650  0.17540     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     41   3.45647  0.12746  3.50493  2.84597     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     42   3.10913  2.60819  3.15650  0.17540     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     43   0.13925  3.40055  2.81508  3.30414     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     44   0.13925  3.40055  2.81508  3.30414     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     45   3.10913  2.60819  3.15650  0.17540     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:45 2012
NSEQ  2
EFFN  2.000000
CKSUM 4245904999
STATS LOCAL MSV       -7.5548  0.72784
STATS LOCAL VITERBI   -8.4188  0.72784
STATS LOCAL FORWARD   -3.0671  0.72784
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.73881  1.39367  1.16744  1.32824
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.53331  3.02441  0.20344  2.88069     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.57915  2.25909  2.64442  0.28946     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_thirtytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:38 2012
NSEQ  10
EFFN  3.803711
CKSUM 2157164048
STATS LOCAL MSV       -6.7794  0.71932
STATS LOCAL VITERBI   -7.8237  0.71932
STATS LOCAL FORWARD   -3.9341  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.09383  1.36487  1.18062  1.15746
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  0.00000        *
      1   3.04443  3.73013  0.10270  3.65003      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      2   3.59624  0.11233  3.63850  2.94634      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      3   3.59624  0.11233  3.63850  2.94634      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      4   3.04443  3.73013  0.10270  3.65003      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      5   3.23469  2.68782  3.27717  0.15681      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      6   3.23469  2.68782  3.27717  0.15681      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      7   3.04443  3.73013  0.10270  3.65003      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      8   3.04443  3.73013  0.10270  3.65003      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
      9   3.04443  3.73013  0.10270  3.65003      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     10   0.31629  2.96999  1.82122  2.84699     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     11   2.64834  1.45078  2.71369  0.46434     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     12   3.23469  2.68782  3.27717  0.15681     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     13   0.12445  3.52261  2.89373  3.43808     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     14   2.48935  0.93066  2.56039  0.80863     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     15   3.23469  2.68782  3.27717  0.15681     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     16   3.59624  0.11233  3.63850  2.94634     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     17   3.59624  0.11233  3.63850  2.94634     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     18   3.59624  0.11233  3.63850  2.94634     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     19   3.23469  2.68782  3.27717  0.15681     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     20   3.23469  2.68782  3.27717  0.15681     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     21   3.59624  0.11233  3.63850  2.94634     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     22   3.04443  3.73013  0.10270  3.65003     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     23   3.04443  3.73013  0.10270  3.65003     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     24   3.59624  0.11233  3.63850  2.94634     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     25   0.12445  3.52261  2.89373  3.43808     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     26   3.59624  0.11233  3.63850  2.94634     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     27   3.04443  3.73013  0.10270  3.65003     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     28   3.23469  2.68782  3.27717  0.15681     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     29   3.59624  0.11233  3.63850  2.94634     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     30   3.23469  2.68782  3.27717  0.15681     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     31   3.04443  3.73013  0.10270  3.65003     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     32   3.04443  3.73013  0.10270  3.65003     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     33   2.77923  1.70594  2.84012  0.35969     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     34   3.23469  2.68782  3.27717  0.15681     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     35   3.59624  0.11233  3.63850  2.94634     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     36   0.12445  3.52261  2.89373  3.43808     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     37   3.04443  3.73013  0.10270  3.65003     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     38   3.04443  3.73013  0.10270  3.65003     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     39   3.04443  3.73013  0.10270  3.65003     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     40   3.23469  2.68782  3.27717  0.15681     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     41   3.23469  2.68782  3.27717  0.15681     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     42   3.04443  3.73013  0.10270  3.65003     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     43   2.48935  0.93066  2.56039  0.80863     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     44   3.23469  2.68782  3.27717  0.15681     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03388  4.09496  4.09496  1.46634  0.26236  1.09861  0.40547
     45   3.23469  2.68782  3.27717  0.15681     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01708  4.07817        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:10 2012
NSEQ  12
EFFN  3.149414
CKSUM 2840327789
STATS LOCAL MSV       -7.9812  0.71931
STATS LOCAL VITERBI   -7.6469  0.71931
STATS LOCAL FORWARD   -4.0771  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63594  1.21124  1.19814  1.58159
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  0.00000        *
      1   2.90726  3.52948  0.12374  3.42820      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      2   3.36719  0.13835  3.41939  2.78075      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      3   2.90726  3.52948  0.12374  3.42820      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      4   2.90726  3.52948  0.12374  3.42820      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      5   3.03132  2.55863  3.08165  0.18819      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      6   0.14968  3.32315  2.76467  3.21947      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      7   3.03132  2.55863  3.08165  0.18819      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      8   3.36719  0.13835  3.41939  2.78075      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
      9   2.90726  3.52948  0.12374  3.42820      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     10   2.90726  3.52948  0.12374  3.42820     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     11   2.90726  3.52948  0.12374  3.42820     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     12   3.36719  0.13835  3.41939  2.78075     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     13   3.36719  0.13835  3.41939  2.78075     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     14   3.36719  0.13835  3.41939  2.78075     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     15   2.90726  3.52948  0.12374  3.42820     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     16   3.36719  0.13835  3.41939  2.78075     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     17   3.03132  2.55863  3.08165  0.18819     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     18   3.36719  0.13835  3.41939  2.78075     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     19   2.90726  3.52948  0.12374  3.42820     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     20   0.14968  3.32315  2.76467  3.21947     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     21   3.03132  2.55863  3.08165  0.18819     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     22   0.14968  3.32315  2.76467  3.21947     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     23   3.36719  0.13835  3.41939  2.78075     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     24   3.36719  0.13835  3.41939  2.78075     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     25   0.14968  3.32315  2.76467  3.21947     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     26   3.36719  0.13835  3.41939  2.78075     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     27   2.90726  3.52948  0.12374  3.42820     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     28   3.36719  0.13835  3.41939  2.78075     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     29   3.36719  0.13835  3.41939  2.78075     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     30   3.03132  2.55863  3.08165  0.18819     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     31   0.14968  3.32315  2.76467  3.21947     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     32   3.03132  2.55863  3.08165  0.18819     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     33   3.36719  0.13835  3.41939  2.78075     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     34   3.03132  2.55863  3.08165  0.18819     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     35   2.90726  3.52948  0.12374  3.42820     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     36   0.14968  3.32315  2.76467  3.21947     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     37   2.90726  3.52948  0.12374  3.42820     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     38   2.90726  3.52948  0.12374  3.42820     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     39   2.90726  3.52948  0.12374  3.42820     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     40   3.03132  2.55863  3.08165  0.18819     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     41   3.36719  0.13835  3.41939  2.78075     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     42   2.90726  3.52948  0.12374  3.42820     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     43   0.14968  3.32315  2.76467  3.21947     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     44   0.14968  3.32315  2.76467  3.21947     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03810  3.97957  3.97957  1.46634  0.26236  1.09861  0.40547
     45   3.03132  2.55863  3.08165  0.18819     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01923  3.96070        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:37:51 2012
NSEQ  2
EFFN  2.000000
CKSUM 1458850192
STATS LOCAL MSV       -7.6216  0.72751
STATS LOCAL VITERBI   -8.2841  0.72751
STATS LOCAL FORWARD   -3.4635  0.72751
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59062  1.34929  1.16405  1.49362
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twenty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:23 2012
NSEQ  8
EFFN  3.410156
CKSUM 3299966898
STATS LOCAL MSV       -7.1470  0.71933
STATS LOCAL VITERBI   -7.8187  0.71933
STATS LOCAL FORWARD   -3.7441  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.60947  1.21747  1.18790  1.61360
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  0.00000        *
      1   2.96668  3.61569  0.11415  3.52327      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      2   3.11656  2.61290  3.16364  0.17424      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      3   3.46489  0.12648  3.51299  2.85207      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      4   3.46489  0.12648  3.51299  2.85207      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      5   2.96668  3.61569  0.11415  3.52327      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      6   3.11656  2.61290  3.16364  0.17424      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      7   2.96668  3.61569  0.11415  3.52327      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      8   2.96668  3.61569  0.11415  3.52327      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
      9   0.13830  3.40786  2.81982  3.31216      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     10   2.96668  3.61569  0.11415  3.52327     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     11   0.13830  3.40786  2.81982  3.31216     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     12   1.19698  1.21537  2.03661  1.30629     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     13   0.13830  3.40786  2.81982  3.31216     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     14   2.46929  0.67848  2.54147  1.11104     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     15   0.13830  3.40786  2.81982  3.31216     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     16   3.11656  2.61290  3.16364  0.17424     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     17   3.46489  0.12648  3.51299  2.85207     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     18   3.46489  0.12648  3.51299  2.85207     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     19   0.13830  3.40786  2.81982  3.31216     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     20   2.96668  3.61569  0.11415  3.52327     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     21   2.96668  3.61569  0.11415  3.52327     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     22   0.13830  3.40786  2.81982  3.31216     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     23   3.46489  0.12648  3.51299  2.85207     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     24   3.46489  0.12648  3.51299  2.85207     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     25   0.13830  3.40786  2.81982  3.31216     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     26   3.46489  0.12648  3.51299  2.85207     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     27   3.11656  2.61290  3.16364  0.17424     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     28   3.46489  0.12648  3.51299  2.85207     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     29   3.46489  0.12648  3.51299  2.85207     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     30   3.11656  2.61290  3.16364  0.17424     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     31   2.96668  3.61569  0.11415  3.52327     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     32   3.11656  2.61290  3.16364  0.17424     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     33   3.46489  0.12648  3.51299  2.85207     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     34   3.11656  2.61290  3.16364  0.17424     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     35   2.96668  3.61569  0.11415  3.52327     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     36   0.13830  3.40786  2.81982  3.31216     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     37   2.96668  3.61569  0.11415  3.52327     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     38   2.96668  3.61569  0.11415  3.52327     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     39   2.96668  3.61569  0.11415  3.52327     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     40   3.46489  0.12648  3.51299  2.85207     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     41   3.46489  0.12648  3.51299  2.85207     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     42   2.96668  3.61569  0.11415  3.52327     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     43   2.96668  3.61569  0.11415  3.52327     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     44   3.46489  0.12648  3.51299  2.85207     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03630  4.02716  4.02716  1.46634  0.26236  1.09861  0.40547
     45   3.11656  2.61290  3.16364  0.17424     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00918        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:55 2012
NSEQ  2
EFFN  2.000000
CKSUM 3131929729
STATS LOCAL MSV       -7.4499  0.72770
STATS LOCAL VITERBI   -8.1418  0.72770
STATS LOCAL FORWARD   -3.7577  0.72770
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59063  1.34506  1.21353  1.43325
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentyfivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:02 2012
NSEQ  2
EFFN  2.000000
CKSUM 1347837329
STATS LOCAL MSV       -7.4541  0.72721
STATS LOCAL VITERBI   -8.2939  0.72721
STATS LOCAL FORWARD   -3.3636  0.72721
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92452  1.19705  1.08122  1.54745
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentyfiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:10 2012
NSEQ  12
EFFN  3.647461
CKSUM 1179886168
STATS LOCAL MSV       -7.3738  0.71933
STATS LOCAL VITERBI   -7.8429  0.71933
STATS LOCAL FORWARD   -4.1131  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.81069  1.27123  1.12801  1.45975
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
      1   3.54628  0.11749  3.59080  2.91069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      2   3.18923  2.65900  3.23350  0.16327      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      3   2.47123  0.80024  2.54304  0.94759      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      4   3.01510  3.68679  0.10688  3.60196      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      5   2.78751  1.78994  2.84762  0.33761      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      6   3.01510  3.68679  0.10688  3.60196      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      7   0.12954  3.47883  2.86559  3.38998      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      8   3.54628  0.11749  3.59080  2.91069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      9   3.54628  0.11749  3.59080  2.91069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     10   0.68274  2.28073  2.23327  1.25393     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     11   0.12954  3.47883  2.86559  3.38998     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.16186  4.06859  2.02240  1.46634  0.26236  1.09861  0.40547
     12   0.48278  2.39656  2.26531  1.67075     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03942  3.94616  3.94616  1.46634  0.26236  0.22988  1.58293
     13   3.01510  3.68679  0.10688  3.60196     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     14   0.12954  3.47883  2.86559  3.38998     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     15   3.01510  3.68679  0.10688  3.60196     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     16   2.95542  2.11884  3.00916  0.25046     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     17   3.54628  0.11749  3.59080  2.91069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     18   3.54628  0.11749  3.59080  2.91069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     19   3.18923  2.65900  3.23350  0.16327     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     20   3.01510  3.68679  0.10688  3.60196     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     21   3.01510  3.68679  0.10688  3.60196     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     22   3.01510  3.68679  0.10688  3.60196     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     23   3.54628  0.11749  3.59080  2.91069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     24   3.54628  0.11749  3.59080  2.91069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     25   0.12954  3.47883  2.86559  3.38998     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     26   3.54628  0.11749  3.59080  2.91069     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     27   3.01510  3.68679  0.10688  3.60196     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     28   3.54628  0.11749  3.59080  2.91069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     29   3.54628  0.11749  3.59080  2.91069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     30   3.18923  2.65900  3.23350  0.16327     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     31   3.01510  3.68679  0.10688  3.60196     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     32   3.18923  2.65900  3.23350  0.16327     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     33   3.54628  0.11749  3.59080  2.91069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     34   3.18923  2.65900  3.23350  0.16327     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     35   3.01510  3.68679  0.10688  3.60196     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     36   0.12954  3.47883  2.86559  3.38998     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     37   3.01510  3.68679  0.10688  3.60196     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     38   3.01510  3.68679  0.10688  3.60196     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     39   3.01510  3.68679  0.10688  3.60196     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     40   3.18923  2.65900  3.23350  0.16327     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     41   3.54628  0.11749  3.59080  2.91069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     42   3.01510  3.68679  0.10688  3.60196     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     43   3.01510  3.68679  0.10688  3.60196     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     44   3.18923  2.65900  3.23350  0.16327     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     45   3.18923  2.65900  3.23350  0.16327     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:53 2012
NSEQ  4
EFFN  3.183594
CKSUM 3050269107
STATS LOCAL MSV       -8.1539  0.71932
STATS LOCAL VITERBI   -7.6627  0.71932
STATS LOCAL FORWARD   -3.6691  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05456  1.20166  1.14804  1.37082
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
      1   3.38051  0.13666  3.43217  2.79055      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      2   2.91546  3.54130  0.12237  3.44120      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      3   2.91546  3.54130  0.12237  3.44120      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      4   0.14807  3.33468  2.77222  3.23207      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      5   3.38051  0.13666  3.43217  2.79055      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      6   0.14807  3.33468  2.77222  3.23207      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      7   3.04283  2.56598  3.09273  0.18624      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      8   2.91546  3.54130  0.12237  3.44120      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      9   2.91546  3.54130  0.12237  3.44120      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     10   2.91546  3.54130  0.12237  3.44120     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     11   3.38051  0.13666  3.43217  2.79055     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     12   3.04283  2.56598  3.09273  0.18624     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     13   3.04283  2.56598  3.09273  0.18624     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     14   2.91546  3.54130  0.12237  3.44120     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     15   3.04283  2.56598  3.09273  0.18624     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     16   3.38051  0.13666  3.43217  2.79055     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     17   3.38051  0.13666  3.43217  2.79055     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     18   3.38051  0.13666  3.43217  2.79055     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     19   3.38051  0.13666  3.43217  2.79055     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     20   3.04283  2.56598  3.09273  0.18624     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     21   2.91546  3.54130  0.12237  3.44120     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     22   3.04283  2.56598  3.09273  0.18624     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     23   3.38051  0.13666  3.43217  2.79055     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     24   3.38051  0.13666  3.43217  2.79055     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     25   0.14807  3.33468  2.77222  3.23207     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     26   3.04283  2.56598  3.09273  0.18624     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     27   2.91546  3.54130  0.12237  3.44120     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     28   3.04283  2.56598  3.09273  0.18624     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     29   3.38051  0.13666  3.43217  2.79055     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     30   3.04283  2.56598  3.09273  0.18624     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     31   2.91546  3.54130  0.12237  3.44120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     32   2.91546  3.54130  0.12237  3.44120     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     33   3.38051  0.13666  3.43217  2.79055     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     34   3.04283  2.56598  3.09273  0.18624     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     35   3.38051  0.13666  3.43217  2.79055     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     36   0.14807  3.33468  2.77222  3.23207     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     37   2.91546  3.54130  0.12237  3.44120     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     38   2.91546  3.54130  0.12237  3.44120     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     39   2.91546  3.54130  0.12237  3.44120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     40   3.04283  2.56598  3.09273  0.18624     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     41   3.38051  0.13666  3.43217  2.79055     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     42   2.91546  3.54130  0.12237  3.44120     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     43   2.91546  3.54130  0.12237  3.44120     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     44   3.38051  0.13666  3.43217  2.79055     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     45   3.04283  2.56598  3.09273  0.18624     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:43:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 2752150723
STATS LOCAL MSV       -7.4583  0.72844
STATS LOCAL VITERBI   -8.2852  0.72844
STATS LOCAL FORWARD   -3.7436  0.72844
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65923  1.44280  1.31893  1.18408
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.57915  2.25909  2.64442  0.28946     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.81865  0.23582  2.88868  2.35662     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:46 2012
NSEQ  3
EFFN  3.000000
CKSUM 42895608
STATS LOCAL MSV       -7.7972  0.72095
STATS LOCAL VITERBI   -7.8414  0.72095
STATS LOCAL FORWARD   -3.6469  0.72095
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.57109  1.55471  1.08177  1.41908
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   0.66361  1.42357  2.15007  2.05820     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.43440  0.61908  2.50724  1.22957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.86982  3.47591  0.13017  3.36931     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentysixa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:20 2012
NSEQ  27
EFFN  3.312378
CKSUM 1001928202
STATS LOCAL MSV       -8.0269  0.71933
STATS LOCAL VITERBI   -7.7446  0.71933
STATS LOCAL FORWARD   -3.9740  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21823  1.45369  1.60573  1.31008
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  0.00000        *
      1   2.94522  3.58440  0.11753  3.48872      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      2   3.42930  0.13066  3.47892  2.82623      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      3   0.14233  3.37696  2.79978  3.27831      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      4   3.42930  0.13066  3.47892  2.82623      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      5   0.14233  3.37696  2.79978  3.27831      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      6   3.08528  2.59302  3.13356  0.17921      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      7   3.42930  0.13066  3.47892  2.82623      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      8   2.94522  3.58440  0.11753  3.48872      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
      9   3.08528  2.59302  3.13356  0.17921      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     10   0.14233  3.37696  2.79978  3.27831     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     11   3.42930  0.13066  3.47892  2.82623     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     12   0.14233  3.37696  2.79978  3.27831     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     13   0.14233  3.37696  2.79978  3.27831     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     14   3.42930  0.13066  3.47892  2.82623     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     15   0.14233  3.37696  2.79978  3.27831     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     16   2.94522  3.58440  0.11753  3.48872     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     17   3.08528  2.59302  3.13356  0.17921     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     18   0.14233  3.37696  2.79978  3.27831     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     19   3.42930  0.13066  3.47892  2.82623     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     20   2.94522  3.58440  0.11753  3.48872     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     21   0.14233  3.37696  2.79978  3.27831     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     22   3.08528  2.59302  3.13356  0.17921     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     23   2.94522  3.58440  0.11753  3.48872     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     24   3.08528  2.59302  3.13356  0.17921     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     25   0.14233  3.37696  2.79978  3.27831     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     26   3.42930  0.13066  3.47892  2.82623     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     27   0.14233  3.37696  2.79978  3.27831     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     28   3.42930  0.13066  3.47892  2.82623     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     29   0.14233  3.37696  2.79978  3.27831     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     30   3.08528  2.59302  3.13356  0.17921     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     31   3.08528  2.59302  3.13356  0.17921     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     32   3.08528  2.59302  3.13356  0.17921     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     33   3.08528  2.59302  3.13356  0.17921     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     34   3.08528  2.59302  3.13356  0.17921     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     35   2.94522  3.58440  0.11753  3.48872     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     36   0.14233  3.37696  2.79978  3.27831     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     37   2.94522  3.58440  0.11753  3.48872     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     38   3.08528  2.59302  3.13356  0.17921     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     39   2.94522  3.58440  0.11753  3.48872     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     40   3.42930  0.13066  3.47892  2.82623     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     41   3.42930  0.13066  3.47892  2.82623     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     42   3.08528  2.59302  3.13356  0.17921     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     43   0.14233  3.37696  2.79978  3.27831     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     44   3.08528  2.59302  3.13356  0.17921     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00958  4.00958  1.46634  0.26236  1.09861  0.40547
     45   0.14233  3.37696  2.79978  3.27831     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01865  3.99127        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentysixb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:27 2012
NSEQ  6
EFFN  3.336914
CKSUM 1511690450
STATS LOCAL MSV       -8.0062  0.71933
STATS LOCAL VITERBI   -7.8597  0.71933
STATS LOCAL FORWARD   -4.1594  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27761  1.37703  1.70358  1.24848
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  0.00000        *
      1   3.43835  0.12958  3.48758  2.83281      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      2   0.14130  3.38481  2.80488  3.28690      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      3   3.43835  0.12958  3.48758  2.83281      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      4   0.14130  3.38481  2.80488  3.28690      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      5   3.09320  2.59806  3.14118  0.17794      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      6   3.43835  0.12958  3.48758  2.83281      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      7   2.95070  3.59237  0.11666  3.49752      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      8   3.09320  2.59806  3.14118  0.17794      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
      9   0.14130  3.38481  2.80488  3.28690      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     10   3.43835  0.12958  3.48758  2.83281     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     11   3.09320  2.59806  3.14118  0.17794     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     12   0.14130  3.38481  2.80488  3.28690     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     13   3.43835  0.12958  3.48758  2.83281     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     14   3.43835  0.12958  3.48758  2.83281     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     15   0.14130  3.38481  2.80488  3.28690     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     16   2.95070  3.59237  0.11666  3.49752     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     17   3.09320  2.59806  3.14118  0.17794     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     18   0.14130  3.38481  2.80488  3.28690     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     19   3.43835  0.12958  3.48758  2.83281     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     20   2.95070  3.59237  0.11666  3.49752     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     21   0.14130  3.38481  2.80488  3.28690     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     22   3.09320  2.59806  3.14118  0.17794     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     23   2.95070  3.59237  0.11666  3.49752     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     24   3.09320  2.59806  3.14118  0.17794     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     25   0.14130  3.38481  2.80488  3.28690     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     26   3.43835  0.12958  3.48758  2.83281     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     27   0.14130  3.38481  2.80488  3.28690     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     28   3.43835  0.12958  3.48758  2.83281     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     29   0.14130  3.38481  2.80488  3.28690     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     30   3.09320  2.59806  3.14118  0.17794     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     31   3.09320  2.59806  3.14118  0.17794     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     32   3.09320  2.59806  3.14118  0.17794     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     33   3.09320  2.59806  3.14118  0.17794     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     34   3.09320  2.59806  3.14118  0.17794     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     35   2.95070  3.59237  0.11666  3.49752     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     36   0.14130  3.38481  2.80488  3.28690     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     37   2.95070  3.59237  0.11666  3.49752     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     38   3.09320  2.59806  3.14118  0.17794     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     39   2.95070  3.59237  0.11666  3.49752     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     40   3.43835  0.12958  3.48758  2.83281     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     41   3.43835  0.12958  3.48758  2.83281     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     42   3.09320  2.59806  3.14118  0.17794     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     43   0.14130  3.38481  2.80488  3.28690     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     44   3.09320  2.59806  3.14118  0.17794     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03679  4.01402  4.01402  1.46634  0.26236  1.09861  0.40547
     45   0.14130  3.38481  2.80488  3.28690     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01856  3.99580        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentysixc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:42:34 2012
NSEQ  3
EFFN  3.000000
CKSUM 2995473350
STATS LOCAL MSV       -7.8423  0.72105
STATS LOCAL VITERBI   -7.8409  0.72105
STATS LOCAL FORWARD   -4.0058  0.72105
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38925  1.30984  1.63939  1.24905
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   1.34853  2.58976  0.54705  2.44542     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   3.30705  0.14631  3.36166  2.73626     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:43 2012
NSEQ  5
EFFN  3.168945
CKSUM 2402151252
STATS LOCAL MSV       -8.2245  0.71933
STATS LOCAL VITERBI   -7.7908  0.71933
STATS LOCAL FORWARD   -3.7390  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.19200  1.20214  1.09639  1.37168
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
      1   3.37482  0.13738  3.42671  2.78637      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      2   2.91196  3.53626  0.12295  3.43565      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      3   2.91196  3.53626  0.12295  3.43565      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      4   0.14875  3.32976  2.76899  3.22669      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      5   3.37482  0.13738  3.42671  2.78637      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      6   3.37482  0.13738  3.42671  2.78637      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      7   2.91196  3.53626  0.12295  3.43565      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      8   2.91196  3.53626  0.12295  3.43565      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      9   2.91196  3.53626  0.12295  3.43565      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     10   2.91196  3.53626  0.12295  3.43565     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     11   3.03791  2.56284  3.08799  0.18707     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     12   3.03791  2.56284  3.08799  0.18707     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     13   3.37482  0.13738  3.42671  2.78637     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     14   2.91196  3.53626  0.12295  3.43565     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     15   3.03791  2.56284  3.08799  0.18707     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     16   3.37482  0.13738  3.42671  2.78637     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     17   3.37482  0.13738  3.42671  2.78637     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     18   3.37482  0.13738  3.42671  2.78637     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     19   3.37482  0.13738  3.42671  2.78637     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     20   3.03791  2.56284  3.08799  0.18707     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     21   2.91196  3.53626  0.12295  3.43565     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     22   3.03791  2.56284  3.08799  0.18707     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     23   3.37482  0.13738  3.42671  2.78637     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     24   3.37482  0.13738  3.42671  2.78637     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     25   0.14875  3.32976  2.76899  3.22669     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     26   3.03791  2.56284  3.08799  0.18707     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     27   2.91196  3.53626  0.12295  3.43565     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     28   3.03791  2.56284  3.08799  0.18707     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     29   3.37482  0.13738  3.42671  2.78637     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     30   3.03791  2.56284  3.08799  0.18707     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     31   2.91196  3.53626  0.12295  3.43565     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     32   2.91196  3.53626  0.12295  3.43565     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     33   3.37482  0.13738  3.42671  2.78637     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     34   3.03791  2.56284  3.08799  0.18707     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     35   3.37482  0.13738  3.42671  2.78637     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     36   0.14875  3.32976  2.76899  3.22669     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     37   2.91196  3.53626  0.12295  3.43565     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     38   2.91196  3.53626  0.12295  3.43565     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     39   2.91196  3.53626  0.12295  3.43565     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     40   3.03791  2.56284  3.08799  0.18707     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     41   3.37482  0.13738  3.42671  2.78637     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     42   2.91196  3.53626  0.12295  3.43565     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     43   2.91196  3.53626  0.12295  3.43565     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     44   3.03791  2.56284  3.08799  0.18707     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     45   3.03791  2.56284  3.08799  0.18707     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_twentytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:41:31 2012
NSEQ  4
EFFN  3.285156
CKSUM 2170479953
STATS LOCAL MSV       -8.1192  0.71931
STATS LOCAL VITERBI   -7.6756  0.71931
STATS LOCAL FORWARD   -3.9175  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.05755  1.37480  1.20037  1.14488
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
      1   3.41917  0.13188  3.46922  2.81884      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      2   2.93908  3.57547  0.11851  3.47887      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      3   2.93908  3.57547  0.11851  3.47887      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      4   0.14350  3.36817  2.79406  3.26870      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      5   3.41917  0.13188  3.46922  2.81884      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      6   3.41917  0.13188  3.46922  2.81884      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      7   2.93908  3.57547  0.11851  3.47887      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      8   3.07642  2.58739  3.12504  0.18065      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      9   2.93908  3.57547  0.11851  3.47887      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     10   2.93908  3.57547  0.11851  3.47887     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     11   3.07642  2.58739  3.12504  0.18065     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     12   3.07642  2.58739  3.12504  0.18065     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     13   3.07642  2.58739  3.12504  0.18065     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     14   3.07642  2.58739  3.12504  0.18065     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     15   3.07642  2.58739  3.12504  0.18065     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     16   3.41917  0.13188  3.46922  2.81884     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     17   3.07642  2.58739  3.12504  0.18065     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     18   0.14350  3.36817  2.79406  3.26870     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     19   3.41917  0.13188  3.46922  2.81884     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     20   3.07642  2.58739  3.12504  0.18065     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     21   2.93908  3.57547  0.11851  3.47887     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     22   3.07642  2.58739  3.12504  0.18065     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     23   3.41917  0.13188  3.46922  2.81884     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     24   3.41917  0.13188  3.46922  2.81884     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     25   0.14350  3.36817  2.79406  3.26870     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     26   3.07642  2.58739  3.12504  0.18065     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     27   2.93908  3.57547  0.11851  3.47887     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     28   3.07642  2.58739  3.12504  0.18065     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     29   3.41917  0.13188  3.46922  2.81884     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     30   3.07642  2.58739  3.12504  0.18065     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     31   2.93908  3.57547  0.11851  3.47887     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     32   2.93908  3.57547  0.11851  3.47887     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     33   3.41917  0.13188  3.46922  2.81884     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     34   3.07642  2.58739  3.12504  0.18065     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     35   3.41917  0.13188  3.46922  2.81884     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     36   0.14350  3.36817  2.79406  3.26870     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     37   2.93908  3.57547  0.11851  3.47887     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     38   2.93908  3.57547  0.11851  3.47887     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     39   2.93908  3.57547  0.11851  3.47887     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     40   3.07642  2.58739  3.12504  0.18065     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     41   3.41917  0.13188  3.46922  2.81884     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     42   2.93908  3.57547  0.11851  3.47887     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     43   2.93908  3.57547  0.11851  3.47887     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     44   3.07642  2.58739  3.12504  0.18065     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     45   3.07642  2.58739  3.12504  0.18065     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Metazoa_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sat Feb 25 14:32:02 2012
NSEQ  2
EFFN  2.000000
CKSUM 2895312499
STATS LOCAL MSV       -7.3425  0.72926
STATS LOCAL VITERBI   -8.4252  0.72926
STATS LOCAL FORWARD   -3.6064  0.72926
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49454  1.29882  1.37030  1.39126
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   1.01448  1.11006  1.95471  1.79419     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   0.23862  2.84929  2.43386  2.70756     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   0.23862  2.84929  2.43386  2.70756     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   0.23862  2.84929  2.43386  2.70756     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.81865  0.23582  2.88868  2.35662     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.15554  1.00938  2.23102  0.88601     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.57915  2.25909  2.64442  0.28946     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eighta_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:27 2012
NSEQ  6
EFFN  3.717773
CKSUM 2863453789
STATS LOCAL MSV       -7.0487  0.71932
STATS LOCAL VITERBI   -7.6344  0.71932
STATS LOCAL FORWARD   -4.3819  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38691  1.48592  1.27857  1.40476
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  0.00000        *
      1   3.20992  2.67212  3.25337  0.16030      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      2   3.20992  2.67212  3.25337  0.16030      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      3   0.12719  3.49881  2.87844  3.41192      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      4   2.56541  0.58969  2.63638  1.21405      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      5   3.56911  0.11510  3.61260  2.92701      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      6   3.56911  0.11510  3.61260  2.92701      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      7   3.20992  2.67212  3.25337  0.16030      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      8   3.02853  3.70662  0.10494  3.62394      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
      9   0.12719  3.49881  2.87844  3.41192      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     10   0.12719  3.49881  2.87844  3.41192     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     11   3.56911  0.11510  3.61260  2.92701     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     12   3.02853  3.70662  0.10494  3.62394     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     13   3.02853  3.70662  0.10494  3.62394     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     14   3.20992  2.67212  3.25337  0.16030     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     15   3.02853  3.70662  0.10494  3.62394     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     16   3.02853  3.70662  0.10494  3.62394     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     17   0.12719  3.49881  2.87844  3.41192     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     18   3.20992  2.67212  3.25337  0.16030     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     19   3.56911  0.11510  3.61260  2.92701     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     20   0.12719  3.49881  2.87844  3.41192     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     21   3.56911  0.11510  3.61260  2.92701     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     22   3.20992  2.67212  3.25337  0.16030     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     23   3.20992  2.67212  3.25337  0.16030     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     24   3.02853  3.70662  0.10494  3.62394     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     25   3.02853  3.70662  0.10494  3.62394     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     26   3.56911  0.11510  3.61260  2.92701     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     27   3.20992  2.67212  3.25337  0.16030     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     28   3.56911  0.11510  3.61260  2.92701     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     29   3.02853  3.70662  0.10494  3.62394     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     30   3.20992  2.67212  3.25337  0.16030     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     31   1.34314  2.72390  0.51432  2.58430     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     32   1.34314  2.72390  0.51432  2.58430     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     33   0.48700  2.71970  1.41005  2.58348     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     34   3.20992  2.67212  3.25337  0.16030     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     35   3.56911  0.11510  3.61260  2.92701     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     36   3.02853  3.70662  0.10494  3.62394     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     37   0.12719  3.49881  2.87844  3.41192     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     38   3.20992  2.67212  3.25337  0.16030     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     39   3.02853  3.70662  0.10494  3.62394     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     40   0.12719  3.49881  2.87844  3.41192     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     41   0.12719  3.49881  2.87844  3.41192     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     42   3.02853  3.70662  0.10494  3.62394     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     43   0.12719  3.49881  2.87844  3.41192     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     44   0.12719  3.49881  2.87844  3.41192     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03438  4.08055  4.08055  1.46634  0.26236  1.09861  0.40547
     45   3.56911  0.11510  3.61260  2.92701     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01734  4.06350        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eightb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:34 2012
NSEQ  5
EFFN  3.139648
CKSUM 359213837
STATS LOCAL MSV       -8.0901  0.71933
STATS LOCAL VITERBI   -7.7074  0.71933
STATS LOCAL FORWARD   -4.3936  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40304  1.33441  1.19644  1.66830
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  0.00000        *
      1   3.36335  0.13885  3.41571  2.77793      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      2   0.15014  3.31984  2.76249  3.21585      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      3   0.15014  3.31984  2.76249  3.21585      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      4   3.36335  0.13885  3.41571  2.77793      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      5   3.36335  0.13885  3.41571  2.77793      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      6   3.36335  0.13885  3.41571  2.77793      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      7   3.02802  2.55652  3.07847  0.18876      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      8   2.90489  3.52608  0.12414  3.42445      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
      9   0.15014  3.31984  2.76249  3.21585      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     10   0.15014  3.31984  2.76249  3.21585     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     11   3.36335  0.13885  3.41571  2.77793     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     12   2.90489  3.52608  0.12414  3.42445     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     13   2.90489  3.52608  0.12414  3.42445     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     14   3.02802  2.55652  3.07847  0.18876     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     15   2.90489  3.52608  0.12414  3.42445     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     16   2.90489  3.52608  0.12414  3.42445     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     17   0.15014  3.31984  2.76249  3.21585     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     18   3.02802  2.55652  3.07847  0.18876     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     19   3.36335  0.13885  3.41571  2.77793     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     20   0.15014  3.31984  2.76249  3.21585     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     21   3.36335  0.13885  3.41571  2.77793     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     22   3.02802  2.55652  3.07847  0.18876     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     23   3.36335  0.13885  3.41571  2.77793     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     24   2.90489  3.52608  0.12414  3.42445     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     25   2.90489  3.52608  0.12414  3.42445     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     26   3.36335  0.13885  3.41571  2.77793     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     27   3.02802  2.55652  3.07847  0.18876     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     28   3.36335  0.13885  3.41571  2.77793     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     29   2.90489  3.52608  0.12414  3.42445     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     30   3.02802  2.55652  3.07847  0.18876     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     31   2.90489  3.52608  0.12414  3.42445     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     32   2.90489  3.52608  0.12414  3.42445     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     33   2.90489  3.52608  0.12414  3.42445     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     34   3.02802  2.55652  3.07847  0.18876     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     35   3.36335  0.13885  3.41571  2.77793     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     36   2.90489  3.52608  0.12414  3.42445     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     37   0.15014  3.31984  2.76249  3.21585     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     38   3.02802  2.55652  3.07847  0.18876     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     39   2.90489  3.52608  0.12414  3.42445     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     40   0.15014  3.31984  2.76249  3.21585     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     41   0.15014  3.31984  2.76249  3.21585     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     42   2.90489  3.52608  0.12414  3.42445     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     43   0.15014  3.31984  2.76249  3.21585     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     44   0.15014  3.31984  2.76249  3.21585     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03818  3.97775  3.97775  1.46634  0.26236  1.09861  0.40547
     45   3.36335  0.13885  3.41571  2.77793     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01927  3.95884        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eightc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:40 2012
NSEQ  6
EFFN  3.131836
CKSUM 2150464050
STATS LOCAL MSV       -7.9202  0.71931
STATS LOCAL VITERBI   -7.7385  0.71931
STATS LOCAL FORWARD   -4.2104  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47401  1.33573  1.14243  1.66609
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  0.00000        *
      1   3.02537  2.55482  3.07592  0.18922      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      2   3.36028  0.13924  3.41276  2.77566      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      3   0.15052  3.31717  2.76074  3.21294      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      4   3.36028  0.13924  3.41276  2.77566      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      5   3.36028  0.13924  3.41276  2.77566      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      6   3.36028  0.13924  3.41276  2.77566      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      7   0.15052  3.31717  2.76074  3.21294      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      8   2.90299  3.52335  0.12446  3.42144      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
      9   2.90299  3.52335  0.12446  3.42144      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     10   0.15052  3.31717  2.76074  3.21294     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     11   3.36028  0.13924  3.41276  2.77566     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     12   2.90299  3.52335  0.12446  3.42144     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     13   2.90299  3.52335  0.12446  3.42144     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     14   3.02537  2.55482  3.07592  0.18922     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     15   2.90299  3.52335  0.12446  3.42144     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     16   2.90299  3.52335  0.12446  3.42144     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     17   0.15052  3.31717  2.76074  3.21294     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     18   3.02537  2.55482  3.07592  0.18922     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     19   3.36028  0.13924  3.41276  2.77566     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     20   0.15052  3.31717  2.76074  3.21294     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     21   3.36028  0.13924  3.41276  2.77566     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     22   3.02537  2.55482  3.07592  0.18922     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     23   3.36028  0.13924  3.41276  2.77566     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     24   2.90299  3.52335  0.12446  3.42144     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     25   2.90299  3.52335  0.12446  3.42144     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     26   3.36028  0.13924  3.41276  2.77566     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     27   3.02537  2.55482  3.07592  0.18922     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     28   3.36028  0.13924  3.41276  2.77566     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     29   2.90299  3.52335  0.12446  3.42144     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     30   3.02537  2.55482  3.07592  0.18922     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     31   2.90299  3.52335  0.12446  3.42144     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     32   2.90299  3.52335  0.12446  3.42144     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     33   2.90299  3.52335  0.12446  3.42144     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     34   3.02537  2.55482  3.07592  0.18922     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     35   3.36028  0.13924  3.41276  2.77566     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     36   2.90299  3.52335  0.12446  3.42144     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     37   0.15052  3.31717  2.76074  3.21294     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     38   3.02537  2.55482  3.07592  0.18922     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     39   2.90299  3.52335  0.12446  3.42144     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     40   0.15052  3.31717  2.76074  3.21294     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     41   0.15052  3.31717  2.76074  3.21294     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     42   2.90299  3.52335  0.12446  3.42144     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     43   0.15052  3.31717  2.76074  3.21294     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     44   0.15052  3.31717  2.76074  3.21294     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03823  3.97628  3.97628  1.46634  0.26236  1.09861  0.40547
     45   3.36028  0.13924  3.41276  2.77566     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01930  3.95735        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eightd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:46 2012
NSEQ  4
EFFN  3.144531
CKSUM 621050015
STATS LOCAL MSV       -8.0901  0.71931
STATS LOCAL VITERBI   -7.7041  0.71931
STATS LOCAL FORWARD   -4.3950  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40305  1.33436  1.19640  1.66841
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  0.00000        *
      1   3.36527  0.13860  3.41755  2.77934      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      2   0.14991  3.32150  2.76358  3.21766      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      3   0.14991  3.32150  2.76358  3.21766      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      4   3.36527  0.13860  3.41755  2.77934      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      5   3.36527  0.13860  3.41755  2.77934      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      6   3.36527  0.13860  3.41755  2.77934      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      7   3.02967  2.55757  3.08006  0.18848      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      8   2.90608  3.52778  0.12394  3.42632      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
      9   0.14991  3.32150  2.76358  3.21766      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     10   0.14991  3.32150  2.76358  3.21766     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     11   3.36527  0.13860  3.41755  2.77934     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     12   2.90608  3.52778  0.12394  3.42632     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     13   2.90608  3.52778  0.12394  3.42632     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     14   3.02967  2.55757  3.08006  0.18848     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     15   2.90608  3.52778  0.12394  3.42632     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     16   2.90608  3.52778  0.12394  3.42632     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     17   0.14991  3.32150  2.76358  3.21766     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     18   3.02967  2.55757  3.08006  0.18848     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     19   3.36527  0.13860  3.41755  2.77934     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     20   0.14991  3.32150  2.76358  3.21766     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     21   3.36527  0.13860  3.41755  2.77934     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     22   3.02967  2.55757  3.08006  0.18848     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     23   3.36527  0.13860  3.41755  2.77934     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     24   2.90608  3.52778  0.12394  3.42632     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     25   2.90608  3.52778  0.12394  3.42632     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     26   3.36527  0.13860  3.41755  2.77934     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     27   3.02967  2.55757  3.08006  0.18848     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     28   3.36527  0.13860  3.41755  2.77934     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     29   2.90608  3.52778  0.12394  3.42632     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     30   3.02967  2.55757  3.08006  0.18848     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     31   2.90608  3.52778  0.12394  3.42632     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     32   2.90608  3.52778  0.12394  3.42632     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     33   2.90608  3.52778  0.12394  3.42632     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     34   3.02967  2.55757  3.08006  0.18848     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     35   3.36527  0.13860  3.41755  2.77934     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     36   2.90608  3.52778  0.12394  3.42632     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     37   0.14991  3.32150  2.76358  3.21766     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     38   3.02967  2.55757  3.08006  0.18848     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     39   2.90608  3.52778  0.12394  3.42632     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     40   0.14991  3.32150  2.76358  3.21766     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     41   0.14991  3.32150  2.76358  3.21766     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     42   2.90608  3.52778  0.12394  3.42632     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     43   0.14991  3.32150  2.76358  3.21766     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     44   0.14991  3.32150  2.76358  3.21766     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03814  3.97866  3.97866  1.46634  0.26236  1.09861  0.40547
     45   3.36527  0.13860  3.41755  2.77934     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01925  3.95977        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:25:28 2012
NSEQ  4
EFFN  3.402344
CKSUM 2172714013
STATS LOCAL MSV       -7.1051  0.71931
STATS LOCAL VITERBI   -7.8590  0.71931
STATS LOCAL FORWARD   -3.9748  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32697  1.77182  1.24425  1.28540
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  0.00000        *
      1   0.13862  3.40543  2.81825  3.30949      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      2   3.11409  2.61134  3.16126  0.17462      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      3   0.13862  3.40543  2.81825  3.30949      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      4   2.41957  0.95497  2.49149  0.81322      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      5   3.11409  2.61134  3.16126  0.17462      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      6   3.11409  2.61134  3.16126  0.17462      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      7   3.11409  2.61134  3.16126  0.17462      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      8   2.96500  3.61323  0.11441  3.52056      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
      9   0.13862  3.40543  2.81825  3.30949      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     10   2.96500  3.61323  0.11441  3.52056     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     11   3.46209  0.12680  3.51031  2.85005     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     12   0.13862  3.40543  2.81825  3.30949     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     13   2.96500  3.61323  0.11441  3.52056     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     14   3.11409  2.61134  3.16126  0.17462     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     15   2.96500  3.61323  0.11441  3.52056     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     16   2.96500  3.61323  0.11441  3.52056     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     17   0.13862  3.40543  2.81825  3.30949     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     18   3.11409  2.61134  3.16126  0.17462     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     19   3.46209  0.12680  3.51031  2.85005     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     20   0.13862  3.40543  2.81825  3.30949     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     21   3.46209  0.12680  3.51031  2.85005     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     22   3.11409  2.61134  3.16126  0.17462     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     23   2.96500  3.61323  0.11441  3.52056     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     24   2.96500  3.61323  0.11441  3.52056     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     25   2.96500  3.61323  0.11441  3.52056     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     26   3.11409  2.61134  3.16126  0.17462     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     27   3.11409  2.61134  3.16126  0.17462     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     28   3.46209  0.12680  3.51031  2.85005     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     29   2.96500  3.61323  0.11441  3.52056     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     30   3.11409  2.61134  3.16126  0.17462     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     31   3.11409  2.61134  3.16126  0.17462     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     32   2.96500  3.61323  0.11441  3.52056     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     33   2.96500  3.61323  0.11441  3.52056     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     34   3.11409  2.61134  3.16126  0.17462     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     35   3.46209  0.12680  3.51031  2.85005     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     36   2.96500  3.61323  0.11441  3.52056     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     37   0.13862  3.40543  2.81825  3.30949     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     38   3.11409  2.61134  3.16126  0.17462     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     39   2.96500  3.61323  0.11441  3.52056     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     40   0.13862  3.40543  2.81825  3.30949     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     41   0.13862  3.40543  2.81825  3.30949     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     42   0.13862  3.40543  2.81825  3.30949     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     43   0.13862  3.40543  2.81825  3.30949     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     44   0.13862  3.40543  2.81825  3.30949     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03635  4.02577  4.02577  1.46634  0.26236  1.09861  0.40547
     45   3.46209  0.12680  3.51031  2.85005     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01834  4.00776        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:19 2012
NSEQ  3
EFFN  3.000000
CKSUM 102249527
STATS LOCAL MSV       -7.9658  0.72022
STATS LOCAL VITERBI   -7.9027  0.72022
STATS LOCAL FORWARD   -4.1930  0.72022
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40169  1.39125  1.31583  1.44052
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   3.30705  0.14631  3.36166  2.73626     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:23:16 2012
NSEQ  9
EFFN  3.168457
CKSUM 1135211888
STATS LOCAL MSV       -8.0522  0.71931
STATS LOCAL VITERBI   -7.8212  0.71931
STATS LOCAL FORWARD   -4.0461  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40316  1.39893  1.19534  1.58612
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
      1   3.03775  2.56273  3.08783  0.18710      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      2   3.37463  0.13741  3.42653  2.78623      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      3   0.14877  3.32959  2.76888  3.22651      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      4   3.37463  0.13741  3.42653  2.78623      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      5   0.14877  3.32959  2.76888  3.22651      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      6   3.37463  0.13741  3.42653  2.78623      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      7   3.37463  0.13741  3.42653  2.78623      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      8   2.91185  3.53609  0.12297  3.43546      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      9   3.03775  2.56273  3.08783  0.18710      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     10   0.14877  3.32959  2.76888  3.22651     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     11   3.37463  0.13741  3.42653  2.78623     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     12   0.14877  3.32959  2.76888  3.22651     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     13   2.91185  3.53609  0.12297  3.43546     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     14   3.03775  2.56273  3.08783  0.18710     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     15   2.91185  3.53609  0.12297  3.43546     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     16   2.91185  3.53609  0.12297  3.43546     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     17   0.14877  3.32959  2.76888  3.22651     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     18   3.03775  2.56273  3.08783  0.18710     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     19   3.37463  0.13741  3.42653  2.78623     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     20   0.14877  3.32959  2.76888  3.22651     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     21   3.37463  0.13741  3.42653  2.78623     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     22   3.03775  2.56273  3.08783  0.18710     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     23   3.03775  2.56273  3.08783  0.18710     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     24   2.91185  3.53609  0.12297  3.43546     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     25   2.91185  3.53609  0.12297  3.43546     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     26   3.37463  0.13741  3.42653  2.78623     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     27   3.03775  2.56273  3.08783  0.18710     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     28   3.37463  0.13741  3.42653  2.78623     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     29   2.91185  3.53609  0.12297  3.43546     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     30   2.91185  3.53609  0.12297  3.43546     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     31   2.91185  3.53609  0.12297  3.43546     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     32   2.91185  3.53609  0.12297  3.43546     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     33   2.91185  3.53609  0.12297  3.43546     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     34   3.03775  2.56273  3.08783  0.18710     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     35   3.37463  0.13741  3.42653  2.78623     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     36   2.91185  3.53609  0.12297  3.43546     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     37   0.14877  3.32959  2.76888  3.22651     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     38   3.03775  2.56273  3.08783  0.18710     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     39   2.91185  3.53609  0.12297  3.43546     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     40   0.14877  3.32959  2.76888  3.22651     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     41   0.14877  3.32959  2.76888  3.22651     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     42   2.91185  3.53609  0.12297  3.43546     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     43   0.14877  3.32959  2.76888  3.22651     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     44   0.14877  3.32959  2.76888  3.22651     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     45   3.37463  0.13741  3.42653  2.78623     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:34 2012
NSEQ  2
EFFN  2.000000
CKSUM 2657386057
STATS LOCAL MSV       -7.6114  0.72740
STATS LOCAL VITERBI   -8.1839  0.72740
STATS LOCAL FORWARD   -3.5106  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52168  1.35229  1.16662  1.55311
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:41 2012
NSEQ  6
EFFN  3.413086
CKSUM 1109677504
STATS LOCAL MSV       -7.3172  0.71933
STATS LOCAL VITERBI   -7.5061  0.71933
STATS LOCAL FORWARD   -4.2818  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39650  1.43701  1.27755  1.44315
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
      1   3.11748  2.61349  3.16453  0.17409      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      2   3.46593  0.12636  3.51399  2.85283      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      3   0.13819  3.40877  2.82041  3.31315      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      4   3.46593  0.12636  3.51399  2.85283      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      5   3.11748  2.61349  3.16453  0.17409      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      6   3.46593  0.12636  3.51399  2.85283      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      7   3.11748  2.61349  3.16453  0.17409      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      8   0.13819  3.40877  2.82041  3.31315      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      9   0.13819  3.40877  2.82041  3.31315      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     10   2.96731  3.61661  0.11405  3.52429     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     11   3.46593  0.12636  3.51399  2.85283     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     12   2.96731  3.61661  0.11405  3.52429     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     13   2.96731  3.61661  0.11405  3.52429     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     14   3.11748  2.61349  3.16453  0.17409     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     15   2.96731  3.61661  0.11405  3.52429     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     16   2.96731  3.61661  0.11405  3.52429     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     17   0.13819  3.40877  2.82041  3.31315     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     18   3.11748  2.61349  3.16453  0.17409     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     19   3.46593  0.12636  3.51399  2.85283     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     20   0.13819  3.40877  2.82041  3.31315     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     21   3.46593  0.12636  3.51399  2.85283     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     22   3.11748  2.61349  3.16453  0.17409     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     23   2.74264  1.80999  2.80364  0.34058     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     24   2.96731  3.61661  0.11405  3.52429     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     25   2.96731  3.61661  0.11405  3.52429     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     26   3.46593  0.12636  3.51399  2.85283     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     27   3.11748  2.61349  3.16453  0.17409     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     28   3.46593  0.12636  3.51399  2.85283     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     29   0.13819  3.40877  2.82041  3.31315     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     30   3.11748  2.61349  3.16453  0.17409     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     31   2.96731  3.61661  0.11405  3.52429     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     32   2.15655  1.42170  0.64537  2.13283     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     33   2.96731  3.61661  0.11405  3.52429     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     34   3.11748  2.61349  3.16453  0.17409     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     35   3.46593  0.12636  3.51399  2.85283     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     36   2.96731  3.61661  0.11405  3.52429     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     37   0.13819  3.40877  2.82041  3.31315     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     38   3.11748  2.61349  3.16453  0.17409     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     39   2.96731  3.61661  0.11405  3.52429     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     40   0.13819  3.40877  2.82041  3.31315     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     41   0.13819  3.40877  2.82041  3.31315     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     42   2.96731  3.61661  0.11405  3.52429     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     43   0.13819  3.40877  2.82041  3.31315     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     44   0.13819  3.40877  2.82041  3.31315     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     45   3.46593  0.12636  3.51399  2.85283     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_foura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:15 2012
NSEQ  18
EFFN  3.476074
CKSUM 217135792
STATS LOCAL MSV       -7.4129  0.71931
STATS LOCAL VITERBI   -7.8161  0.71931
STATS LOCAL FORWARD   -4.2841  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.37384  1.58932  1.21260  1.40496
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  0.00000        *
      1   2.43287  0.95742  2.50459  0.80603      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      2   0.13573  3.42814  2.83293  3.33438      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      3   0.13573  3.42814  2.83293  3.33438      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      4   0.13573  3.42814  2.83293  3.33438      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      5   3.13720  2.62601  3.18348  0.17104      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      6   3.48819  0.12383  3.53528  2.86892      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      7   3.13720  2.62601  3.18348  0.17104      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      8   3.13720  2.62601  3.18348  0.17104      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
      9   1.17399  2.60648  0.63128  2.46315      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     10   2.98064  3.63611  0.11200  3.54585     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     11   3.48819  0.12383  3.53528  2.86892     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     12   2.98064  3.63611  0.11200  3.54585     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     13   2.98064  3.63611  0.11200  3.54585     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     14   3.13720  2.62601  3.18348  0.17104     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     15   2.98064  3.63611  0.11200  3.54585     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     16   2.98064  3.63611  0.11200  3.54585     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     17   0.13573  3.42814  2.83293  3.33438     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     18   3.13720  2.62601  3.18348  0.17104     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     19   3.48819  0.12383  3.53528  2.86892     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     20   0.13573  3.42814  2.83293  3.33438     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     21   3.48819  0.12383  3.53528  2.86892     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     22   3.13720  2.62601  3.18348  0.17104     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     23   3.48819  0.12383  3.53528  2.86892     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     24   2.98064  3.63611  0.11200  3.54585     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     25   2.98064  3.63611  0.11200  3.54585     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     26   3.13720  2.62601  3.18348  0.17104     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     27   3.13720  2.62601  3.18348  0.17104     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     28   3.48819  0.12383  3.53528  2.86892     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     29   2.98064  3.63611  0.11200  3.54585     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     30   3.13720  2.62601  3.18348  0.17104     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     31   2.98064  3.63611  0.11200  3.54585     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     32   2.98064  3.63611  0.11200  3.54585     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     33   0.13573  3.42814  2.83293  3.33438     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     34   3.13720  2.62601  3.18348  0.17104     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     35   3.48819  0.12383  3.53528  2.86892     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     36   2.98064  3.63611  0.11200  3.54585     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     37   0.13573  3.42814  2.83293  3.33438     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     38   3.13720  2.62601  3.18348  0.17104     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     39   2.98064  3.63611  0.11200  3.54585     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     40   0.13573  3.42814  2.83293  3.33438     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     41   0.13573  3.42814  2.83293  3.33438     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     42   2.98064  3.63611  0.11200  3.54585     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     43   0.13573  3.42814  2.83293  3.33438     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     44   0.13573  3.42814  2.83293  3.33438     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03587  4.03884  4.03884  1.46634  0.26236  1.09861  0.40547
     45   3.48819  0.12383  3.53528  2.86892     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01810  4.02107        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:21 2012
NSEQ  21
EFFN  3.811890
CKSUM 3684173544
STATS LOCAL MSV       -7.2077  0.71932
STATS LOCAL VITERBI   -7.7384  0.71932
STATS LOCAL FORWARD   -4.3623  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40447  1.49377  1.24618  1.41726
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  0.00000        *
      1   1.19857  2.20788  2.27181  0.72295      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      2   0.95279  1.38377  2.07939  1.43256      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      3   0.12420  3.52484  2.89516  3.44053      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      4   3.59878  0.11207  3.64093  2.94815      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      5   3.23702  2.68930  3.27941  0.15649      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      6   3.59878  0.11207  3.64093  2.94815      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      7   3.23702  2.68930  3.27941  0.15649      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      8   2.17429  2.46440  2.76572  0.30338      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
      9   0.12420  3.52484  2.89516  3.44053      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     10   3.04591  3.73233  0.10249  3.65247     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     11   3.59878  0.11207  3.64093  2.94815     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     12   3.04591  3.73233  0.10249  3.65247     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     13   3.04591  3.73233  0.10249  3.65247     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     14   3.23702  2.68930  3.27941  0.15649     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     15   3.04591  3.73233  0.10249  3.65247     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     16   3.04591  3.73233  0.10249  3.65247     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     17   0.12420  3.52484  2.89516  3.44053     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     18   3.23702  2.68930  3.27941  0.15649     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     19   3.59878  0.11207  3.64093  2.94815     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     20   0.12420  3.52484  2.89516  3.44053     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     21   3.59878  0.11207  3.64093  2.94815     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     22   3.23702  2.68930  3.27941  0.15649     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     23   2.55962  1.24157  2.62790  0.57713     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     24   3.04591  3.73233  0.10249  3.65247     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     25   3.04591  3.73233  0.10249  3.65247     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     26   3.59878  0.11207  3.64093  2.94815     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     27   3.23702  2.68930  3.27941  0.15649     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     28   3.59878  0.11207  3.64093  2.94815     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     29   1.94837  3.11578  0.27045  2.99346     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     30   3.23702  2.68930  3.27941  0.15649     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     31   3.04591  3.73233  0.10249  3.65247     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     32   3.04591  3.73233  0.10249  3.65247     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     33   0.12420  3.52484  2.89516  3.44053     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     34   3.23702  2.68930  3.27941  0.15649     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     35   3.59878  0.11207  3.64093  2.94815     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     36   3.04591  3.73233  0.10249  3.65247     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     37   0.12420  3.52484  2.89516  3.44053     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     38   3.23702  2.68930  3.27941  0.15649     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     39   3.04591  3.73233  0.10249  3.65247     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     40   0.12420  3.52484  2.89516  3.44053     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     41   0.12420  3.52484  2.89516  3.44053     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     42   3.04591  3.73233  0.10249  3.65247     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     43   0.12420  3.52484  2.89516  3.44053     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     44   0.12420  3.52484  2.89516  3.44053     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03383  4.09632  4.09632  1.46634  0.26236  1.09861  0.40547
     45   3.59878  0.11207  3.64093  2.94815     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01706  4.07955        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:25 2012
NSEQ  3
EFFN  3.000000
CKSUM 485987772
STATS LOCAL MSV       -7.9007  0.72085
STATS LOCAL VITERBI   -7.9323  0.72085
STATS LOCAL FORWARD   -4.0009  0.72085
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31900  1.60612  1.33370  1.31516
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   1.34853  2.58976  0.54705  2.44542      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   0.15719  3.27118  2.73043  3.16274     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:37 2012
NSEQ  62
EFFN  3.515503
CKSUM 970865132
STATS LOCAL MSV       -7.4111  0.71932
STATS LOCAL VITERBI   -7.8849  0.71932
STATS LOCAL FORWARD   -4.2467  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34248  1.52639  1.35353  1.33501
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  0.00000        *
      1   3.50187  0.12230  3.54836  2.87879      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      2   0.13425  3.44005  2.84062  3.34744      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      3   0.13425  3.44005  2.84062  3.34744      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      4   2.98879  3.64807  0.11077  3.55908      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      5   3.14938  2.63373  3.19519  0.16919      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      6   3.50187  0.12230  3.54836  2.87879      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      7   3.14938  2.63373  3.19519  0.16919      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      8   3.14938  2.63373  3.19519  0.16919      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
      9   0.33003  2.89879  1.81100  2.77229      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     10   3.14938  2.63373  3.19519  0.16919     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     11   3.50187  0.12230  3.54836  2.87879     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     12   2.98879  3.64807  0.11077  3.55908     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     13   2.98879  3.64807  0.11077  3.55908     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     14   3.14938  2.63373  3.19519  0.16919     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     15   2.98879  3.64807  0.11077  3.55908     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     16   2.98879  3.64807  0.11077  3.55908     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     17   0.13425  3.44005  2.84062  3.34744     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     18   3.14938  2.63373  3.19519  0.16919     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     19   3.50187  0.12230  3.54836  2.87879     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     20   0.13425  3.44005  2.84062  3.34744     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     21   3.50187  0.12230  3.54836  2.87879     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     22   3.14938  2.63373  3.19519  0.16919     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     23   3.50187  0.12230  3.54836  2.87879     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     24   2.98879  3.64807  0.11077  3.55908     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     25   2.98879  3.64807  0.11077  3.55908     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     26   3.14938  2.63373  3.19519  0.16919     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     27   3.14938  2.63373  3.19519  0.16919     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     28   3.50187  0.12230  3.54836  2.87879     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     29   2.98879  3.64807  0.11077  3.55908     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     30   3.14938  2.63373  3.19519  0.16919     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     31   0.13425  3.44005  2.84062  3.34744     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     32   2.98879  3.64807  0.11077  3.55908     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     33   1.83933  2.10339  1.47710  0.71185     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     34   3.14938  2.63373  3.19519  0.16919     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     35   3.50187  0.12230  3.54836  2.87879     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     36   2.98879  3.64807  0.11077  3.55908     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     37   0.13425  3.44005  2.84062  3.34744     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     38   3.14938  2.63373  3.19519  0.16919     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     39   2.98879  3.64807  0.11077  3.55908     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     40   0.13425  3.44005  2.84062  3.34744     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     41   0.13425  3.44005  2.84062  3.34744     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     42   0.19556  3.22260  2.37017  3.11653     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     43   0.13425  3.44005  2.84062  3.34744     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     44   0.13425  3.44005  2.84062  3.34744     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03562  4.04577  4.04577  1.46634  0.26236  1.09861  0.40547
     45   3.50187  0.12230  3.54836  2.87879     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01797  4.02812        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_foure_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:42 2012
NSEQ  2
EFFN  2.000000
CKSUM 2649644998
STATS LOCAL MSV       -7.3985  0.72830
STATS LOCAL VITERBI   -8.4341  0.72830
STATS LOCAL FORWARD   -3.3435  0.72830
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23428  1.58647  1.42785  1.32997
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:47 2012
NSEQ  3
EFFN  3.000000
CKSUM 1198425551
STATS LOCAL MSV       -8.1155  0.72049
STATS LOCAL VITERBI   -8.0778  0.72049
STATS LOCAL FORWARD   -4.1553  0.72049
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46416  1.79106  1.19266  1.20888
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.97980  2.52563  3.03204  0.19727     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.97980  2.52563  3.03204  0.19727     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:51 2012
NSEQ  5
EFFN  3.334961
CKSUM 284011394
STATS LOCAL MSV       -8.1464  0.71932
STATS LOCAL VITERBI   -7.7199  0.71932
STATS LOCAL FORWARD   -4.2570  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39548  1.58131  1.18843  1.41931
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
      1   3.43763  0.12967  3.48690  2.83229      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      2   0.14138  3.38419  2.80447  3.28622      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      3   0.14138  3.38419  2.80447  3.28622      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      4   2.95026  3.59174  0.11672  3.49682      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      5   3.09257  2.59766  3.14057  0.17804      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      6   3.09257  2.59766  3.14057  0.17804      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      7   0.14138  3.38419  2.80447  3.28622      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      8   3.09257  2.59766  3.14057  0.17804      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      9   2.95026  3.59174  0.11672  3.49682      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     10   3.09257  2.59766  3.14057  0.17804     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     11   3.43763  0.12967  3.48690  2.83229     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     12   2.95026  3.59174  0.11672  3.49682     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     13   2.95026  3.59174  0.11672  3.49682     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     14   2.43516  0.73703  2.50766  1.04291     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     15   2.95026  3.59174  0.11672  3.49682     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     16   0.14138  3.38419  2.80447  3.28622     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     17   0.14138  3.38419  2.80447  3.28622     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     18   3.09257  2.59766  3.14057  0.17804     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     19   3.43763  0.12967  3.48690  2.83229     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     20   0.14138  3.38419  2.80447  3.28622     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     21   3.43763  0.12967  3.48690  2.83229     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     22   3.09257  2.59766  3.14057  0.17804     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     23   3.09257  2.59766  3.14057  0.17804     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     24   2.95026  3.59174  0.11672  3.49682     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     25   2.95026  3.59174  0.11672  3.49682     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     26   3.43763  0.12967  3.48690  2.83229     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     27   3.09257  2.59766  3.14057  0.17804     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     28   3.43763  0.12967  3.48690  2.83229     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     29   2.95026  3.59174  0.11672  3.49682     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     30   3.09257  2.59766  3.14057  0.17804     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     31   2.95026  3.59174  0.11672  3.49682     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     32   2.95026  3.59174  0.11672  3.49682     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     33   2.95026  3.59174  0.11672  3.49682     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     34   3.09257  2.59766  3.14057  0.17804     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     35   3.43763  0.12967  3.48690  2.83229     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     36   2.95026  3.59174  0.11672  3.49682     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     37   0.14138  3.38419  2.80447  3.28622     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     38   3.09257  2.59766  3.14057  0.17804     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     39   2.95026  3.59174  0.11672  3.49682     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     40   0.14138  3.38419  2.80447  3.28622     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     41   0.14138  3.38419  2.80447  3.28622     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     42   2.95026  3.59174  0.11672  3.49682     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     43   0.14138  3.38419  2.80447  3.28622     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     44   0.14138  3.38419  2.80447  3.28622     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     45   3.43763  0.12967  3.48690  2.83229     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:19:56 2012
NSEQ  4
EFFN  3.535156
CKSUM 2684874225
STATS LOCAL MSV       -7.5664  0.71933
STATS LOCAL VITERBI   -7.8243  0.71933
STATS LOCAL FORWARD   -4.2092  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34147  1.61360  1.27975  1.34223
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  0.00000        *
      1   0.96697  2.16989  2.18618  0.93335      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      2   0.13352  3.44594  2.84442  3.35389      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      3   0.13352  3.44594  2.84442  3.35389      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      4   2.99280  3.65396  0.11017  3.56561      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      5   3.15540  2.63755  3.20098  0.16828      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      6   3.15540  2.63755  3.20098  0.16828      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      7   0.85306  2.55020  0.90229  2.40593      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      8   3.50862  0.12155  3.55481  2.88365      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
      9   3.15540  2.63755  3.20098  0.16828      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     10   3.15540  2.63755  3.20098  0.16828     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     11   3.50862  0.12155  3.55481  2.88365     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     12   2.99280  3.65396  0.11017  3.56561     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     13   2.99280  3.65396  0.11017  3.56561     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     14   3.15540  2.63755  3.20098  0.16828     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     15   2.99280  3.65396  0.11017  3.56561     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     16   2.99280  3.65396  0.11017  3.56561     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     17   0.13352  3.44594  2.84442  3.35389     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     18   3.15540  2.63755  3.20098  0.16828     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     19   3.50862  0.12155  3.55481  2.88365     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     20   0.13352  3.44594  2.84442  3.35389     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     21   3.50862  0.12155  3.55481  2.88365     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     22   3.15540  2.63755  3.20098  0.16828     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     23   3.15540  2.63755  3.20098  0.16828     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     24   2.99280  3.65396  0.11017  3.56561     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     25   2.99280  3.65396  0.11017  3.56561     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     26   3.15540  2.63755  3.20098  0.16828     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     27   3.15540  2.63755  3.20098  0.16828     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     28   3.50862  0.12155  3.55481  2.88365     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     29   0.13352  3.44594  2.84442  3.35389     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     30   3.50862  0.12155  3.55481  2.88365     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     31   2.99280  3.65396  0.11017  3.56561     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     32   2.99280  3.65396  0.11017  3.56561     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     33   2.99280  3.65396  0.11017  3.56561     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     34   3.15540  2.63755  3.20098  0.16828     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     35   3.50862  0.12155  3.55481  2.88365     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     36   2.99280  3.65396  0.11017  3.56561     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     37   0.13352  3.44594  2.84442  3.35389     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     38   3.15540  2.63755  3.20098  0.16828     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     39   2.99280  3.65396  0.11017  3.56561     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     40   0.13352  3.44594  2.84442  3.35389     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     41   0.13352  3.44594  2.84442  3.35389     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     42   0.13352  3.44594  2.84442  3.35389     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     43   0.13352  3.44594  2.84442  3.35389     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     44   0.13352  3.44594  2.84442  3.35389     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03550  4.04920  4.04920  1.46634  0.26236  1.09861  0.40547
     45   3.50862  0.12155  3.55481  2.88365     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01791  4.03161        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fouri_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:00 2012
NSEQ  4
EFFN  3.207031
CKSUM 860438363
STATS LOCAL MSV       -8.0999  0.71933
STATS LOCAL VITERBI   -7.9356  0.71933
STATS LOCAL FORWARD   -4.2503  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39743  1.54380  1.19256  1.44495
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  0.00000        *
      1   0.14698  3.34251  2.77733  3.24063      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      2   0.14698  3.34251  2.77733  3.24063      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      3   0.14698  3.34251  2.77733  3.24063      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      4   2.92101  3.54931  0.12145  3.45003      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      5   3.05066  2.57097  3.10026  0.18492      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      6   3.05066  2.57097  3.10026  0.18492      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      7   2.92101  3.54931  0.12145  3.45003      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      8   3.38956  0.13553  3.44084  2.79718      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
      9   3.05066  2.57097  3.10026  0.18492      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     10   3.05066  2.57097  3.10026  0.18492     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     11   3.38956  0.13553  3.44084  2.79718     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     12   2.92101  3.54931  0.12145  3.45003     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     13   2.92101  3.54931  0.12145  3.45003     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     14   3.05066  2.57097  3.10026  0.18492     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     15   2.92101  3.54931  0.12145  3.45003     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     16   2.92101  3.54931  0.12145  3.45003     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     17   0.14698  3.34251  2.77733  3.24063     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     18   3.05066  2.57097  3.10026  0.18492     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     19   3.38956  0.13553  3.44084  2.79718     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     20   0.14698  3.34251  2.77733  3.24063     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     21   3.38956  0.13553  3.44084  2.79718     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     22   3.05066  2.57097  3.10026  0.18492     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     23   3.38956  0.13553  3.44084  2.79718     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     24   2.92101  3.54931  0.12145  3.45003     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     25   2.92101  3.54931  0.12145  3.45003     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     26   3.05066  2.57097  3.10026  0.18492     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     27   3.05066  2.57097  3.10026  0.18492     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     28   3.38956  0.13553  3.44084  2.79718     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     29   2.92101  3.54931  0.12145  3.45003     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     30   3.38956  0.13553  3.44084  2.79718     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     31   2.92101  3.54931  0.12145  3.45003     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     32   2.92101  3.54931  0.12145  3.45003     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     33   2.92101  3.54931  0.12145  3.45003     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     34   3.05066  2.57097  3.10026  0.18492     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     35   3.38956  0.13553  3.44084  2.79718     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     36   2.92101  3.54931  0.12145  3.45003     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     37   0.14698  3.34251  2.77733  3.24063     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     38   3.05066  2.57097  3.10026  0.18492     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     39   2.92101  3.54931  0.12145  3.45003     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     40   0.14698  3.34251  2.77733  3.24063     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     41   0.14698  3.34251  2.77733  3.24063     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     42   0.14698  3.34251  2.77733  3.24063     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     43   0.14698  3.34251  2.77733  3.24063     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     44   0.14698  3.34251  2.77733  3.24063     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03769  3.99029  3.99029  1.46634  0.26236  1.09861  0.40547
     45   3.38956  0.13553  3.44084  2.79718     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01902  3.97162        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:06 2012
NSEQ  17
EFFN  3.266357
CKSUM 4174304823
STATS LOCAL MSV       -8.1085  0.71932
STATS LOCAL VITERBI   -7.9322  0.71932
STATS LOCAL FORWARD   -3.9676  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34496  1.46661  1.24888  1.50544
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  0.00000        *
      1   0.32672  2.69881  2.46028  2.07132      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      2   0.14432  3.36206  2.79008  3.26201      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      3   0.14432  3.36206  2.79008  3.26201      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      4   2.93479  3.56925  0.11920  3.47201      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      5   3.07027  2.58347  3.11913  0.18166      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      6   3.07027  2.58347  3.11913  0.18166      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      7   0.14432  3.36206  2.79008  3.26201      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      8   3.41212  0.13274  3.46246  2.81369      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
      9   3.07027  2.58347  3.11913  0.18166      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     10   3.41212  0.13274  3.46246  2.81369     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     11   3.41212  0.13274  3.46246  2.81369     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     12   2.93479  3.56925  0.11920  3.47201     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     13   2.93479  3.56925  0.11920  3.47201     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     14   3.07027  2.58347  3.11913  0.18166     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     15   2.93479  3.56925  0.11920  3.47201     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     16   2.93479  3.56925  0.11920  3.47201     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     17   0.14432  3.36206  2.79008  3.26201     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     18   3.07027  2.58347  3.11913  0.18166     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     19   3.41212  0.13274  3.46246  2.81369     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     20   0.14432  3.36206  2.79008  3.26201     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     21   3.41212  0.13274  3.46246  2.81369     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     22   3.07027  2.58347  3.11913  0.18166     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     23   3.41212  0.13274  3.46246  2.81369     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     24   2.93479  3.56925  0.11920  3.47201     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     25   2.93479  3.56925  0.11920  3.47201     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     26   3.07027  2.58347  3.11913  0.18166     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     27   3.07027  2.58347  3.11913  0.18166     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     28   3.41212  0.13274  3.46246  2.81369     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     29   2.93479  3.56925  0.11920  3.47201     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     30   3.41212  0.13274  3.46246  2.81369     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     31   2.93479  3.56925  0.11920  3.47201     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     32   2.93479  3.56925  0.11920  3.47201     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     33   2.93479  3.56925  0.11920  3.47201     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     34   3.07027  2.58347  3.11913  0.18166     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     35   3.41212  0.13274  3.46246  2.81369     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     36   2.93479  3.56925  0.11920  3.47201     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     37   0.14432  3.36206  2.79008  3.26201     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     38   3.07027  2.58347  3.11913  0.18166     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     39   2.93479  3.56925  0.11920  3.47201     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     40   0.14432  3.36206  2.79008  3.26201     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     41   0.14432  3.36206  2.79008  3.26201     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     42   0.14432  3.36206  2.79008  3.26201     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     43   0.14432  3.36206  2.79008  3.26201     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     44   0.14432  3.36206  2.79008  3.26201     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00120  4.00120  1.46634  0.26236  1.09861  0.40547
     45   3.41212  0.13274  3.46246  2.81369     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98273        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourk_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:12 2012
NSEQ  2
EFFN  2.000000
CKSUM 230231236
STATS LOCAL MSV       -7.4638  0.72773
STATS LOCAL VITERBI   -8.4182  0.72773
STATS LOCAL FORWARD   -3.5515  0.72773
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39335  1.53233  1.20977  1.43776
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.57915  2.25909  2.64442  0.28946     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourl_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:17 2012
NSEQ  18
EFFN  3.730957
CKSUM 2863177216
STATS LOCAL MSV       -7.0840  0.71932
STATS LOCAL VITERBI   -7.7169  0.71932
STATS LOCAL FORWARD   -4.0032  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.42749  1.45323  1.23415  1.44734
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  0.00000        *
      1   2.80260  1.78176  2.86243  0.33705      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      2   0.12676  3.50250  2.88081  3.41598      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      3   0.12676  3.50250  2.88081  3.41598      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      4   3.03100  3.71027  0.10459  3.62800      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      5   3.21376  2.67455  3.25706  0.15975      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      6   3.21376  2.67455  3.25706  0.15975      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      7   0.12676  3.50250  2.88081  3.41598      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      8   3.57332  0.11466  3.61663  2.93001      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
      9   3.21376  2.67455  3.25706  0.15975      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     10   3.57332  0.11466  3.61663  2.93001     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     11   3.57332  0.11466  3.61663  2.93001     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     12   3.03100  3.71027  0.10459  3.62800     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     13   3.03100  3.71027  0.10459  3.62800     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     14   3.21376  2.67455  3.25706  0.15975     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     15   3.03100  3.71027  0.10459  3.62800     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     16   3.03100  3.71027  0.10459  3.62800     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     17   0.12676  3.50250  2.88081  3.41598     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     18   2.90492  1.97839  2.96091  0.28080     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     19   3.57332  0.11466  3.61663  2.93001     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     20   0.12676  3.50250  2.88081  3.41598     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     21   3.57332  0.11466  3.61663  2.93001     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     22   3.21376  2.67455  3.25706  0.15975     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     23   2.90492  1.97839  2.96091  0.28080     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     24   3.03100  3.71027  0.10459  3.62800     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     25   3.03100  3.71027  0.10459  3.62800     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     26   3.07718  0.24256  3.13733  2.07228     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     27   3.21376  2.67455  3.25706  0.15975     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     28   3.27023  0.18298  3.32440  2.37277     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     29   1.95975  3.10588  0.26960  2.98307     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     30   3.57332  0.11466  3.61663  2.93001     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     31   3.03100  3.71027  0.10459  3.62800     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     32   3.03100  3.71027  0.10459  3.62800     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     33   2.76500  3.19127  0.19589  2.60634     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     34   3.21376  2.67455  3.25706  0.15975     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     35   3.57332  0.11466  3.61663  2.93001     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     36   3.03100  3.71027  0.10459  3.62800     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     37   0.12676  3.50250  2.88081  3.41598     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     38   3.21376  2.67455  3.25706  0.15975     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     39   3.03100  3.71027  0.10459  3.62800     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     40   0.12676  3.50250  2.88081  3.41598     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     41   0.12676  3.50250  2.88081  3.41598     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     42   0.90738  2.58515  0.83466  2.44170     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     43   0.12676  3.50250  2.88081  3.41598     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     44   0.12676  3.50250  2.88081  3.41598     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03430  4.08277  4.08277  1.46634  0.26236  1.09861  0.40547
     45   3.57332  0.11466  3.61663  2.93001     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01730  4.06577        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourm_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:22 2012
NSEQ  9
EFFN  3.555176
CKSUM 2524060174
STATS LOCAL MSV       -7.4231  0.71932
STATS LOCAL VITERBI   -7.5972  0.71932
STATS LOCAL FORWARD   -4.3998  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28371  1.60225  1.29933  1.39096
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  0.00000        *
      1   1.07668  2.16651  2.20381  0.83398      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      2   0.92278  1.50243  2.05951  1.37641      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      3   0.13279  3.45189  2.84825  3.36042      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      4   2.99686  3.65992  0.10956  3.57220      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      5   3.51544  0.12080  3.56134  2.88856      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      6   3.16150  2.64143  3.20685  0.16736      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      7   0.13279  3.45189  2.84825  3.36042      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      8   3.16150  2.64143  3.20685  0.16736      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      9   0.13279  3.45189  2.84825  3.36042      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     10   3.16150  2.64143  3.20685  0.16736     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     11   3.51544  0.12080  3.56134  2.88856     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     12   2.99686  3.65992  0.10956  3.57220     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     13   2.99686  3.65992  0.10956  3.57220     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     14   3.16150  2.64143  3.20685  0.16736     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     15   2.99686  3.65992  0.10956  3.57220     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     16   2.99686  3.65992  0.10956  3.57220     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     17   0.13279  3.45189  2.84825  3.36042     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     18   3.16150  2.64143  3.20685  0.16736     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     19   3.51544  0.12080  3.56134  2.88856     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     20   0.13279  3.45189  2.84825  3.36042     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     21   3.51544  0.12080  3.56134  2.88856     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     22   3.16150  2.64143  3.20685  0.16736     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     23   3.16150  2.64143  3.20685  0.16736     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     24   2.99686  3.65992  0.10956  3.57220     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     25   2.99686  3.65992  0.10956  3.57220     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     26   3.51544  0.12080  3.56134  2.88856     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     27   3.16150  2.64143  3.20685  0.16736     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     28   3.51544  0.12080  3.56134  2.88856     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     29   2.99686  3.65992  0.10956  3.57220     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     30   3.16150  2.64143  3.20685  0.16736     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     31   0.13279  3.45189  2.84825  3.36042     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     32   2.99686  3.65992  0.10956  3.57220     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     33   0.13279  3.45189  2.84825  3.36042     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     34   3.16150  2.64143  3.20685  0.16736     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     35   3.51544  0.12080  3.56134  2.88856     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     36   2.99686  3.65992  0.10956  3.57220     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     37   0.13279  3.45189  2.84825  3.36042     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     38   3.16150  2.64143  3.20685  0.16736     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     39   2.99686  3.65992  0.10956  3.57220     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     40   0.13279  3.45189  2.84825  3.36042     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     41   0.13279  3.45189  2.84825  3.36042     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     42   2.99686  3.65992  0.10956  3.57220     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     43   0.13279  3.45189  2.84825  3.36042     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     44   0.13279  3.45189  2.84825  3.36042     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     45   3.51544  0.12080  3.56134  2.88856     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01784  4.03516        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:54 2012
NSEQ  4
EFFN  3.199219
CKSUM 535846906
STATS LOCAL MSV       -8.1777  0.71932
STATS LOCAL VITERBI   -7.7998  0.71932
STATS LOCAL FORWARD   -4.0096  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33545  1.46596  1.25158  1.51390
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
      1   3.38655  0.13590  3.43796  2.79498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      2   0.14734  3.33991  2.77563  3.23778      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      3   0.14734  3.33991  2.77563  3.23778      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      4   3.38655  0.13590  3.43796  2.79498      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      5   0.14734  3.33991  2.77563  3.23778      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      6   3.38655  0.13590  3.43796  2.79498      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      7   3.04806  2.56931  3.09775  0.18535      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      8   3.04806  2.56931  3.09775  0.18535      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      9   3.04806  2.56931  3.09775  0.18535      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     10   0.14734  3.33991  2.77563  3.23778     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     11   3.38655  0.13590  3.43796  2.79498     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     12   0.14734  3.33991  2.77563  3.23778     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     13   2.91917  3.54665  0.12176  3.44709     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     14   3.04806  2.56931  3.09775  0.18535     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     15   2.91917  3.54665  0.12176  3.44709     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     16   2.91917  3.54665  0.12176  3.44709     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     17   0.14734  3.33991  2.77563  3.23778     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     18   3.04806  2.56931  3.09775  0.18535     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     19   3.38655  0.13590  3.43796  2.79498     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     20   0.14734  3.33991  2.77563  3.23778     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     21   3.38655  0.13590  3.43796  2.79498     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     22   3.04806  2.56931  3.09775  0.18535     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     23   3.04806  2.56931  3.09775  0.18535     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     24   2.91917  3.54665  0.12176  3.44709     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     25   2.91917  3.54665  0.12176  3.44709     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     26   3.38655  0.13590  3.43796  2.79498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     27   3.04806  2.56931  3.09775  0.18535     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     28   3.38655  0.13590  3.43796  2.79498     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     29   2.91917  3.54665  0.12176  3.44709     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     30   2.91917  3.54665  0.12176  3.44709     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     31   2.91917  3.54665  0.12176  3.44709     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     32   2.91917  3.54665  0.12176  3.44709     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     33   2.91917  3.54665  0.12176  3.44709     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     34   3.04806  2.56931  3.09775  0.18535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     35   3.38655  0.13590  3.43796  2.79498     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     36   2.91917  3.54665  0.12176  3.44709     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     37   0.14734  3.33991  2.77563  3.23778     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     38   3.04806  2.56931  3.09775  0.18535     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     39   2.91917  3.54665  0.12176  3.44709     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     40   0.14734  3.33991  2.77563  3.23778     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     41   0.14734  3.33991  2.77563  3.23778     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     42   2.91917  3.54665  0.12176  3.44709     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     43   0.14734  3.33991  2.77563  3.23778     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     44   0.14734  3.33991  2.77563  3.23778     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     45   3.38655  0.13590  3.43796  2.79498     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:01 2012
NSEQ  23
EFFN  3.501099
CKSUM 1811260558
STATS LOCAL MSV       -7.4154  0.71931
STATS LOCAL VITERBI   -7.7564  0.71931
STATS LOCAL FORWARD   -4.2320  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31292  1.46337  1.22855  1.57601
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  0.00000        *
      1   0.45522  2.71836  1.49555  2.58254      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      2   0.27722  2.84765  2.55637  2.23921      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      3   0.13479  3.43572  2.83783  3.34269      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      4   3.14494  2.63092  3.19093  0.16986      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      5   3.49690  0.12285  3.54360  2.87520      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      6   3.49690  0.12285  3.54360  2.87520      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      7   3.14494  2.63092  3.19093  0.16986      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      8   0.29235  2.97047  1.93614  2.84810      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
      9   0.28945  2.97664  1.94643  2.85464      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     10   0.13479  3.43572  2.83783  3.34269     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     11   3.49690  0.12285  3.54360  2.87520     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     12   2.98583  3.64372  0.11122  3.55427     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     13   2.98583  3.64372  0.11122  3.55427     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     14   3.14494  2.63092  3.19093  0.16986     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     15   2.98583  3.64372  0.11122  3.55427     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     16   2.98583  3.64372  0.11122  3.55427     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     17   0.13479  3.43572  2.83783  3.34269     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     18   3.14494  2.63092  3.19093  0.16986     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     19   3.49690  0.12285  3.54360  2.87520     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     20   0.13479  3.43572  2.83783  3.34269     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     21   3.49690  0.12285  3.54360  2.87520     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     22   3.14494  2.63092  3.19093  0.16986     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     23   3.49690  0.12285  3.54360  2.87520     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     24   2.98583  3.64372  0.11122  3.55427     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     25   2.98583  3.64372  0.11122  3.55427     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     26   3.49690  0.12285  3.54360  2.87520     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     27   3.14494  2.63092  3.19093  0.16986     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     28   3.49690  0.12285  3.54360  2.87520     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     29   2.98583  3.64372  0.11122  3.55427     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     30   3.14494  2.63092  3.19093  0.16986     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     31   2.98583  3.64372  0.11122  3.55427     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     32   2.98583  3.64372  0.11122  3.55427     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     33   0.13479  3.43572  2.83783  3.34269     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     34   3.14494  2.63092  3.19093  0.16986     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     35   3.49690  0.12285  3.54360  2.87520     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     36   2.98583  3.64372  0.11122  3.55427     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     37   0.13479  3.43572  2.83783  3.34269     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     38   3.14494  2.63092  3.19093  0.16986     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     39   2.98583  3.64372  0.11122  3.55427     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     40   0.13479  3.43572  2.83783  3.34269     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     41   0.13479  3.43572  2.83783  3.34269     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     42   2.98583  3.64372  0.11122  3.55427     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     43   2.34521  3.30668  0.19044  3.19570     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     44   0.13479  3.43572  2.83783  3.34269     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03571  4.04324  4.04324  1.46634  0.26236  1.09861  0.40547
     45   3.49690  0.12285  3.54360  2.87520     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01801  4.02555        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_nineteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:00 2012
NSEQ  2
EFFN  2.000000
CKSUM 209311102
STATS LOCAL MSV       -7.6229  0.72769
STATS LOCAL VITERBI   -8.1432  0.72769
STATS LOCAL FORWARD   -3.4224  0.72769
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39541  1.40602  1.26392  1.49340
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:11:25 2012
NSEQ  2
EFFN  2.000000
CKSUM 3686762380
STATS LOCAL MSV       -7.5082  0.72766
STATS LOCAL VITERBI   -8.2855  0.72766
STATS LOCAL FORWARD   -3.8286  0.72766
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.58214  1.52906  1.11769  1.38354
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.57915  2.25909  2.64442  0.28946     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:11:33 2012
NSEQ  87
EFFN  3.655975
CKSUM 3510333141
STATS LOCAL MSV       -7.4198  0.71932
STATS LOCAL VITERBI   -7.6938  0.71932
STATS LOCAL FORWARD   -4.3590  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54954  1.45282  1.13873  1.45449
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  0.00000        *
      1   3.54908  0.11719  3.59347  2.91269      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      2   0.12925  3.48127  2.86717  3.39267      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      3   0.12925  3.48127  2.86717  3.39267      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      4   3.54908  0.11719  3.59347  2.91269      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      5   3.19176  2.66061  3.23592  0.16291      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      6   2.47923  0.76813  2.55103  0.98267      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      7   3.19176  2.66061  3.23592  0.16291      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      8   2.07585  3.16738  0.24209  3.04801      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
      9   0.36015  2.66492  2.46116  1.91401      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     10   2.57159  3.47632  0.15254  3.37730     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     11   3.54908  0.11719  3.59347  2.91269     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     12   3.01675  3.68922  0.10664  3.60465     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     13   3.01675  3.68922  0.10664  3.60465     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     14   3.19176  2.66061  3.23592  0.16291     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     15   3.01675  3.68922  0.10664  3.60465     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     16   3.01675  3.68922  0.10664  3.60465     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     17   0.12925  3.48127  2.86717  3.39267     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     18   3.19176  2.66061  3.23592  0.16291     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     19   3.54908  0.11719  3.59347  2.91269     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     20   0.12925  3.48127  2.86717  3.39267     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     21   3.54908  0.11719  3.59347  2.91269     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     22   3.19176  2.66061  3.23592  0.16291     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     23   3.54908  0.11719  3.59347  2.91269     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     24   3.01675  3.68922  0.10664  3.60465     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     25   3.01675  3.68922  0.10664  3.60465     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     26   3.54908  0.11719  3.59347  2.91269     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     27   3.19176  2.66061  3.23592  0.16291     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     28   3.54908  0.11719  3.59347  2.91269     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     29   3.01675  3.68922  0.10664  3.60465     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     30   3.19176  2.66061  3.23592  0.16291     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     31   3.01675  3.68922  0.10664  3.60465     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     32   2.93056  2.06431  2.98531  0.26240     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     33   3.01675  3.68922  0.10664  3.60465     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     34   3.19176  2.66061  3.23592  0.16291     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     35   3.54908  0.11719  3.59347  2.91269     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     36   3.01675  3.68922  0.10664  3.60465     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     37   0.12925  3.48127  2.86717  3.39267     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     38   3.19176  2.66061  3.23592  0.16291     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     39   3.01675  3.68922  0.10664  3.60465     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     40   0.12925  3.48127  2.86717  3.39267     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     41   0.12925  3.48127  2.86717  3.39267     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     42   3.01675  3.68922  0.10664  3.60465     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     43   0.12925  3.48127  2.86717  3.39267     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     44   3.01675  3.68922  0.10664  3.60465     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03475  4.07005  4.07005  1.46634  0.26236  1.09861  0.40547
     45   2.51322  0.66750  2.58481  1.10686     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01753  4.05282        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:11:44 2012
NSEQ  10
EFFN  3.227539
CKSUM 1757016814
STATS LOCAL MSV       -7.9412  0.71930
STATS LOCAL VITERBI   -7.6707  0.71930
STATS LOCAL FORWARD   -4.0766  0.71930
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40323  1.39009  1.31591  1.44005
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  0.00000        *
      1   3.39741  0.13455  3.44837  2.80294      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      2   0.14605  3.34931  2.78177  3.24806      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      3   0.14605  3.34931  2.78177  3.24806      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      4   3.39741  0.13455  3.44837  2.80294      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      5   3.05748  2.57532  3.10682  0.18378      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      6   3.39741  0.13455  3.44837  2.80294      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      7   3.39741  0.13455  3.44837  2.80294      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      8   0.14605  3.34931  2.78177  3.24806      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
      9   3.05748  2.57532  3.10682  0.18378      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     10   2.92582  3.55626  0.12066  3.45768     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     11   3.05748  2.57532  3.10682  0.18378     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     12   2.92582  3.55626  0.12066  3.45768     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     13   2.92582  3.55626  0.12066  3.45768     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     14   3.05748  2.57532  3.10682  0.18378     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     15   2.92582  3.55626  0.12066  3.45768     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     16   2.92582  3.55626  0.12066  3.45768     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     17   0.14605  3.34931  2.78177  3.24806     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     18   3.05748  2.57532  3.10682  0.18378     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     19   3.39741  0.13455  3.44837  2.80294     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     20   0.14605  3.34931  2.78177  3.24806     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     21   3.39741  0.13455  3.44837  2.80294     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     22   3.05748  2.57532  3.10682  0.18378     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     23   3.39741  0.13455  3.44837  2.80294     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     24   2.92582  3.55626  0.12066  3.45768     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     25   2.92582  3.55626  0.12066  3.45768     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     26   3.39741  0.13455  3.44837  2.80294     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     27   3.05748  2.57532  3.10682  0.18378     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     28   3.39741  0.13455  3.44837  2.80294     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     29   0.14605  3.34931  2.78177  3.24806     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     30   3.39741  0.13455  3.44837  2.80294     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     31   2.92582  3.55626  0.12066  3.45768     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     32   3.05748  2.57532  3.10682  0.18378     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     33   0.14605  3.34931  2.78177  3.24806     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     34   3.05748  2.57532  3.10682  0.18378     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     35   3.39741  0.13455  3.44837  2.80294     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     36   2.92582  3.55626  0.12066  3.45768     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     37   0.14605  3.34931  2.78177  3.24806     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     38   3.05748  2.57532  3.10682  0.18378     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     39   2.92582  3.55626  0.12066  3.45768     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     40   0.14605  3.34931  2.78177  3.24806     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     41   0.14605  3.34931  2.78177  3.24806     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     42   2.92582  3.55626  0.12066  3.45768     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     43   0.14605  3.34931  2.78177  3.24806     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     44   2.92582  3.55626  0.12066  3.45768     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99407  3.99407  1.46634  0.26236  1.09861  0.40547
     45   3.05748  2.57532  3.10682  0.18378     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01895  3.97547        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:11:50 2012
NSEQ  17
EFFN  3.291260
CKSUM 196763882
STATS LOCAL MSV       -8.0536  0.71933
STATS LOCAL VITERBI   -7.7352  0.71933
STATS LOCAL FORWARD   -3.8207  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.38860  1.39070  1.27186  1.50794
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  0.00000        *
      1   3.42145  0.13161  3.47140  2.82050      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      2   0.14324  3.37015  2.79535  3.27086      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      3   0.14324  3.37015  2.79535  3.27086      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      4   3.42145  0.13161  3.47140  2.82050      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      5   3.07841  2.58865  3.12696  0.18033      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      6   3.42145  0.13161  3.47140  2.82050      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      7   3.42145  0.13161  3.47140  2.82050      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      8   0.14324  3.37015  2.79535  3.27086      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
      9   3.07841  2.58865  3.12696  0.18033      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     10   2.94046  3.57748  0.11829  3.48109     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     11   3.07841  2.58865  3.12696  0.18033     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     12   2.94046  3.57748  0.11829  3.48109     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     13   2.94046  3.57748  0.11829  3.48109     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     14   3.07841  2.58865  3.12696  0.18033     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     15   2.94046  3.57748  0.11829  3.48109     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     16   2.94046  3.57748  0.11829  3.48109     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     17   0.14324  3.37015  2.79535  3.27086     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     18   3.07841  2.58865  3.12696  0.18033     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     19   3.42145  0.13161  3.47140  2.82050     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     20   0.14324  3.37015  2.79535  3.27086     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     21   3.42145  0.13161  3.47140  2.82050     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     22   3.07841  2.58865  3.12696  0.18033     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     23   3.42145  0.13161  3.47140  2.82050     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     24   2.94046  3.57748  0.11829  3.48109     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     25   2.94046  3.57748  0.11829  3.48109     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     26   3.42145  0.13161  3.47140  2.82050     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     27   3.07841  2.58865  3.12696  0.18033     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     28   3.42145  0.13161  3.47140  2.82050     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     29   0.14324  3.37015  2.79535  3.27086     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     30   3.42145  0.13161  3.47140  2.82050     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     31   2.94046  3.57748  0.11829  3.48109     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     32   3.07841  2.58865  3.12696  0.18033     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     33   1.49206  2.71976  0.45663  2.57989     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     34   0.14324  3.37015  2.79535  3.27086     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     35   3.42145  0.13161  3.47140  2.82050     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     36   2.94046  3.57748  0.11829  3.48109     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     37   0.14324  3.37015  2.79535  3.27086     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     38   3.07841  2.58865  3.12696  0.18033     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     39   2.94046  3.57748  0.11829  3.48109     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     40   0.14324  3.37015  2.79535  3.27086     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     41   0.14324  3.37015  2.79535  3.27086     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     42   2.94046  3.57748  0.11829  3.48109     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     43   0.14324  3.37015  2.79535  3.27086     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     44   2.94046  3.57748  0.11829  3.48109     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03710  4.00574  4.00574  1.46634  0.26236  1.09861  0.40547
     45   3.07841  2.58865  3.12696  0.18033     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98736        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:11:59 2012
NSEQ  34
EFFN  3.482178
CKSUM 4148185765
STATS LOCAL MSV       -7.2926  0.71932
STATS LOCAL VITERBI   -7.6395  0.71932
STATS LOCAL FORWARD   -4.1414  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39466  1.43022  1.30565  1.41953
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  0.00000        *
      1   3.22523  0.18506  3.28084  2.39033      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      2   0.13550  3.42999  2.83413  3.33641      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      3   0.13550  3.42999  2.83413  3.33641      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      4   3.49032  0.12359  3.53732  2.87046      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      5   3.13909  2.62721  3.18530  0.17075      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      6   2.40864  0.46941  2.12525  1.80006      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      7   2.74277  0.38496  2.81075  1.63490      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      8   0.13550  3.42999  2.83413  3.33641      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
      9   3.13909  2.62721  3.18530  0.17075      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     10   2.98191  3.63797  0.11181  3.54791     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     11   3.13909  2.62721  3.18530  0.17075     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     12   2.98191  3.63797  0.11181  3.54791     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     13   2.98191  3.63797  0.11181  3.54791     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     14   3.13909  2.62721  3.18530  0.17075     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     15   2.98191  3.63797  0.11181  3.54791     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     16   2.98191  3.63797  0.11181  3.54791     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     17   0.13550  3.42999  2.83413  3.33641     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     18   3.13909  2.62721  3.18530  0.17075     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     19   3.49032  0.12359  3.53732  2.87046     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     20   0.13550  3.42999  2.83413  3.33641     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     21   3.49032  0.12359  3.53732  2.87046     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     22   3.13909  2.62721  3.18530  0.17075     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     23   3.49032  0.12359  3.53732  2.87046     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     24   2.98191  3.63797  0.11181  3.54791     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     25   2.98191  3.63797  0.11181  3.54791     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     26   3.49032  0.12359  3.53732  2.87046     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     27   3.13909  2.62721  3.18530  0.17075     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     28   3.49032  0.12359  3.53732  2.87046     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     29   0.13550  3.42999  2.83413  3.33641     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     30   3.49032  0.12359  3.53732  2.87046     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     31   2.98191  3.63797  0.11181  3.54791     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     32   2.96850  2.22834  3.02126  0.23298     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     33   0.13550  3.42999  2.83413  3.33641     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     34   3.13909  2.62721  3.18530  0.17075     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     35   3.49032  0.12359  3.53732  2.87046     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     36   2.98191  3.63797  0.11181  3.54791     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     37   0.13550  3.42999  2.83413  3.33641     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     38   3.13909  2.62721  3.18530  0.17075     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     39   2.98191  3.63797  0.11181  3.54791     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     40   0.13550  3.42999  2.83413  3.33641     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     41   0.13550  3.42999  2.83413  3.33641     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     42   2.98191  3.63797  0.11181  3.54791     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     43   0.13550  3.42999  2.83413  3.33641     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     44   2.98191  3.63797  0.11181  3.54791     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03583  4.03992  4.03992  1.46634  0.26236  1.09861  0.40547
     45   3.13909  2.62721  3.18530  0.17075     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01808  4.02216        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:05 2012
NSEQ  2
EFFN  2.000000
CKSUM 2429089339
STATS LOCAL MSV       -7.4875  0.72740
STATS LOCAL VITERBI   -8.1144  0.72740
STATS LOCAL FORWARD   -3.7271  0.72740
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.51972  1.35153  1.16664  1.55604
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oneg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:20 2012
NSEQ  3
EFFN  3.000000
CKSUM 3162836829
STATS LOCAL MSV       -8.0248  0.72040
STATS LOCAL VITERBI   -7.6955  0.72040
STATS LOCAL FORWARD   -4.0851  0.72040
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22259  1.32320  1.60338  1.43533
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.97980  2.52563  3.03204  0.19727      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oneh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:26 2012
NSEQ  68
EFFN  3.332764
CKSUM 148303286
STATS LOCAL MSV       -8.0502  0.71933
STATS LOCAL VITERBI   -7.6972  0.71933
STATS LOCAL FORWARD   -4.3500  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47373  1.32059  1.25656  1.51722
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  0.00000        *
      1   3.43682  0.12977  3.48612  2.83170      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      2   0.14147  3.38348  2.80402  3.28545      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      3   0.14147  3.38348  2.80402  3.28545      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      4   3.43682  0.12977  3.48612  2.83170      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      5   3.09186  2.59721  3.13989  0.17815      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      6   3.43682  0.12977  3.48612  2.83170      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      7   2.94039  2.24572  2.99390  0.23419      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      8   2.69542  2.43082  2.35634  0.28801      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
      9   0.14147  3.38348  2.80402  3.28545      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     10   2.94977  3.59102  0.11680  3.49603     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     11   3.43682  0.12977  3.48612  2.83170     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     12   2.94977  3.59102  0.11680  3.49603     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     13   2.94977  3.59102  0.11680  3.49603     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     14   3.09186  2.59721  3.13989  0.17815     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     15   2.94977  3.59102  0.11680  3.49603     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     16   2.94977  3.59102  0.11680  3.49603     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     17   0.14147  3.38348  2.80402  3.28545     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     18   3.09186  2.59721  3.13989  0.17815     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     19   3.43682  0.12977  3.48612  2.83170     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     20   0.14147  3.38348  2.80402  3.28545     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     21   3.43682  0.12977  3.48612  2.83170     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     22   3.09186  2.59721  3.13989  0.17815     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     23   3.43682  0.12977  3.48612  2.83170     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     24   2.94977  3.59102  0.11680  3.49603     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     25   2.94977  3.59102  0.11680  3.49603     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     26   3.43682  0.12977  3.48612  2.83170     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     27   3.09186  2.59721  3.13989  0.17815     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     28   3.43682  0.12977  3.48612  2.83170     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     29   2.94977  3.59102  0.11680  3.49603     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     30   3.09186  2.59721  3.13989  0.17815     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     31   2.94977  3.59102  0.11680  3.49603     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     32   3.43682  0.12977  3.48612  2.83170     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     33   2.54151  3.38452  0.16292  3.27799     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     34   3.09186  2.59721  3.13989  0.17815     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     35   3.43682  0.12977  3.48612  2.83170     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     36   2.94977  3.59102  0.11680  3.49603     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     37   0.14147  3.38348  2.80402  3.28545     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     38   3.09186  2.59721  3.13989  0.17815     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     39   2.71953  3.14925  0.19713  2.65745     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     40   0.14147  3.38348  2.80402  3.28545     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     41   0.14147  3.38348  2.80402  3.28545     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     42   2.94977  3.59102  0.11680  3.49603     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     43   0.14147  3.38348  2.80402  3.28545     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     44   0.20263  3.17160  2.35722  3.06182     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01327  4.01327  1.46634  0.26236  1.09861  0.40547
     45   3.43682  0.12977  3.48612  2.83170     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99503        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:35 2012
NSEQ  10
EFFN  3.247070
CKSUM 3206921348
STATS LOCAL MSV       -8.2213  0.71932
STATS LOCAL VITERBI   -7.8415  0.71932
STATS LOCAL FORWARD   -3.8688  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46632  1.46690  1.10152  1.57880
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
      1   3.40484  0.13363  3.45549  2.80837      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      2   0.14518  3.35575  2.78597  3.25510      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      3   0.14518  3.35575  2.78597  3.25510      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      4   3.40484  0.13363  3.45549  2.80837      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      5   3.06393  2.57943  3.11303  0.18271      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      6   3.40484  0.13363  3.45549  2.80837      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      7   3.06393  2.57943  3.11303  0.18271      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      8   0.14518  3.35575  2.78597  3.25510      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      9   0.14518  3.35575  2.78597  3.25510      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     10   2.93035  3.56282  0.11992  3.46492     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     11   3.06393  2.57943  3.11303  0.18271     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     12   2.93035  3.56282  0.11992  3.46492     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     13   2.93035  3.56282  0.11992  3.46492     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     14   3.06393  2.57943  3.11303  0.18271     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     15   2.93035  3.56282  0.11992  3.46492     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     16   2.93035  3.56282  0.11992  3.46492     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     17   0.14518  3.35575  2.78597  3.25510     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     18   3.06393  2.57943  3.11303  0.18271     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     19   3.40484  0.13363  3.45549  2.80837     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     20   0.14518  3.35575  2.78597  3.25510     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     21   3.40484  0.13363  3.45549  2.80837     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     22   3.06393  2.57943  3.11303  0.18271     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     23   3.40484  0.13363  3.45549  2.80837     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     24   2.93035  3.56282  0.11992  3.46492     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     25   2.93035  3.56282  0.11992  3.46492     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     26   3.40484  0.13363  3.45549  2.80837     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     27   3.06393  2.57943  3.11303  0.18271     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     28   3.40484  0.13363  3.45549  2.80837     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     29   2.93035  3.56282  0.11992  3.46492     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     30   2.32215  2.52809  0.43127  1.75769     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     31   2.93035  3.56282  0.11992  3.46492     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     32   2.93035  3.56282  0.11992  3.46492     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     33   2.93035  3.56282  0.11992  3.46492     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     34   3.06393  2.57943  3.11303  0.18271     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     35   3.40484  0.13363  3.45549  2.80837     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     36   2.93035  3.56282  0.11992  3.46492     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     37   0.14518  3.35575  2.78597  3.25510     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     38   3.06393  2.57943  3.11303  0.18271     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     39   2.93035  3.56282  0.11992  3.46492     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     40   0.14518  3.35575  2.78597  3.25510     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     41   0.14518  3.35575  2.78597  3.25510     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     42   2.93035  3.56282  0.11992  3.46492     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     43   0.14518  3.35575  2.78597  3.25510     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     44   2.93035  3.56282  0.11992  3.46492     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     45   3.40484  0.13363  3.45549  2.80837     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:40 2012
NSEQ  25
EFFN  3.768921
CKSUM 1958450389
STATS LOCAL MSV       -6.8992  0.71931
STATS LOCAL VITERBI   -7.5325  0.71931
STATS LOCAL FORWARD   -4.3956  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.57212  1.38838  1.16636  1.46353
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  0.00000        *
      1   2.48307  0.88584  2.55439  0.85237      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      2   2.50922  1.10611  2.57909  0.66946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      3   0.12554  3.51306  2.88759  3.42758      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      4   3.58536  0.11343  3.62811  2.93859      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      5   3.22473  2.68150  3.26760  0.15820      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      6   3.58536  0.11343  3.62811  2.93859      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      7   3.22473  2.68150  3.26760  0.15820      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      8   0.12554  3.51306  2.88759  3.42758      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
      9   0.60591  2.33919  1.63915  1.80867      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     10   3.03806  3.72071  0.10359  3.63957     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     11   3.58536  0.11343  3.62811  2.93859     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     12   3.03806  3.72071  0.10359  3.63957     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     13   3.03806  3.72071  0.10359  3.63957     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     14   3.22473  2.68150  3.26760  0.15820     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     15   3.03806  3.72071  0.10359  3.63957     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     16   3.03806  3.72071  0.10359  3.63957     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     17   0.12554  3.51306  2.88759  3.42758     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     18   3.22473  2.68150  3.26760  0.15820     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     19   3.58536  0.11343  3.62811  2.93859     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     20   0.12554  3.51306  2.88759  3.42758     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     21   3.58536  0.11343  3.62811  2.93859     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     22   3.22473  2.68150  3.26760  0.15820     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     23   3.58536  0.11343  3.62811  2.93859     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     24   3.03806  3.72071  0.10359  3.63957     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     25   3.03806  3.72071  0.10359  3.63957     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     26   3.58536  0.11343  3.62811  2.93859     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     27   3.22473  2.68150  3.26760  0.15820     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     28   3.58536  0.11343  3.62811  2.93859     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     29   3.03806  3.72071  0.10359  3.63957     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     30   3.22473  2.68150  3.26760  0.15820     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     31   3.03806  3.72071  0.10359  3.63957     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     32   2.06075  1.37151  1.50789  0.92245     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     33   3.03806  3.72071  0.10359  3.63957     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     34   3.22473  2.68150  3.26760  0.15820     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     35   3.58536  0.11343  3.62811  2.93859     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     36   3.03806  3.72071  0.10359  3.63957     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     37   0.12554  3.51306  2.88759  3.42758     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     38   3.22473  2.68150  3.26760  0.15820     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     39   3.03806  3.72071  0.10359  3.63957     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     40   0.12554  3.51306  2.88759  3.42758     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     41   0.12554  3.51306  2.88759  3.42758     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     42   3.03806  3.72071  0.10359  3.63957     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     43   0.12554  3.51306  2.88759  3.42758     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     44   3.03806  3.72071  0.10359  3.63957     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03408  4.08915  4.08915  1.46634  0.26236  1.09861  0.40547
     45   3.58536  0.11343  3.62811  2.93859     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01719  4.07226        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:45 2012
NSEQ  3
EFFN  3.000000
CKSUM 1530221864
STATS LOCAL MSV       -7.9709  0.72006
STATS LOCAL VITERBI   -7.7118  0.72006
STATS LOCAL FORWARD   -4.1068  0.72006
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54975  1.26730  1.25893  1.50439
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.86982  3.47591  0.13017  3.36931     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:49 2012
NSEQ  12
EFFN  3.231445
CKSUM 3595403650
STATS LOCAL MSV       -7.9439  0.71932
STATS LOCAL VITERBI   -7.6666  0.71932
STATS LOCAL FORWARD   -4.3889  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.56223  1.32606  1.19240  1.50816
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  0.00000        *
      1   3.39890  0.13436  3.44980  2.80403      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      2   0.14587  3.35060  2.78262  3.24947      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      3   0.30324  2.90483  1.93298  2.77896      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      4   3.39890  0.13436  3.44980  2.80403      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      5   3.05877  2.57614  3.10806  0.18356      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      6   3.39890  0.13436  3.44980  2.80403      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      7   3.05877  2.57614  3.10806  0.18356      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      8   0.14587  3.35060  2.78262  3.24947      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
      9   3.05877  2.57614  3.10806  0.18356      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     10   2.92673  3.55757  0.12052  3.45913     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     11   3.39890  0.13436  3.44980  2.80403     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     12   2.92673  3.55757  0.12052  3.45913     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     13   2.92673  3.55757  0.12052  3.45913     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     14   3.05877  2.57614  3.10806  0.18356     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     15   2.92673  3.55757  0.12052  3.45913     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     16   2.92673  3.55757  0.12052  3.45913     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     17   0.14587  3.35060  2.78262  3.24947     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     18   3.05877  2.57614  3.10806  0.18356     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     19   3.39890  0.13436  3.44980  2.80403     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     20   0.14587  3.35060  2.78262  3.24947     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     21   3.39890  0.13436  3.44980  2.80403     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     22   3.05877  2.57614  3.10806  0.18356     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     23   3.39890  0.13436  3.44980  2.80403     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     24   2.92673  3.55757  0.12052  3.45913     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     25   2.92673  3.55757  0.12052  3.45913     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     26   3.39890  0.13436  3.44980  2.80403     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     27   3.05877  2.57614  3.10806  0.18356     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     28   3.39890  0.13436  3.44980  2.80403     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     29   2.92673  3.55757  0.12052  3.45913     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     30   3.05877  2.57614  3.10806  0.18356     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     31   2.92673  3.55757  0.12052  3.45913     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     32   3.39890  0.13436  3.44980  2.80403     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     33   2.92673  3.55757  0.12052  3.45913     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     34   3.05877  2.57614  3.10806  0.18356     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     35   3.39890  0.13436  3.44980  2.80403     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     36   2.92673  3.55757  0.12052  3.45913     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     37   0.14587  3.35060  2.78262  3.24947     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     38   3.05877  2.57614  3.10806  0.18356     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     39   2.92673  3.55757  0.12052  3.45913     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     40   0.14587  3.35060  2.78262  3.24947     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     41   0.14587  3.35060  2.78262  3.24947     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     42   2.92673  3.55757  0.12052  3.45913     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     43   0.14587  3.35060  2.78262  3.24947     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     44   2.92673  3.55757  0.12052  3.45913     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03752  3.99479  3.99479  1.46634  0.26236  1.09861  0.40547
     45   3.39890  0.13436  3.44980  2.80403     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01893  3.97621        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:12:55 2012
NSEQ  67
EFFN  3.275574
CKSUM 1052117769
STATS LOCAL MSV       -8.1070  0.71931
STATS LOCAL VITERBI   -7.7354  0.71931
STATS LOCAL FORWARD   -4.2705  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54402  1.45383  1.14014  1.45657
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  0.00000        *
      1   2.60511  1.60359  2.67029  0.42205      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      2   0.14392  3.36506  2.79204  3.26529      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      3   0.14392  3.36506  2.79204  3.26529      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      4   3.41558  0.13232  3.46578  2.81622      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      5   3.07329  2.58539  3.12203  0.18117      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      6   3.07329  2.58539  3.12203  0.18117      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      7   3.07329  2.58539  3.12203  0.18117      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      8   2.93690  3.57231  0.11886  3.47538      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
      9   0.14392  3.36506  2.79204  3.26529      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     10   2.93690  3.57231  0.11886  3.47538     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     11   3.41558  0.13232  3.46578  2.81622     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     12   2.93690  3.57231  0.11886  3.47538     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     13   2.93690  3.57231  0.11886  3.47538     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     14   3.07329  2.58539  3.12203  0.18117     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     15   2.93690  3.57231  0.11886  3.47538     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     16   2.93690  3.57231  0.11886  3.47538     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     17   0.14392  3.36506  2.79204  3.26529     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     18   3.07329  2.58539  3.12203  0.18117     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     19   3.41558  0.13232  3.46578  2.81622     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     20   0.14392  3.36506  2.79204  3.26529     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     21   3.41558  0.13232  3.46578  2.81622     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     22   3.07329  2.58539  3.12203  0.18117     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     23   3.41558  0.13232  3.46578  2.81622     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     24   2.84909  3.19562  0.14671  3.28021     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     25   2.93690  3.57231  0.11886  3.47538     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     26   3.41558  0.13232  3.46578  2.81622     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     27   3.07329  2.58539  3.12203  0.18117     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     28   3.41558  0.13232  3.46578  2.81622     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     29   2.93690  3.57231  0.11886  3.47538     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     30   3.07329  2.58539  3.12203  0.18117     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     31   2.93690  3.57231  0.11886  3.47538     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     32   3.41558  0.13232  3.46578  2.81622     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     33   2.93690  3.57231  0.11886  3.47538     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     34   3.07329  2.58539  3.12203  0.18117     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     35   3.41558  0.13232  3.46578  2.81622     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     36   2.93690  3.57231  0.11886  3.47538     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     37   0.14392  3.36506  2.79204  3.26529     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     38   3.07329  2.58539  3.12203  0.18117     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     39   2.93690  3.57231  0.11886  3.47538     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     40   0.14392  3.36506  2.79204  3.26529     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     41   0.14392  3.36506  2.79204  3.26529     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     42   2.93690  3.57231  0.11886  3.47538     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     43   0.14392  3.36506  2.79204  3.26529     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     44   2.93690  3.57231  0.11886  3.47538     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03721  4.00288  4.00288  1.46634  0.26236  1.09861  0.40547
     45   3.41558  0.13232  3.46578  2.81622     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01878  3.98445        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:00 2012
NSEQ  36
EFFN  3.511230
CKSUM 2085619721
STATS LOCAL MSV       -7.2493  0.71933
STATS LOCAL VITERBI   -7.5654  0.71933
STATS LOCAL FORWARD   -4.2751  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.50964  1.42548  1.18575  1.45628
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  0.00000        *
      1   2.45497  0.77017  2.52710  0.99072      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      2   0.85115  2.19026  2.18289  1.05419      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      3   0.13441  3.43877  2.83979  3.34604      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      4   3.50040  0.12246  3.54695  2.87773      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      5   3.14806  2.63290  3.19393  0.16938      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      6   3.50040  0.12246  3.54695  2.87773      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      7   3.14806  2.63290  3.19393  0.16938      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      8   0.13441  3.43877  2.83979  3.34604      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
      9   0.13441  3.43877  2.83979  3.34604      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     10   2.98791  3.64678  0.11090  3.55766     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     11   3.50040  0.12246  3.54695  2.87773     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     12   2.98791  3.64678  0.11090  3.55766     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     13   2.98791  3.64678  0.11090  3.55766     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     14   3.14806  2.63290  3.19393  0.16938     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     15   2.98791  3.64678  0.11090  3.55766     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     16   2.98791  3.64678  0.11090  3.55766     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     17   0.13441  3.43877  2.83979  3.34604     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     18   3.14806  2.63290  3.19393  0.16938     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     19   3.50040  0.12246  3.54695  2.87773     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     20   0.13441  3.43877  2.83979  3.34604     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     21   3.50040  0.12246  3.54695  2.87773     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     22   3.14806  2.63290  3.19393  0.16938     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     23   3.50040  0.12246  3.54695  2.87773     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     24   2.98791  3.64678  0.11090  3.55766     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     25   2.98791  3.64678  0.11090  3.55766     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     26   3.21387  0.18937  3.26983  2.36118     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     27   3.14806  2.63290  3.19393  0.16938     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     28   3.50040  0.12246  3.54695  2.87773     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     29   2.98791  3.64678  0.11090  3.55766     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     30   3.14806  2.63290  3.19393  0.16938     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     31   2.98791  3.64678  0.11090  3.55766     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     32   2.96561  2.20742  3.01855  0.23621     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     33   2.98791  3.64678  0.11090  3.55766     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     34   3.14806  2.63290  3.19393  0.16938     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     35   3.50040  0.12246  3.54695  2.87773     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     36   2.98791  3.64678  0.11090  3.55766     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     37   0.13441  3.43877  2.83979  3.34604     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     38   3.14806  2.63290  3.19393  0.16938     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     39   2.98791  3.64678  0.11090  3.55766     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     40   0.13441  3.43877  2.83979  3.34604     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     41   0.13441  3.43877  2.83979  3.34604     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     42   2.98791  3.64678  0.11090  3.55766     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     43   0.13441  3.43877  2.83979  3.34604     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     44   2.98791  3.64678  0.11090  3.55766     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03565  4.04502  4.04502  1.46634  0.26236  1.09861  0.40547
     45   3.50040  0.12246  3.54695  2.87773     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01798  4.02736        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oneo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:05 2012
NSEQ  4
EFFN  3.183594
CKSUM 3162319453
STATS LOCAL MSV       -7.9834  0.71933
STATS LOCAL VITERBI   -7.8581  0.71933
STATS LOCAL FORWARD   -4.2189  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.62781  1.39287  1.14320  1.44187
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  0.00000        *
      1   0.14807  3.33468  2.77222  3.23207      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      2   3.38051  0.13666  3.43217  2.79055      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      3   0.14807  3.33468  2.77222  3.23207      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      4   3.38051  0.13666  3.43217  2.79055      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      5   3.04283  2.56598  3.09273  0.18624      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      6   3.38051  0.13666  3.43217  2.79055      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      7   3.04283  2.56598  3.09273  0.18624      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      8   3.04283  2.56598  3.09273  0.18624      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
      9   2.91546  3.54130  0.12237  3.44120      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     10   2.91546  3.54130  0.12237  3.44120     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     11   3.38051  0.13666  3.43217  2.79055     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     12   2.91546  3.54130  0.12237  3.44120     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     13   2.91546  3.54130  0.12237  3.44120     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     14   3.04283  2.56598  3.09273  0.18624     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     15   2.91546  3.54130  0.12237  3.44120     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     16   2.91546  3.54130  0.12237  3.44120     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     17   0.14807  3.33468  2.77222  3.23207     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     18   3.04283  2.56598  3.09273  0.18624     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     19   3.38051  0.13666  3.43217  2.79055     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     20   0.14807  3.33468  2.77222  3.23207     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     21   3.38051  0.13666  3.43217  2.79055     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     22   3.04283  2.56598  3.09273  0.18624     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     23   3.38051  0.13666  3.43217  2.79055     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     24   2.91546  3.54130  0.12237  3.44120     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     25   2.91546  3.54130  0.12237  3.44120     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     26   3.04283  2.56598  3.09273  0.18624     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     27   3.04283  2.56598  3.09273  0.18624     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     28   3.38051  0.13666  3.43217  2.79055     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     29   2.91546  3.54130  0.12237  3.44120     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     30   3.04283  2.56598  3.09273  0.18624     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     31   2.91546  3.54130  0.12237  3.44120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     32   3.38051  0.13666  3.43217  2.79055     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     33   2.91546  3.54130  0.12237  3.44120     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     34   3.04283  2.56598  3.09273  0.18624     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     35   3.38051  0.13666  3.43217  2.79055     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     36   2.91546  3.54130  0.12237  3.44120     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     37   0.14807  3.33468  2.77222  3.23207     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     38   3.04283  2.56598  3.09273  0.18624     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     39   2.91546  3.54130  0.12237  3.44120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     40   0.14807  3.33468  2.77222  3.23207     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     41   0.14807  3.33468  2.77222  3.23207     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     42   2.91546  3.54130  0.12237  3.44120     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     43   0.14807  3.33468  2.77222  3.23207     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     44   2.91546  3.54130  0.12237  3.44120     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03786  3.98594  3.98594  1.46634  0.26236  1.09861  0.40547
     45   3.38051  0.13666  3.43217  2.79055     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01911  3.96719        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onep_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:11 2012
NSEQ  2
EFFN  2.000000
CKSUM 1940936314
STATS LOCAL MSV       -7.3708  0.72759
STATS LOCAL VITERBI   -8.1974  0.72759
STATS LOCAL FORWARD   -3.7751  0.72759
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52005  1.34721  1.21583  1.49224
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.53331  3.02441  0.20344  2.88069     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oneq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:16 2012
NSEQ  2
EFFN  2.000000
CKSUM 3036652137
STATS LOCAL MSV       -7.5069  0.72803
STATS LOCAL VITERBI   -8.2859  0.72803
STATS LOCAL FORWARD   -3.3219  0.72803
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.37220  1.35028  1.24302  1.61559
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.92825  2.28391  0.95698  2.13014      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   0.23862  2.84929  2.43386  2.70756     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_oner_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:21 2012
NSEQ  8
EFFN  3.199219
CKSUM 1827277924
STATS LOCAL MSV       -8.0167  0.71933
STATS LOCAL VITERBI   -7.6622  0.71933
STATS LOCAL FORWARD   -4.3529  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.72054  1.38848  1.14415  1.37404
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
      1   3.38655  0.13590  3.43796  2.79498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      2   3.04806  2.56931  3.09775  0.18535      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      3   0.14734  3.33991  2.77563  3.23778      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      4   3.38655  0.13590  3.43796  2.79498      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      5   3.04806  2.56931  3.09775  0.18535      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      6   3.38655  0.13590  3.43796  2.79498      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      7   3.04806  2.56931  3.09775  0.18535      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      8   2.91917  3.54665  0.12176  3.44709      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      9   3.04806  2.56931  3.09775  0.18535      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     10   2.91917  3.54665  0.12176  3.44709     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     11   3.38655  0.13590  3.43796  2.79498     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     12   2.91917  3.54665  0.12176  3.44709     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     13   2.91917  3.54665  0.12176  3.44709     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     14   3.04806  2.56931  3.09775  0.18535     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     15   2.91917  3.54665  0.12176  3.44709     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     16   2.91917  3.54665  0.12176  3.44709     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     17   0.14734  3.33991  2.77563  3.23778     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     18   3.04806  2.56931  3.09775  0.18535     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     19   3.38655  0.13590  3.43796  2.79498     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     20   0.14734  3.33991  2.77563  3.23778     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     21   3.38655  0.13590  3.43796  2.79498     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     22   3.04806  2.56931  3.09775  0.18535     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     23   3.38655  0.13590  3.43796  2.79498     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     24   2.91917  3.54665  0.12176  3.44709     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     25   2.91917  3.54665  0.12176  3.44709     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     26   3.38655  0.13590  3.43796  2.79498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     27   3.04806  2.56931  3.09775  0.18535     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     28   3.38655  0.13590  3.43796  2.79498     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     29   2.91917  3.54665  0.12176  3.44709     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     30   3.04806  2.56931  3.09775  0.18535     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     31   2.91917  3.54665  0.12176  3.44709     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     32   3.04806  2.56931  3.09775  0.18535     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     33   2.91917  3.54665  0.12176  3.44709     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     34   3.04806  2.56931  3.09775  0.18535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     35   3.38655  0.13590  3.43796  2.79498     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     36   2.91917  3.54665  0.12176  3.44709     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     37   0.14734  3.33991  2.77563  3.23778     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     38   3.04806  2.56931  3.09775  0.18535     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     39   2.91917  3.54665  0.12176  3.44709     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     40   0.14734  3.33991  2.77563  3.23778     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     41   0.14734  3.33991  2.77563  3.23778     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     42   2.91917  3.54665  0.12176  3.44709     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     43   0.14734  3.33991  2.77563  3.23778     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     44   2.91917  3.54665  0.12176  3.44709     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     45   3.38655  0.13590  3.43796  2.79498     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_ones_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:29 2012
NSEQ  2
EFFN  2.000000
CKSUM 3483693243
STATS LOCAL MSV       -7.4492  0.72782
STATS LOCAL VITERBI   -8.1187  0.72782
STATS LOCAL FORWARD   -3.4857  0.72782
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29189  1.29167  1.43650  1.54798
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   0.23862  2.84929  2.43386  2.70756     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_onet_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:36 2012
NSEQ  19
EFFN  3.186768
CKSUM 722966639
STATS LOCAL MSV       -8.0861  0.71934
STATS LOCAL VITERBI   -7.7379  0.71934
STATS LOCAL FORWARD   -4.2531  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54585  1.46628  1.14119  1.44118
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  0.00000        *
      1   3.04390  2.56666  3.09375  0.18606      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      2   0.14792  3.33575  2.77291  3.23323      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      3   0.14792  3.33575  2.77291  3.23323      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      4   3.38174  0.13651  3.43335  2.79145      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      5   3.04390  2.56666  3.09375  0.18606      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      6   3.04390  2.56666  3.09375  0.18606      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      7   3.04390  2.56666  3.09375  0.18606      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      8   2.91622  3.54239  0.12225  3.44240      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
      9   0.14792  3.33575  2.77291  3.23323      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     10   2.91622  3.54239  0.12225  3.44240     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     11   3.38174  0.13651  3.43335  2.79145     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     12   2.91622  3.54239  0.12225  3.44240     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     13   2.91622  3.54239  0.12225  3.44240     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     14   3.04390  2.56666  3.09375  0.18606     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     15   2.91622  3.54239  0.12225  3.44240     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     16   2.91622  3.54239  0.12225  3.44240     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     17   0.14792  3.33575  2.77291  3.23323     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     18   3.04390  2.56666  3.09375  0.18606     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     19   3.38174  0.13651  3.43335  2.79145     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     20   0.14792  3.33575  2.77291  3.23323     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     21   3.38174  0.13651  3.43335  2.79145     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     22   3.04390  2.56666  3.09375  0.18606     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     23   3.38174  0.13651  3.43335  2.79145     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     24   2.91622  3.54239  0.12225  3.44240     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     25   2.91622  3.54239  0.12225  3.44240     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     26   3.38174  0.13651  3.43335  2.79145     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     27   3.04390  2.56666  3.09375  0.18606     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     28   3.38174  0.13651  3.43335  2.79145     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     29   2.91622  3.54239  0.12225  3.44240     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     30   3.04390  2.56666  3.09375  0.18606     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     31   2.91622  3.54239  0.12225  3.44240     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     32   3.38174  0.13651  3.43335  2.79145     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     33   2.91622  3.54239  0.12225  3.44240     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     34   3.04390  2.56666  3.09375  0.18606     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     35   3.38174  0.13651  3.43335  2.79145     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     36   2.91622  3.54239  0.12225  3.44240     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     37   0.14792  3.33575  2.77291  3.23323     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     38   3.04390  2.56666  3.09375  0.18606     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     39   2.91622  3.54239  0.12225  3.44240     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     40   0.14792  3.33575  2.77291  3.23323     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     41   0.14792  3.33575  2.77291  3.23323     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     42   2.91622  3.54239  0.12225  3.44240     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     43   0.14792  3.33575  2.77291  3.23323     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     44   2.91622  3.54239  0.12225  3.44240     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03783  3.98653  3.98653  1.46634  0.26236  1.09861  0.40547
     45   3.38174  0.13651  3.43335  2.79145     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01910  3.96779        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_sevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:03 2012
NSEQ  33
EFFN  3.226685
CKSUM 3895814705
STATS LOCAL MSV       -8.1231  0.71932
STATS LOCAL VITERBI   -7.7927  0.71932
STATS LOCAL FORWARD   -4.2040  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26742  1.47087  1.25669  1.58904
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  0.00000        *
      1   0.14609  3.34903  2.78159  3.24776      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      2   0.14609  3.34903  2.78159  3.24776      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      3   0.14609  3.34903  2.78159  3.24776      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      4   3.39708  0.13459  3.44806  2.80270      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      5   3.39708  0.13459  3.44806  2.80270      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      6   3.05719  2.57514  3.10654  0.18382      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      7   3.05719  2.57514  3.10654  0.18382      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      8   0.14609  3.34903  2.78159  3.24776      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
      9   0.14609  3.34903  2.78159  3.24776      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     10   0.14609  3.34903  2.78159  3.24776     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     11   3.39708  0.13459  3.44806  2.80270     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     12   2.18462  3.13998  0.22900  3.01864     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     13   2.92562  3.55597  0.12070  3.45736     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     14   2.92562  3.55597  0.12070  3.45736     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     15   2.92562  3.55597  0.12070  3.45736     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     16   2.92562  3.55597  0.12070  3.45736     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     17   0.14609  3.34903  2.78159  3.24776     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     18   3.05719  2.57514  3.10654  0.18382     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     19   3.39708  0.13459  3.44806  2.80270     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     20   0.14609  3.34903  2.78159  3.24776     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     21   3.39708  0.13459  3.44806  2.80270     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     22   3.05719  2.57514  3.10654  0.18382     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     23   3.05719  2.57514  3.10654  0.18382     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     24   2.92562  3.55597  0.12070  3.45736     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     25   2.92562  3.55597  0.12070  3.45736     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     26   3.39708  0.13459  3.44806  2.80270     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     27   3.05719  2.57514  3.10654  0.18382     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     28   3.39708  0.13459  3.44806  2.80270     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     29   0.14609  3.34903  2.78159  3.24776     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     30   3.05719  2.57514  3.10654  0.18382     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     31   2.92562  3.55597  0.12070  3.45736     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     32   2.92562  3.55597  0.12070  3.45736     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     33   2.92562  3.55597  0.12070  3.45736     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     34   3.05719  2.57514  3.10654  0.18382     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     35   3.39708  0.13459  3.44806  2.80270     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     36   2.92562  3.55597  0.12070  3.45736     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     37   0.14609  3.34903  2.78159  3.24776     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     38   3.05719  2.57514  3.10654  0.18382     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     39   2.92562  3.55597  0.12070  3.45736     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     40   0.14609  3.34903  2.78159  3.24776     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     41   0.14609  3.34903  2.78159  3.24776     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     42   2.92562  3.55597  0.12070  3.45736     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     43   0.14609  3.34903  2.78159  3.24776     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     44   3.39708  0.13459  3.44806  2.80270     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03755  3.99391  3.99391  1.46634  0.26236  1.09861  0.40547
     45   3.39708  0.13459  3.44806  2.80270     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01895  3.97531        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_sevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:21:10 2012
NSEQ  3
EFFN  3.000000
CKSUM 1225994552
STATS LOCAL MSV       -7.9561  0.72003
STATS LOCAL VITERBI   -7.8167  0.72003
STATS LOCAL FORWARD   -3.8315  0.72003
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33729  1.40049  1.25326  1.58281
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.86982  3.47591  0.13017  3.36931      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   0.15719  3.27118  2.73043  3.16274     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_seventeen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:25:19 2012
NSEQ  37
EFFN  3.130005
CKSUM 2559124236
STATS LOCAL MSV       -8.0966  0.71931
STATS LOCAL VITERBI   -7.8628  0.71931
STATS LOCAL FORWARD   -3.7948  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33527  1.34010  1.19529  1.75749
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  0.00000        *
      1   0.15061  3.31655  2.76033  3.21225      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      2   0.15061  3.31655  2.76033  3.21225      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      3   0.15061  3.31655  2.76033  3.21225      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      4   3.35955  0.13934  3.41207  2.77513      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      5   3.35955  0.13934  3.41207  2.77513      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      6   3.35955  0.13934  3.41207  2.77513      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      7   3.02474  2.55443  3.07532  0.18932      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      8   0.15061  3.31655  2.76033  3.21225      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
      9   2.90255  3.52270  0.12453  3.42073      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     10   2.90255  3.52270  0.12453  3.42073     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     11   3.35955  0.13934  3.41207  2.77513     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     12   0.15061  3.31655  2.76033  3.21225     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     13   2.90255  3.52270  0.12453  3.42073     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     14   2.90255  3.52270  0.12453  3.42073     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     15   2.90255  3.52270  0.12453  3.42073     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     16   2.90255  3.52270  0.12453  3.42073     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     17   0.15061  3.31655  2.76033  3.21225     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     18   3.02474  2.55443  3.07532  0.18932     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     19   3.35955  0.13934  3.41207  2.77513     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     20   0.15061  3.31655  2.76033  3.21225     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     21   3.35955  0.13934  3.41207  2.77513     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     22   3.02474  2.55443  3.07532  0.18932     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     23   3.35955  0.13934  3.41207  2.77513     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     24   2.90255  3.52270  0.12453  3.42073     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     25   2.90255  3.52270  0.12453  3.42073     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     26   3.35955  0.13934  3.41207  2.77513     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     27   3.02474  2.55443  3.07532  0.18932     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     28   3.35955  0.13934  3.41207  2.77513     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     29   2.90255  3.52270  0.12453  3.42073     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     30   3.02474  2.55443  3.07532  0.18932     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     31   2.90255  3.52270  0.12453  3.42073     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     32   2.90255  3.52270  0.12453  3.42073     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     33   0.15061  3.31655  2.76033  3.21225     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     34   3.02474  2.55443  3.07532  0.18932     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     35   3.35955  0.13934  3.41207  2.77513     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     36   2.90255  3.52270  0.12453  3.42073     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     37   0.15061  3.31655  2.76033  3.21225     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     38   3.02474  2.55443  3.07532  0.18932     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     39   2.90255  3.52270  0.12453  3.42073     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     40   0.15061  3.31655  2.76033  3.21225     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     41   0.15061  3.31655  2.76033  3.21225     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     42   2.90255  3.52270  0.12453  3.42073     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     43   0.15061  3.31655  2.76033  3.21225     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     44   3.35955  0.13934  3.41207  2.77513     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97594  3.97594  1.46634  0.26236  1.09861  0.40547
     45   3.35955  0.13934  3.41207  2.77513     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01931  3.95700        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:20:50 2012
NSEQ  14
EFFN  3.318848
CKSUM 2983350357
STATS LOCAL MSV       -8.1192  0.71933
STATS LOCAL VITERBI   -7.6210  0.71933
STATS LOCAL FORWARD   -3.8444  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23470  1.39154  1.29524  1.67903
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  0.00000        *
      1   0.14206  3.37903  2.80113  3.28058      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      2   3.43169  0.13038  3.48121  2.82797      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      3   0.14206  3.37903  2.80113  3.28058      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      4   2.76265  1.89290  2.82268  0.31911      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      5   3.43169  0.13038  3.48121  2.82797      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      6   3.43169  0.13038  3.48121  2.82797      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      7   3.08737  2.59435  3.13557  0.17888      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      8   0.14206  3.37903  2.80113  3.28058      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
      9   2.94667  3.58651  0.11730  3.49105      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     10   0.14206  3.37903  2.80113  3.28058     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     11   3.43169  0.13038  3.48121  2.82797     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     12   0.14206  3.37903  2.80113  3.28058     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     13   2.94667  3.58651  0.11730  3.49105     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     14   2.94667  3.58651  0.11730  3.49105     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     15   2.94667  3.58651  0.11730  3.49105     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     16   2.94667  3.58651  0.11730  3.49105     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     17   0.14206  3.37903  2.80113  3.28058     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     18   3.08737  2.59435  3.13557  0.17888     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     19   3.43169  0.13038  3.48121  2.82797     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     20   0.14206  3.37903  2.80113  3.28058     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     21   3.43169  0.13038  3.48121  2.82797     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     22   3.08737  2.59435  3.13557  0.17888     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     23   0.14206  3.37903  2.80113  3.28058     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     24   2.94667  3.58651  0.11730  3.49105     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     25   2.94667  3.58651  0.11730  3.49105     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     26   3.43169  0.13038  3.48121  2.82797     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     27   3.08737  2.59435  3.13557  0.17888     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     28   3.43169  0.13038  3.48121  2.82797     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     29   0.14206  3.37903  2.80113  3.28058     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     30   3.08737  2.59435  3.13557  0.17888     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     31   2.94667  3.58651  0.11730  3.49105     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     32   2.94667  3.58651  0.11730  3.49105     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     33   0.55410  2.60362  1.32347  2.46278     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     34   3.08737  2.59435  3.13557  0.17888     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     35   3.43169  0.13038  3.48121  2.82797     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     36   2.94667  3.58651  0.11730  3.49105     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     37   0.14206  3.37903  2.80113  3.28058     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     38   3.08737  2.59435  3.13557  0.17888     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     39   2.94667  3.58651  0.11730  3.49105     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     40   0.14206  3.37903  2.80113  3.28058     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     41   0.14206  3.37903  2.80113  3.28058     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     42   2.94667  3.58651  0.11730  3.49105     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     43   0.14206  3.37903  2.80113  3.28058     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     44   3.43169  0.13038  3.48121  2.82797     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03691  4.01075  4.01075  1.46634  0.26236  1.09861  0.40547
     45   3.43169  0.13038  3.48121  2.82797     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99247        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_sixteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:25:09 2012
NSEQ  11
EFFN  3.279053
CKSUM 3971834909
STATS LOCAL MSV       -8.0429  0.71932
STATS LOCAL VITERBI   -7.6961  0.71932
STATS LOCAL FORWARD   -4.2466  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.44601  1.30717  1.19132  1.66028
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  0.00000        *
      1   1.03707  0.94572  2.13766  1.97200      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      2   0.14377  3.36619  2.79278  3.26653      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      3   0.14377  3.36619  2.79278  3.26653      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      4   3.41689  0.13216  3.46703  2.81717      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      5   3.41689  0.13216  3.46703  2.81717      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      6   3.41689  0.13216  3.46703  2.81717      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      7   3.41689  0.13216  3.46703  2.81717      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      8   2.93769  3.57346  0.11874  3.47665      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
      9   0.14377  3.36619  2.79278  3.26653      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     10   0.14377  3.36619  2.79278  3.26653     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     11   3.41689  0.13216  3.46703  2.81717     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     12   2.93769  3.57346  0.11874  3.47665     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     13   2.93769  3.57346  0.11874  3.47665     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     14   3.07443  2.58612  3.12312  0.18098     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     15   2.93769  3.57346  0.11874  3.47665     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     16   2.93769  3.57346  0.11874  3.47665     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     17   0.14377  3.36619  2.79278  3.26653     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     18   3.07443  2.58612  3.12312  0.18098     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     19   3.41689  0.13216  3.46703  2.81717     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     20   0.14377  3.36619  2.79278  3.26653     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     21   3.41689  0.13216  3.46703  2.81717     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     22   3.07443  2.58612  3.12312  0.18098     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     23   3.07443  2.58612  3.12312  0.18098     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     24   2.93769  3.57346  0.11874  3.47665     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     25   2.93769  3.57346  0.11874  3.47665     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     26   3.41689  0.13216  3.46703  2.81717     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     27   3.07443  2.58612  3.12312  0.18098     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     28   3.41689  0.13216  3.46703  2.81717     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     29   2.93769  3.57346  0.11874  3.47665     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     30   3.07443  2.58612  3.12312  0.18098     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     31   2.93769  3.57346  0.11874  3.47665     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     32   2.93769  3.57346  0.11874  3.47665     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     33   2.93769  3.57346  0.11874  3.47665     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     34   3.07443  2.58612  3.12312  0.18098     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     35   3.41689  0.13216  3.46703  2.81717     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     36   2.93769  3.57346  0.11874  3.47665     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     37   0.14377  3.36619  2.79278  3.26653     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     38   3.07443  2.58612  3.12312  0.18098     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     39   2.93769  3.57346  0.11874  3.47665     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     40   0.14377  3.36619  2.79278  3.26653     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     41   0.14377  3.36619  2.79278  3.26653     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     42   2.93769  3.57346  0.11874  3.47665     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     43   0.14377  3.36619  2.79278  3.26653     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     44   3.41689  0.13216  3.46703  2.81717     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03719  4.00352  4.00352  1.46634  0.26236  1.09861  0.40547
     45   3.41689  0.13216  3.46703  2.81717     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98510        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:10 2012
NSEQ  7
EFFN  3.209473
CKSUM 4051946853
STATS LOCAL MSV       -8.1094  0.71932
STATS LOCAL VITERBI   -7.7031  0.71932
STATS LOCAL FORWARD   -4.2976  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47474  1.39097  1.25491  1.43874
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  0.00000        *
      1   3.39050  0.13541  3.44174  2.79787      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      2   3.05148  2.57149  3.10104  0.18478      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      3   0.14687  3.34333  2.77786  3.24152      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      4   3.05148  2.57149  3.10104  0.18478      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      5   3.39050  0.13541  3.44174  2.79787      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      6   3.39050  0.13541  3.44174  2.79787      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      7   3.05148  2.57149  3.10104  0.18478      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      8   0.14687  3.34333  2.77786  3.24152      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
      9   3.05148  2.57149  3.10104  0.18478      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     10   2.92158  3.55014  0.12136  3.45094     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     11   3.39050  0.13541  3.44174  2.79787     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     12   2.92158  3.55014  0.12136  3.45094     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     13   2.92158  3.55014  0.12136  3.45094     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     14   3.05148  2.57149  3.10104  0.18478     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     15   2.92158  3.55014  0.12136  3.45094     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     16   2.92158  3.55014  0.12136  3.45094     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     17   0.14687  3.34333  2.77786  3.24152     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     18   3.05148  2.57149  3.10104  0.18478     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     19   3.39050  0.13541  3.44174  2.79787     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     20   0.14687  3.34333  2.77786  3.24152     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     21   3.39050  0.13541  3.44174  2.79787     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     22   3.05148  2.57149  3.10104  0.18478     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     23   3.39050  0.13541  3.44174  2.79787     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     24   2.92158  3.55014  0.12136  3.45094     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     25   2.92158  3.55014  0.12136  3.45094     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     26   3.39050  0.13541  3.44174  2.79787     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     27   3.05148  2.57149  3.10104  0.18478     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     28   3.39050  0.13541  3.44174  2.79787     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     29   2.92158  3.55014  0.12136  3.45094     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     30   3.05148  2.57149  3.10104  0.18478     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     31   2.92158  3.55014  0.12136  3.45094     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     32   2.92158  3.55014  0.12136  3.45094     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     33   0.14687  3.34333  2.77786  3.24152     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     34   3.05148  2.57149  3.10104  0.18478     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     35   3.39050  0.13541  3.44174  2.79787     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     36   2.92158  3.55014  0.12136  3.45094     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     37   0.14687  3.34333  2.77786  3.24152     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     38   3.05148  2.57149  3.10104  0.18478     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     39   2.92158  3.55014  0.12136  3.45094     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     40   0.14687  3.34333  2.77786  3.24152     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     41   0.14687  3.34333  2.77786  3.24152     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     42   2.92158  3.55014  0.12136  3.45094     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     43   0.14687  3.34333  2.77786  3.24152     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     44   0.14687  3.34333  2.77786  3.24152     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03767  3.99074  3.99074  1.46634  0.26236  1.09861  0.40547
     45   3.39050  0.13541  3.44174  2.79787     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01901  3.97208        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:45 2012
NSEQ  4
EFFN  3.152344
CKSUM 810384303
STATS LOCAL MSV       -8.0298  0.71932
STATS LOCAL VITERBI   -7.7615  0.71932
STATS LOCAL FORWARD   -4.0731  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47142  1.39865  1.14135  1.58922
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  0.00000        *
      1   3.36834  0.13821  3.42049  2.78160      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      2   0.14954  3.32415  2.76532  3.22056      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      3   0.14954  3.32415  2.76532  3.22056      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      4   3.36834  0.13821  3.42049  2.78160      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      5   3.36834  0.13821  3.42049  2.78160      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      6   3.03232  2.55926  3.08260  0.18802      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      7   3.36834  0.13821  3.42049  2.78160      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      8   2.90797  3.53050  0.12362  3.42932      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
      9   0.14954  3.32415  2.76532  3.22056      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     10   2.90797  3.53050  0.12362  3.42932     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     11   3.03232  2.55926  3.08260  0.18802     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     12   2.90797  3.53050  0.12362  3.42932     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     13   2.90797  3.53050  0.12362  3.42932     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     14   3.03232  2.55926  3.08260  0.18802     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     15   2.90797  3.53050  0.12362  3.42932     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     16   2.90797  3.53050  0.12362  3.42932     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     17   0.14954  3.32415  2.76532  3.22056     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     18   3.03232  2.55926  3.08260  0.18802     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     19   3.36834  0.13821  3.42049  2.78160     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     20   0.14954  3.32415  2.76532  3.22056     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     21   3.36834  0.13821  3.42049  2.78160     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     22   3.03232  2.55926  3.08260  0.18802     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     23   3.36834  0.13821  3.42049  2.78160     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     24   2.90797  3.53050  0.12362  3.42932     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     25   2.90797  3.53050  0.12362  3.42932     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     26   3.36834  0.13821  3.42049  2.78160     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     27   3.03232  2.55926  3.08260  0.18802     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     28   3.36834  0.13821  3.42049  2.78160     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     29   2.90797  3.53050  0.12362  3.42932     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     30   3.03232  2.55926  3.08260  0.18802     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     31   2.90797  3.53050  0.12362  3.42932     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     32   2.90797  3.53050  0.12362  3.42932     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     33   2.90797  3.53050  0.12362  3.42932     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     34   3.03232  2.55926  3.08260  0.18802     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     35   3.36834  0.13821  3.42049  2.78160     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     36   2.90797  3.53050  0.12362  3.42932     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     37   0.14954  3.32415  2.76532  3.22056     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     38   3.03232  2.55926  3.08260  0.18802     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     39   2.90797  3.53050  0.12362  3.42932     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     40   0.14954  3.32415  2.76532  3.22056     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     41   0.14954  3.32415  2.76532  3.22056     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     42   2.90797  3.53050  0.12362  3.42932     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     43   0.14954  3.32415  2.76532  3.22056     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     44   0.14954  3.32415  2.76532  3.22056     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03808  3.98012  3.98012  1.46634  0.26236  1.09861  0.40547
     45   3.36834  0.13821  3.42049  2.78160     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01922  3.96126        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:30 2012
NSEQ  7
EFFN  3.264160
CKSUM 812206563
STATS LOCAL MSV       -8.0813  0.71932
STATS LOCAL VITERBI   -7.6510  0.71932
STATS LOCAL FORWARD   -3.9317  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46033  1.26627  1.27290  1.58016
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  0.00000        *
      1   0.14442  3.36134  2.78962  3.26122      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      2   2.93428  3.56852  0.11929  3.47120      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      3   0.14442  3.36134  2.78962  3.26122      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      4   3.41129  0.13284  3.46167  2.81309      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      5   3.06955  2.58301  3.11843  0.18178      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      6   3.41129  0.13284  3.46167  2.81309      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      7   3.06955  2.58301  3.11843  0.18178      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      8   2.93428  3.56852  0.11929  3.47120      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
      9   3.41129  0.13284  3.46167  2.81309      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     10   0.14442  3.36134  2.78962  3.26122     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     11   3.41129  0.13284  3.46167  2.81309     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     12   2.93428  3.56852  0.11929  3.47120     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     13   2.93428  3.56852  0.11929  3.47120     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     14   3.06955  2.58301  3.11843  0.18178     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     15   2.93428  3.56852  0.11929  3.47120     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     16   1.52120  2.73041  0.44409  2.59090     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     17   0.14442  3.36134  2.78962  3.26122     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     18   3.06955  2.58301  3.11843  0.18178     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     19   3.41129  0.13284  3.46167  2.81309     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     20   3.06955  2.58301  3.11843  0.18178     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     21   3.41129  0.13284  3.46167  2.81309     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     22   3.06955  2.58301  3.11843  0.18178     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     23   3.41129  0.13284  3.46167  2.81309     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     24   2.93428  3.56852  0.11929  3.47120     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     25   2.93428  3.56852  0.11929  3.47120     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     26   3.41129  0.13284  3.46167  2.81309     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     27   3.06955  2.58301  3.11843  0.18178     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     28   3.41129  0.13284  3.46167  2.81309     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     29   2.93428  3.56852  0.11929  3.47120     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     30   3.41129  0.13284  3.46167  2.81309     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     31   2.93428  3.56852  0.11929  3.47120     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     32   3.41129  0.13284  3.46167  2.81309     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     33   0.14442  3.36134  2.78962  3.26122     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     34   3.06955  2.58301  3.11843  0.18178     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     35   3.41129  0.13284  3.46167  2.81309     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     36   2.93428  3.56852  0.11929  3.47120     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     37   0.14442  3.36134  2.78962  3.26122     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     38   3.06955  2.58301  3.11843  0.18178     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     39   2.93428  3.56852  0.11929  3.47120     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     40   0.14442  3.36134  2.78962  3.26122     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     41   0.14442  3.36134  2.78962  3.26122     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     42   2.93428  3.56852  0.11929  3.47120     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     43   0.14442  3.36134  2.78962  3.26122     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     44   0.14442  3.36134  2.78962  3.26122     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03729  4.00080  4.00080  1.46634  0.26236  1.09861  0.40547
     45   3.41129  0.13284  3.46167  2.81309     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01882  3.98232        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirtyonea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:37 2012
NSEQ  2
EFFN  2.000000
CKSUM 1046995822
STATS LOCAL MSV       -7.5868  0.72754
STATS LOCAL VITERBI   -8.1846  0.72754
STATS LOCAL FORWARD   -3.1677  0.72754
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.59609  1.19386  1.27094  1.54321
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirtyoneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:43 2012
NSEQ  5
EFFN  3.129883
CKSUM 4096650600
STATS LOCAL MSV       -8.1750  0.71933
STATS LOCAL VITERBI   -7.7706  0.71933
STATS LOCAL FORWARD   -3.7607  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63938  1.10429  1.26146  1.65438
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  0.00000        *
      1   3.02470  2.55440  3.07528  0.18933      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      2   3.35951  0.13934  3.41202  2.77509      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      3   2.90252  3.52266  0.12454  3.42069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      4   3.35951  0.13934  3.41202  2.77509      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      5   3.02470  2.55440  3.07528  0.18933      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      6   3.35951  0.13934  3.41202  2.77509      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      7   3.35951  0.13934  3.41202  2.77509      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      8   2.90252  3.52266  0.12454  3.42069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
      9   3.35951  0.13934  3.41202  2.77509      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     10   0.15061  3.31651  2.76031  3.21221     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     11   3.35951  0.13934  3.41202  2.77509     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     12   2.90252  3.52266  0.12454  3.42069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     13   2.90252  3.52266  0.12454  3.42069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     14   3.02470  2.55440  3.07528  0.18933     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     15   2.90252  3.52266  0.12454  3.42069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     16   2.90252  3.52266  0.12454  3.42069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     17   0.15061  3.31651  2.76031  3.21221     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     18   3.02470  2.55440  3.07528  0.18933     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     19   3.35951  0.13934  3.41202  2.77509     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     20   3.02470  2.55440  3.07528  0.18933     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     21   3.35951  0.13934  3.41202  2.77509     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     22   3.02470  2.55440  3.07528  0.18933     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     23   3.35951  0.13934  3.41202  2.77509     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     24   2.90252  3.52266  0.12454  3.42069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     25   2.90252  3.52266  0.12454  3.42069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     26   3.35951  0.13934  3.41202  2.77509     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     27   3.02470  2.55440  3.07528  0.18933     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     28   3.35951  0.13934  3.41202  2.77509     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     29   2.90252  3.52266  0.12454  3.42069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     30   3.35951  0.13934  3.41202  2.77509     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     31   2.90252  3.52266  0.12454  3.42069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     32   3.35951  0.13934  3.41202  2.77509     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     33   0.15061  3.31651  2.76031  3.21221     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     34   3.02470  2.55440  3.07528  0.18933     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     35   3.35951  0.13934  3.41202  2.77509     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     36   2.90252  3.52266  0.12454  3.42069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     37   0.15061  3.31651  2.76031  3.21221     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     38   3.35951  0.13934  3.41202  2.77509     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     39   2.90252  3.52266  0.12454  3.42069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     40   0.15061  3.31651  2.76031  3.21221     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     41   0.15061  3.31651  2.76031  3.21221     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     42   2.90252  3.52266  0.12454  3.42069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     43   0.15061  3.31651  2.76031  3.21221     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     44   0.15061  3.31651  2.76031  3.21221     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  3.97591  3.97591  1.46634  0.26236  1.09861  0.40547
     45   3.35951  0.13934  3.41202  2.77509     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01931  3.95697        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirtythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:29:03 2012
NSEQ  48
EFFN  3.647461
CKSUM 4032312740
STATS LOCAL MSV       -7.4786  0.71932
STATS LOCAL VITERBI   -7.7717  0.71932
STATS LOCAL FORWARD   -3.9630  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.04914  1.61632  1.50702  1.47158
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  0.00000        *
      1   0.12954  3.47883  2.86559  3.38999      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      2   2.41031  3.38048  0.17632  3.27461      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      3   0.12954  3.47883  2.86559  3.38999      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      4   3.54628  0.11749  3.59080  2.91069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      5   3.18923  2.65900  3.23350  0.16327      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      6   3.54628  0.11749  3.59080  2.91069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      7   0.12954  3.47883  2.86559  3.38999      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      8   0.12954  3.47883  2.86559  3.38999      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
      9   3.18923  2.65900  3.23350  0.16327      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     10   0.16654  3.33925  2.54021  3.24169     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     11   3.18923  2.65900  3.23350  0.16327     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     12   3.01510  3.68679  0.10688  3.60196     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     13   3.01510  3.68679  0.10688  3.60196     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     14   2.02112  3.12880  0.25580  3.00727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     15   3.01510  3.68679  0.10688  3.60196     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     16   3.01510  3.68679  0.10688  3.60196     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     17   0.12954  3.47883  2.86559  3.38999     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     18   3.18923  2.65900  3.23350  0.16327     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     19   3.54628  0.11749  3.59080  2.91069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     20   0.12954  3.47883  2.86559  3.38999     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     21   3.54628  0.11749  3.59080  2.91069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     22   3.18923  2.65900  3.23350  0.16327     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     23   3.18923  2.65900  3.23350  0.16327     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     24   0.12954  3.47883  2.86559  3.38999     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     25   3.01510  3.68679  0.10688  3.60196     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     26   3.18923  2.65900  3.23350  0.16327     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     27   3.54628  0.11749  3.59080  2.91069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     28   3.54628  0.11749  3.59080  2.91069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     29   3.05688  2.33574  3.10645  0.20891     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     30   3.18923  2.65900  3.23350  0.16327     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     31   0.23754  3.03409  2.32699  2.72222     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     32   0.21364  3.18940  2.25141  3.08099     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     33   0.12954  3.47883  2.86559  3.38999     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     34   2.02083  2.14463  1.31013  0.73281     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     35   3.54628  0.11749  3.59080  2.91069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     36   3.01510  3.68679  0.10688  3.60196     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     37   0.12954  3.47883  2.86559  3.38999     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     38   3.18923  2.65900  3.23350  0.16327     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     39   3.01510  3.68679  0.10688  3.60196     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     40   0.12954  3.47883  2.86559  3.38999     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     41   0.12954  3.47883  2.86559  3.38999     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     42   0.12954  3.47883  2.86559  3.38999     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     43   0.12954  3.47883  2.86559  3.38999     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     44   0.12954  3.47883  2.86559  3.38999     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03480  4.06859  4.06859  1.46634  0.26236  1.09861  0.40547
     45   3.54628  0.11749  3.59080  2.91069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01755  4.05134        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_thirtytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:55 2012
NSEQ  3
EFFN  3.000000
CKSUM 879315818
STATS LOCAL MSV       -8.1527  0.71989
STATS LOCAL VITERBI   -7.7905  0.71989
STATS LOCAL FORWARD   -3.8287  0.71989
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.63033  1.27343  1.14436  1.58067
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   3.30705  0.14631  3.36166  2.73626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:04 2012
NSEQ  9
EFFN  3.440918
CKSUM 1294574687
STATS LOCAL MSV       -7.3109  0.71933
STATS LOCAL VITERBI   -7.6663  0.71933
STATS LOCAL FORWARD   -4.3716  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.46775  1.47309  1.24708  1.37438
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  0.00000        *
      1   3.47583  0.12523  3.52346  2.85999      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      2   3.12623  2.61905  3.17294  0.17273      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      3   0.13709  3.41738  2.82598  3.32258      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      4   2.97325  3.62528  0.11314  3.53388      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      5   2.52215  1.34100  2.59044  0.53933      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      6   2.51499  0.60153  2.58667  1.21776      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      7   3.12623  2.61905  3.17294  0.17273      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      8   3.12623  2.61905  3.17294  0.17273      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      9   0.13709  3.41738  2.82598  3.32258      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     10   3.12623  2.61905  3.17294  0.17273     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     11   3.47583  0.12523  3.52346  2.85999     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     12   2.97325  3.62528  0.11314  3.53388     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     13   2.97325  3.62528  0.11314  3.53388     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     14   3.12623  2.61905  3.17294  0.17273     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     15   2.97325  3.62528  0.11314  3.53388     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     16   2.97325  3.62528  0.11314  3.53388     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     17   0.13709  3.41738  2.82598  3.32258     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     18   3.12623  2.61905  3.17294  0.17273     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     19   3.47583  0.12523  3.52346  2.85999     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     20   0.13709  3.41738  2.82598  3.32258     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     21   3.47583  0.12523  3.52346  2.85999     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     22   3.12623  2.61905  3.17294  0.17273     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     23   3.47583  0.12523  3.52346  2.85999     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     24   2.97325  3.62528  0.11314  3.53388     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     25   2.97325  3.62528  0.11314  3.53388     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     26   3.47583  0.12523  3.52346  2.85999     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     27   3.12623  2.61905  3.17294  0.17273     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     28   3.47583  0.12523  3.52346  2.85999     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     29   2.97325  3.62528  0.11314  3.53388     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     30   3.12623  2.61905  3.17294  0.17273     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     31   0.13709  3.41738  2.82598  3.32258     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     32   2.97325  3.62528  0.11314  3.53388     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     33   2.97325  3.62528  0.11314  3.53388     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     34   3.12623  2.61905  3.17294  0.17273     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     35   3.47583  0.12523  3.52346  2.85999     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     36   2.97325  3.62528  0.11314  3.53388     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     37   0.13709  3.41738  2.82598  3.32258     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     38   3.12623  2.61905  3.17294  0.17273     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     39   2.97325  3.62528  0.11314  3.53388     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     40   0.13709  3.41738  2.82598  3.32258     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     41   0.13709  3.41738  2.82598  3.32258     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     42   2.97325  3.62528  0.11314  3.53388     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     43   0.13709  3.41738  2.82598  3.32258     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     44   0.13709  3.41738  2.82598  3.32258     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     45   3.47583  0.12523  3.52346  2.85999     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01821  4.01475        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:09 2012
NSEQ  11
EFFN  3.305908
CKSUM 1468312356
STATS LOCAL MSV       -8.0909  0.71933
STATS LOCAL VITERBI   -7.7497  0.71933
STATS LOCAL FORWARD   -4.1867  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47160  1.44665  1.25108  1.39075
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  0.00000        *
      1   3.42690  0.13095  3.47662  2.82448      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      2   3.08318  2.59169  3.13154  0.17955      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      3   0.14261  3.37488  2.79843  3.27603      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      4   2.94377  3.58229  0.11776  3.48639      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      5   2.56468  1.50508  2.63123  0.46352      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      6   3.42690  0.13095  3.47662  2.82448      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      7   3.08318  2.59169  3.13154  0.17955      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      8   3.08318  2.59169  3.13154  0.17955      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
      9   0.14261  3.37488  2.79843  3.27603      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     10   3.08318  2.59169  3.13154  0.17955     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     11   3.42690  0.13095  3.47662  2.82448     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     12   2.94377  3.58229  0.11776  3.48639     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     13   2.94377  3.58229  0.11776  3.48639     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     14   3.08318  2.59169  3.13154  0.17955     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     15   2.94377  3.58229  0.11776  3.48639     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     16   2.94377  3.58229  0.11776  3.48639     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     17   0.14261  3.37488  2.79843  3.27603     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     18   3.08318  2.59169  3.13154  0.17955     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     19   3.42690  0.13095  3.47662  2.82448     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     20   0.14261  3.37488  2.79843  3.27603     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     21   3.42690  0.13095  3.47662  2.82448     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     22   3.08318  2.59169  3.13154  0.17955     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     23   3.42690  0.13095  3.47662  2.82448     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     24   2.94377  3.58229  0.11776  3.48639     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     25   2.94377  3.58229  0.11776  3.48639     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     26   3.42690  0.13095  3.47662  2.82448     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     27   3.08318  2.59169  3.13154  0.17955     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     28   3.42690  0.13095  3.47662  2.82448     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     29   2.94377  3.58229  0.11776  3.48639     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     30   3.08318  2.59169  3.13154  0.17955     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     31   2.94377  3.58229  0.11776  3.48639     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     32   2.94377  3.58229  0.11776  3.48639     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     33   0.14261  3.37488  2.79843  3.27603     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     34   3.08318  2.59169  3.13154  0.17955     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     35   3.42690  0.13095  3.47662  2.82448     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     36   2.94377  3.58229  0.11776  3.48639     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     37   0.14261  3.37488  2.79843  3.27603     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     38   3.08318  2.59169  3.13154  0.17955     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     39   2.94377  3.58229  0.11776  3.48639     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     40   0.14261  3.37488  2.79843  3.27603     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     41   0.14261  3.37488  2.79843  3.27603     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     42   2.94377  3.58229  0.11776  3.48639     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     43   0.14261  3.37488  2.79843  3.27603     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     44   0.14261  3.37488  2.79843  3.27603     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03700  4.00841  4.00841  1.46634  0.26236  1.09861  0.40547
     45   3.42690  0.13095  3.47662  2.82448     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.99008        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:16 2012
NSEQ  2
EFFN  2.000000
CKSUM 2545387361
STATS LOCAL MSV       -7.5549  0.72799
STATS LOCAL VITERBI   -8.0703  0.72799
STATS LOCAL FORWARD   -3.5515  0.72799
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45791  1.39682  1.31896  1.37642
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.57915  2.25909  2.64442  0.28946     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.81865  0.23582  2.88868  2.35662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   0.23862  2.84929  2.43386  2.70756     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threed_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:21 2012
NSEQ  45
EFFN  3.683167
CKSUM 4010874590
STATS LOCAL MSV       -7.4061  0.71931
STATS LOCAL VITERBI   -7.6816  0.71931
STATS LOCAL FORWARD   -4.2977  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.49218  1.44109  1.26114  1.36603
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  0.00000        *
      1   3.55794  0.11626  3.60194  2.91903      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      2   2.07066  2.41571  2.68444  0.33361      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      3   0.12833  3.48903  2.87216  3.40119      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      4   2.91264  3.46927  0.13977  3.10184      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      5   2.97042  2.13237  3.02366  0.24649      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      6   3.55794  0.11626  3.60194  2.91903      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      7   3.19979  2.66569  3.24363  0.16175      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      8   3.19979  2.66569  3.24363  0.16175      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
      9   0.12833  3.48903  2.87216  3.40119      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     10   3.19979  2.66569  3.24363  0.16175     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     11   3.55794  0.11626  3.60194  2.91903     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     12   3.02197  3.69692  0.10588  3.61320     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     13   3.02197  3.69692  0.10588  3.61320     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     14   3.19979  2.66569  3.24363  0.16175     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     15   3.02197  3.69692  0.10588  3.61320     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     16   3.02197  3.69692  0.10588  3.61320     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     17   0.12833  3.48903  2.87216  3.40119     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     18   3.19979  2.66569  3.24363  0.16175     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     19   3.55794  0.11626  3.60194  2.91903     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     20   0.12833  3.48903  2.87216  3.40119     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     21   3.55794  0.11626  3.60194  2.91903     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     22   3.19979  2.66569  3.24363  0.16175     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     23   3.55794  0.11626  3.60194  2.91903     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     24   3.02197  3.69692  0.10588  3.61320     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     25   3.02197  3.69692  0.10588  3.61320     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     26   3.55794  0.11626  3.60194  2.91903     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     27   3.19979  2.66569  3.24363  0.16175     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     28   3.55794  0.11626  3.60194  2.91903     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     29   3.02197  3.69692  0.10588  3.61320     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     30   3.11654  2.45448  3.16369  0.18933     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     31   0.75718  2.58056  0.99991  2.43760     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     32   3.02197  3.69692  0.10588  3.61320     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     33   1.66714  2.17550  0.79154  1.40848     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     34   3.19979  2.66569  3.24363  0.16175     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     35   3.55794  0.11626  3.60194  2.91903     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     36   3.02197  3.69692  0.10588  3.61320     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     37   0.12833  3.48903  2.87216  3.40119     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     38   3.19979  2.66569  3.24363  0.16175     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     39   3.02197  3.69692  0.10588  3.61320     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     40   0.12833  3.48903  2.87216  3.40119     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     41   0.12833  3.48903  2.87216  3.40119     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     42   3.02197  3.69692  0.10588  3.61320     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     43   0.12833  3.48903  2.87216  3.40119     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     44   0.12833  3.48903  2.87216  3.40119     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03459  4.07468  4.07468  1.46634  0.26236  1.09861  0.40547
     45   3.55794  0.11626  3.60194  2.91903     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01744  4.05754        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:26 2012
NSEQ  11
EFFN  3.246826
CKSUM 1748157936
STATS LOCAL MSV       -7.9085  0.71932
STATS LOCAL VITERBI   -7.7074  0.71932
STATS LOCAL FORWARD   -4.1988  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40311  1.45887  1.31500  1.37360
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  0.00000        *
      1   3.40474  0.13364  3.45540  2.80830      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      2   3.06385  2.57938  3.11295  0.18272      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      3   0.14519  3.35567  2.78592  3.25501      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      4   0.14519  3.35567  2.78592  3.25501      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      5   3.06385  2.57938  3.11295  0.18272      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      6   3.40474  0.13364  3.45540  2.80830      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      7   3.06385  2.57938  3.11295  0.18272      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      8   3.06385  2.57938  3.11295  0.18272      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
      9   0.14519  3.35567  2.78592  3.25501      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     10   3.06385  2.57938  3.11295  0.18272     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     11   3.40474  0.13364  3.45540  2.80830     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     12   2.93029  3.56274  0.11993  3.46483     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     13   2.93029  3.56274  0.11993  3.46483     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     14   3.06385  2.57938  3.11295  0.18272     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     15   2.93029  3.56274  0.11993  3.46483     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     16   2.93029  3.56274  0.11993  3.46483     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     17   0.14519  3.35567  2.78592  3.25501     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     18   3.06385  2.57938  3.11295  0.18272     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     19   3.40474  0.13364  3.45540  2.80830     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     20   0.14519  3.35567  2.78592  3.25501     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     21   3.40474  0.13364  3.45540  2.80830     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     22   3.06385  2.57938  3.11295  0.18272     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     23   3.40474  0.13364  3.45540  2.80830     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     24   2.93029  3.56274  0.11993  3.46483     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     25   2.93029  3.56274  0.11993  3.46483     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     26   3.40474  0.13364  3.45540  2.80830     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     27   3.06385  2.57938  3.11295  0.18272     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     28   3.40474  0.13364  3.45540  2.80830     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     29   2.93029  3.56274  0.11993  3.46483     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     30   3.06385  2.57938  3.11295  0.18272     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     31   2.93029  3.56274  0.11993  3.46483     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     32   2.93029  3.56274  0.11993  3.46483     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     33   2.93029  3.56274  0.11993  3.46483     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     34   3.06385  2.57938  3.11295  0.18272     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     35   3.40474  0.13364  3.45540  2.80830     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     36   2.93029  3.56274  0.11993  3.46483     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     37   0.14519  3.35567  2.78592  3.25501     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     38   3.06385  2.57938  3.11295  0.18272     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     39   0.14519  3.35567  2.78592  3.25501     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     40   0.14519  3.35567  2.78592  3.25501     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     41   0.14519  3.35567  2.78592  3.25501     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     42   2.93029  3.56274  0.11993  3.46483     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     43   0.14519  3.35567  2.78592  3.25501     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     44   0.14519  3.35567  2.78592  3.25501     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99762  3.99762  1.46634  0.26236  1.09861  0.40547
     45   3.40474  0.13364  3.45540  2.80830     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97909        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:31 2012
NSEQ  6
EFFN  3.260742
CKSUM 2895050922
STATS LOCAL MSV       -8.0239  0.71933
STATS LOCAL VITERBI   -7.6662  0.71933
STATS LOCAL FORWARD   -4.3060  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47461  1.45532  1.31571  1.31109
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  0.00000        *
      1   3.41001  0.13300  3.46044  2.81215      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      2   3.06843  2.58230  3.11735  0.18196      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      3   0.14457  3.36023  2.78889  3.26000      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      4   2.93350  3.56738  0.11941  3.46995      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      5   3.06843  2.58230  3.11735  0.18196      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      6   3.41001  0.13300  3.46044  2.81215      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      7   3.06843  2.58230  3.11735  0.18196      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      8   3.06843  2.58230  3.11735  0.18196      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
      9   0.14457  3.36023  2.78889  3.26000      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     10   3.06843  2.58230  3.11735  0.18196     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     11   3.41001  0.13300  3.46044  2.81215     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     12   2.93350  3.56738  0.11941  3.46995     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     13   2.93350  3.56738  0.11941  3.46995     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     14   3.06843  2.58230  3.11735  0.18196     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     15   2.93350  3.56738  0.11941  3.46995     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     16   2.93350  3.56738  0.11941  3.46995     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     17   0.14457  3.36023  2.78889  3.26000     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     18   3.06843  2.58230  3.11735  0.18196     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     19   3.41001  0.13300  3.46044  2.81215     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     20   0.14457  3.36023  2.78889  3.26000     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     21   3.41001  0.13300  3.46044  2.81215     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     22   3.06843  2.58230  3.11735  0.18196     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     23   3.41001  0.13300  3.46044  2.81215     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     24   2.93350  3.56738  0.11941  3.46995     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     25   2.93350  3.56738  0.11941  3.46995     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     26   3.41001  0.13300  3.46044  2.81215     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     27   3.06843  2.58230  3.11735  0.18196     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     28   3.41001  0.13300  3.46044  2.81215     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     29   2.93350  3.56738  0.11941  3.46995     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     30   3.06843  2.58230  3.11735  0.18196     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     31   0.14457  3.36023  2.78889  3.26000     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     32   2.93350  3.56738  0.11941  3.46995     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     33   3.06843  2.58230  3.11735  0.18196     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     34   3.06843  2.58230  3.11735  0.18196     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     35   3.41001  0.13300  3.46044  2.81215     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     36   2.93350  3.56738  0.11941  3.46995     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     37   0.14457  3.36023  2.78889  3.26000     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     38   3.06843  2.58230  3.11735  0.18196     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     39   2.93350  3.56738  0.11941  3.46995     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     40   0.14457  3.36023  2.78889  3.26000     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     41   0.14457  3.36023  2.78889  3.26000     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     42   2.93350  3.56738  0.11941  3.46995     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     43   0.14457  3.36023  2.78889  3.26000     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     44   0.14457  3.36023  2.78889  3.26000     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03731  4.00017  4.00017  1.46634  0.26236  1.09861  0.40547
     45   3.41001  0.13300  3.46044  2.81215     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01883  3.98169        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threeg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:36 2012
NSEQ  4
EFFN  3.246094
CKSUM 3441283875
STATS LOCAL MSV       -7.9932  0.71931
STATS LOCAL VITERBI   -7.7567  0.71931
STATS LOCAL FORWARD   -4.3175  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54718  1.53589  1.19538  1.31193
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
      1   3.06361  2.57923  3.11272  0.18276      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      2   3.06361  2.57923  3.11272  0.18276      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      3   0.14522  3.35543  2.78576  3.25475      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      4   0.14522  3.35543  2.78576  3.25475      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      5   3.06361  2.57923  3.11272  0.18276      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      6   3.40447  0.13368  3.45513  2.80810      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      7   3.06361  2.57923  3.11272  0.18276      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      8   3.06361  2.57923  3.11272  0.18276      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      9   0.14522  3.35543  2.78576  3.25475      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     10   3.06361  2.57923  3.11272  0.18276     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     11   3.40447  0.13368  3.45513  2.80810     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     12   2.93012  3.56249  0.11996  3.46456     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     13   2.93012  3.56249  0.11996  3.46456     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     14   3.06361  2.57923  3.11272  0.18276     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     15   2.93012  3.56249  0.11996  3.46456     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     16   2.93012  3.56249  0.11996  3.46456     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     17   0.14522  3.35543  2.78576  3.25475     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     18   3.06361  2.57923  3.11272  0.18276     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     19   3.40447  0.13368  3.45513  2.80810     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     20   0.14522  3.35543  2.78576  3.25475     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     21   3.40447  0.13368  3.45513  2.80810     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     22   3.06361  2.57923  3.11272  0.18276     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     23   3.40447  0.13368  3.45513  2.80810     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     24   2.93012  3.56249  0.11996  3.46456     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     25   2.93012  3.56249  0.11996  3.46456     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     26   3.40447  0.13368  3.45513  2.80810     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     27   3.06361  2.57923  3.11272  0.18276     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     28   3.40447  0.13368  3.45513  2.80810     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     29   2.93012  3.56249  0.11996  3.46456     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     30   3.06361  2.57923  3.11272  0.18276     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     31   2.93012  3.56249  0.11996  3.46456     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     32   2.93012  3.56249  0.11996  3.46456     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     33   2.93012  3.56249  0.11996  3.46456     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     34   3.06361  2.57923  3.11272  0.18276     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     35   3.40447  0.13368  3.45513  2.80810     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     36   2.93012  3.56249  0.11996  3.46456     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     37   0.14522  3.35543  2.78576  3.25475     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     38   3.06361  2.57923  3.11272  0.18276     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     39   2.93012  3.56249  0.11996  3.46456     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     40   0.14522  3.35543  2.78576  3.25475     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     41   0.14522  3.35543  2.78576  3.25475     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     42   2.93012  3.56249  0.11996  3.46456     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     43   0.14522  3.35543  2.78576  3.25475     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     44   2.93012  3.56249  0.11996  3.46456     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     45   3.40447  0.13368  3.45513  2.80810     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threeh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:40 2012
NSEQ  4
EFFN  3.269531
CKSUM 1714705976
STATS LOCAL MSV       -7.9738  0.71932
STATS LOCAL VITERBI   -7.6259  0.71932
STATS LOCAL FORWARD   -4.2493  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40268  1.53488  1.31339  1.31054
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  0.00000        *
      1   3.07131  2.58413  3.12013  0.18149      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      2   3.07131  2.58413  3.12013  0.18149      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      3   0.14418  3.36310  2.79076  3.26314      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      4   2.93551  3.57031  0.11909  3.47317      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      5   3.07131  2.58413  3.12013  0.18149      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      6   3.41331  0.13259  3.46361  2.81457      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      7   3.07131  2.58413  3.12013  0.18149      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      8   3.07131  2.58413  3.12013  0.18149      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
      9   0.14418  3.36310  2.79076  3.26314      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     10   3.07131  2.58413  3.12013  0.18149     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     11   3.41331  0.13259  3.46361  2.81457     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     12   2.93551  3.57031  0.11909  3.47317     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     13   2.93551  3.57031  0.11909  3.47317     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     14   3.07131  2.58413  3.12013  0.18149     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     15   2.93551  3.57031  0.11909  3.47317     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     16   2.93551  3.57031  0.11909  3.47317     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     17   0.14418  3.36310  2.79076  3.26314     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     18   3.07131  2.58413  3.12013  0.18149     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     19   3.41331  0.13259  3.46361  2.81457     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     20   0.14418  3.36310  2.79076  3.26314     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     21   3.41331  0.13259  3.46361  2.81457     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     22   3.07131  2.58413  3.12013  0.18149     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     23   3.41331  0.13259  3.46361  2.81457     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     24   2.93551  3.57031  0.11909  3.47317     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     25   2.93551  3.57031  0.11909  3.47317     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     26   3.41331  0.13259  3.46361  2.81457     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     27   3.07131  2.58413  3.12013  0.18149     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     28   3.41331  0.13259  3.46361  2.81457     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     29   2.93551  3.57031  0.11909  3.47317     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     30   3.07131  2.58413  3.12013  0.18149     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     31   0.14418  3.36310  2.79076  3.26314     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     32   2.93551  3.57031  0.11909  3.47317     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     33   0.14418  3.36310  2.79076  3.26314     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     34   3.07131  2.58413  3.12013  0.18149     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     35   3.41331  0.13259  3.46361  2.81457     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     36   2.93551  3.57031  0.11909  3.47317     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     37   0.14418  3.36310  2.79076  3.26314     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     38   3.07131  2.58413  3.12013  0.18149     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     39   2.93551  3.57031  0.11909  3.47317     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     40   0.14418  3.36310  2.79076  3.26314     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     41   0.14418  3.36310  2.79076  3.26314     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     42   2.93551  3.57031  0.11909  3.47317     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     43   0.14418  3.36310  2.79076  3.26314     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     44   0.14418  3.36310  2.79076  3.26314     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03725  4.00178  4.00178  1.46634  0.26236  1.09861  0.40547
     45   3.41331  0.13259  3.46361  2.81457     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01880  3.98333        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:45 2012
NSEQ  4
EFFN  3.285156
CKSUM 3641792887
STATS LOCAL MSV       -7.9429  0.71931
STATS LOCAL VITERBI   -7.7130  0.71931
STATS LOCAL FORWARD   -4.1718  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33712  1.53172  1.37863  1.31189
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
      1   3.41917  0.13188  3.46922  2.81884      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      2   3.07642  2.58739  3.12504  0.18065      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      3   0.14350  3.36817  2.79406  3.26870      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      4   2.93908  3.57547  0.11851  3.47887      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      5   3.07642  2.58739  3.12504  0.18065      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      6   3.41917  0.13188  3.46922  2.81884      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      7   3.07642  2.58739  3.12504  0.18065      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      8   3.07642  2.58739  3.12504  0.18065      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      9   0.14350  3.36817  2.79406  3.26870      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     10   3.07642  2.58739  3.12504  0.18065     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     11   3.41917  0.13188  3.46922  2.81884     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     12   2.93908  3.57547  0.11851  3.47887     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     13   2.93908  3.57547  0.11851  3.47887     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     14   3.07642  2.58739  3.12504  0.18065     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     15   2.93908  3.57547  0.11851  3.47887     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     16   2.93908  3.57547  0.11851  3.47887     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     17   0.14350  3.36817  2.79406  3.26870     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     18   3.07642  2.58739  3.12504  0.18065     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     19   3.41917  0.13188  3.46922  2.81884     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     20   0.14350  3.36817  2.79406  3.26870     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     21   3.41917  0.13188  3.46922  2.81884     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     22   3.07642  2.58739  3.12504  0.18065     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     23   3.41917  0.13188  3.46922  2.81884     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     24   2.93908  3.57547  0.11851  3.47887     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     25   2.93908  3.57547  0.11851  3.47887     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     26   3.07642  2.58739  3.12504  0.18065     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     27   3.07642  2.58739  3.12504  0.18065     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     28   3.41917  0.13188  3.46922  2.81884     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     29   0.14350  3.36817  2.79406  3.26870     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     30   3.07642  2.58739  3.12504  0.18065     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     31   0.14350  3.36817  2.79406  3.26870     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     32   2.93908  3.57547  0.11851  3.47887     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     33   0.14350  3.36817  2.79406  3.26870     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     34   3.07642  2.58739  3.12504  0.18065     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     35   3.41917  0.13188  3.46922  2.81884     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     36   2.93908  3.57547  0.11851  3.47887     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     37   0.14350  3.36817  2.79406  3.26870     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     38   3.07642  2.58739  3.12504  0.18065     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     39   2.93908  3.57547  0.11851  3.47887     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     40   0.14350  3.36817  2.79406  3.26870     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     41   0.14350  3.36817  2.79406  3.26870     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     42   2.93908  3.57547  0.11851  3.47887     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     43   0.14350  3.36817  2.79406  3.26870     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     44   0.14350  3.36817  2.79406  3.26870     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     45   3.41917  0.13188  3.46922  2.81884     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:14:51 2012
NSEQ  13
EFFN  3.526123
CKSUM 1276633975
STATS LOCAL MSV       -7.3728  0.71932
STATS LOCAL VITERBI   -7.7120  0.71932
STATS LOCAL FORWARD   -4.2838  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.65970  1.42943  1.18428  1.33031
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  0.00000        *
      1   2.45176  1.04716  2.52278  0.72838      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      2   3.15264  2.63580  3.19832  0.16869      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      3   0.13385  3.44324  2.84268  3.35093      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      4   2.99096  3.65126  0.11044  3.56262      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      5   3.15264  2.63580  3.19832  0.16869      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      6   3.50552  0.12189  3.55185  2.88142      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      7   3.15264  2.63580  3.19832  0.16869      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      8   3.15264  2.63580  3.19832  0.16869      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
      9   2.06638  3.13182  0.24789  3.01044      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     10   3.50552  0.12189  3.55185  2.88142     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     11   3.50552  0.12189  3.55185  2.88142     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     12   2.99096  3.65126  0.11044  3.56262     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     13   2.99096  3.65126  0.11044  3.56262     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     14   3.15264  2.63580  3.19832  0.16869     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     15   2.99096  3.65126  0.11044  3.56262     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     16   2.99096  3.65126  0.11044  3.56262     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     17   0.13385  3.44324  2.84268  3.35093     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     18   3.15264  2.63580  3.19832  0.16869     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     19   3.50552  0.12189  3.55185  2.88142     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     20   0.13385  3.44324  2.84268  3.35093     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     21   3.50552  0.12189  3.55185  2.88142     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     22   3.15264  2.63580  3.19832  0.16869     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     23   3.50552  0.12189  3.55185  2.88142     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     24   2.99096  3.65126  0.11044  3.56262     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     25   2.99096  3.65126  0.11044  3.56262     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     26   3.50552  0.12189  3.55185  2.88142     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     27   3.15264  2.63580  3.19832  0.16869     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     28   3.50552  0.12189  3.55185  2.88142     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     29   2.99096  3.65126  0.11044  3.56262     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     30   3.15264  2.63580  3.19832  0.16869     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     31   0.60052  2.60773  1.22791  2.46665     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     32   2.99096  3.65126  0.11044  3.56262     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     33   2.99096  3.65126  0.11044  3.56262     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     34   3.15264  2.63580  3.19832  0.16869     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     35   3.50552  0.12189  3.55185  2.88142     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     36   2.99096  3.65126  0.11044  3.56262     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     37   0.13385  3.44324  2.84268  3.35093     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     38   3.15264  2.63580  3.19832  0.16869     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     39   2.99096  3.65126  0.11044  3.56262     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     40   0.13385  3.44324  2.84268  3.35093     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     41   0.13385  3.44324  2.84268  3.35093     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     42   2.99096  3.65126  0.11044  3.56262     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     43   0.13385  3.44324  2.84268  3.35093     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     44   3.15264  2.63580  3.19832  0.16869     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03555  4.04762  4.04762  1.46634  0.26236  1.09861  0.40547
     45   3.50552  0.12189  3.55185  2.88142     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01793  4.03001        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:15:00 2012
NSEQ  7
EFFN  3.236816
CKSUM 408270587
STATS LOCAL MSV       -8.0805  0.71933
STATS LOCAL VITERBI   -7.6899  0.71933
STATS LOCAL FORWARD   -4.3059  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47561  1.38702  1.31668  1.37231
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  0.00000        *
      1   3.40094  0.13411  3.45175  2.80552      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      2   3.06055  2.57727  3.10977  0.18327      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      3   0.14563  3.35238  2.78377  3.25141      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      4   2.92797  3.55938  0.12031  3.46113      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      5   3.40094  0.13411  3.45175  2.80552      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      6   3.40094  0.13411  3.45175  2.80552      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      7   3.06055  2.57727  3.10977  0.18327      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      8   3.06055  2.57727  3.10977  0.18327      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
      9   0.14563  3.35238  2.78377  3.25141      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     10   3.06055  2.57727  3.10977  0.18327     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     11   3.40094  0.13411  3.45175  2.80552     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     12   2.92797  3.55938  0.12031  3.46113     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     13   2.92797  3.55938  0.12031  3.46113     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     14   3.06055  2.57727  3.10977  0.18327     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     15   2.92797  3.55938  0.12031  3.46113     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     16   2.92797  3.55938  0.12031  3.46113     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     17   0.14563  3.35238  2.78377  3.25141     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     18   3.06055  2.57727  3.10977  0.18327     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     19   3.40094  0.13411  3.45175  2.80552     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     20   0.14563  3.35238  2.78377  3.25141     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     21   3.40094  0.13411  3.45175  2.80552     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     22   3.06055  2.57727  3.10977  0.18327     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     23   3.40094  0.13411  3.45175  2.80552     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     24   2.92797  3.55938  0.12031  3.46113     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     25   2.92797  3.55938  0.12031  3.46113     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     26   3.40094  0.13411  3.45175  2.80552     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     27   3.06055  2.57727  3.10977  0.18327     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     28   3.40094  0.13411  3.45175  2.80552     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     29   2.92797  3.55938  0.12031  3.46113     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     30   3.06055  2.57727  3.10977  0.18327     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     31   0.14563  3.35238  2.78377  3.25141     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     32   2.92797  3.55938  0.12031  3.46113     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     33   3.06055  2.57727  3.10977  0.18327     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     34   3.06055  2.57727  3.10977  0.18327     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     35   3.40094  0.13411  3.45175  2.80552     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     36   2.92797  3.55938  0.12031  3.46113     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     37   0.14563  3.35238  2.78377  3.25141     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     38   3.06055  2.57727  3.10977  0.18327     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     39   2.92797  3.55938  0.12031  3.46113     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     40   0.14563  3.35238  2.78377  3.25141     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     41   0.14563  3.35238  2.78377  3.25141     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     42   2.92797  3.55938  0.12031  3.46113     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     43   0.14563  3.35238  2.78377  3.25141     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     44   0.14563  3.35238  2.78377  3.25141     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99578  3.99578  1.46634  0.26236  1.09861  0.40547
     45   3.40094  0.13411  3.45175  2.80552     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01892  3.97721        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_threel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:15:05 2012
NSEQ  25
EFFN  4.135132
CKSUM 2110423648
STATS LOCAL MSV       -6.6693  0.71932
STATS LOCAL VITERBI   -7.6515  0.71932
STATS LOCAL FORWARD   -4.2746  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.45592  1.47226  1.24572  1.38760
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  0.00000        *
      1   2.75651  1.52436  2.81926  0.41691      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      2   2.63176  0.58501  2.70182  1.19117      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      3   0.11510  3.60848  2.94886  3.53248      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      4   2.65467  2.97644  0.26677  2.18167      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      5   2.58086  1.11840  2.64957  0.64092      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      6   3.69346  0.10301  3.73121  3.01519      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      7   3.10767  2.20433  3.15658  0.22015      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      8   3.32527  2.74533  3.36417  0.14477      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
      9   0.17998  3.25332  2.79731  2.73200      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     10   2.70488  0.49385  2.77382  1.34543     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     11   3.69346  0.10301  3.73121  3.01519     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     12   3.10093  3.81394  0.09513  3.74311     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     13   3.10093  3.81394  0.09513  3.74311     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     14   3.32527  2.74533  3.36417  0.14477     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     15   3.10093  3.81394  0.09513  3.74311     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     16   3.10093  3.81394  0.09513  3.74311     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     17   0.11510  3.60848  2.94886  3.53248     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     18   3.32527  2.74533  3.36417  0.14477     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     19   3.69346  0.10301  3.73121  3.01519     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     20   0.11510  3.60848  2.94886  3.53248     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     21   3.69346  0.10301  3.73121  3.01519     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     22   3.32527  2.74533  3.36417  0.14477     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     23   2.10833  0.30601  2.83467  2.48356     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     24   3.10093  3.81394  0.09513  3.74311     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     25   3.10093  3.81394  0.09513  3.74311     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     26   2.65455  1.31607  2.72074  0.51809     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     27   3.32527  2.74533  3.36417  0.14477     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     28   3.69346  0.10301  3.73121  3.01519     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     29   3.10093  3.81394  0.09513  3.74311     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     30   3.32527  2.74533  3.36417  0.14477     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     31   3.10093  3.81394  0.09513  3.74311     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     32   3.10093  3.81394  0.09513  3.74311     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     33   0.11510  3.60848  2.94886  3.53248     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     34   3.32527  2.74533  3.36417  0.14477     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     35   3.69346  0.10301  3.73121  3.01519     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     36   3.10093  3.81394  0.09513  3.74311     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     37   0.11510  3.60848  2.94886  3.53248     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     38   3.32527  2.74533  3.36417  0.14477     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     39   3.10093  3.81394  0.09513  3.74311     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     40   0.11510  3.60848  2.94886  3.53248     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     41   0.11510  3.60848  2.94886  3.53248     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     42   3.10093  3.81394  0.09513  3.74311     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     43   0.11510  3.60848  2.94886  3.53248     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     44   0.11510  3.60848  2.94886  3.53248     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03208  4.14870  4.14870  1.46634  0.26236  1.09861  0.40547
     45   3.69346  0.10301  3.73121  3.01519     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01617  4.13278        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:22:32 2012
NSEQ  7
EFFN  3.168457
CKSUM 1185329725
STATS LOCAL MSV       -8.1739  0.71932
STATS LOCAL VITERBI   -7.6654  0.71932
STATS LOCAL FORWARD   -4.0933  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54876  1.39734  1.14224  1.50899
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  0.00000        *
      1   3.03775  2.56273  3.08783  0.18710      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      2   3.03775  2.56273  3.08783  0.18710      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      3   0.14877  3.32959  2.76888  3.22651      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      4   3.37463  0.13741  3.42653  2.78623      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      5   3.37463  0.13741  3.42653  2.78623      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      6   3.37463  0.13741  3.42653  2.78623      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      7   3.03775  2.56273  3.08783  0.18710      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      8   2.91185  3.53609  0.12297  3.43546      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
      9   2.91185  3.53609  0.12297  3.43546      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     10   0.14877  3.32959  2.76888  3.22651     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     11   3.37463  0.13741  3.42653  2.78623     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     12   2.91185  3.53609  0.12297  3.43546     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     13   2.91185  3.53609  0.12297  3.43546     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     14   3.03775  2.56273  3.08783  0.18710     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     15   2.91185  3.53609  0.12297  3.43546     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     16   2.91185  3.53609  0.12297  3.43546     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     17   0.14877  3.32959  2.76888  3.22651     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     18   3.03775  2.56273  3.08783  0.18710     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     19   3.37463  0.13741  3.42653  2.78623     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     20   0.14877  3.32959  2.76888  3.22651     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     21   3.37463  0.13741  3.42653  2.78623     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     22   3.03775  2.56273  3.08783  0.18710     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     23   3.03775  2.56273  3.08783  0.18710     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     24   2.91185  3.53609  0.12297  3.43546     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     25   2.91185  3.53609  0.12297  3.43546     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     26   3.37463  0.13741  3.42653  2.78623     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     27   3.03775  2.56273  3.08783  0.18710     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     28   3.37463  0.13741  3.42653  2.78623     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     29   2.91185  3.53609  0.12297  3.43546     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     30   3.37463  0.13741  3.42653  2.78623     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     31   2.91185  3.53609  0.12297  3.43546     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     32   2.91185  3.53609  0.12297  3.43546     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     33   2.91185  3.53609  0.12297  3.43546     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     34   3.03775  2.56273  3.08783  0.18710     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     35   3.37463  0.13741  3.42653  2.78623     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     36   2.91185  3.53609  0.12297  3.43546     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     37   0.14877  3.32959  2.76888  3.22651     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     38   3.03775  2.56273  3.08783  0.18710     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     39   2.91185  3.53609  0.12297  3.43546     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     40   0.14877  3.32959  2.76888  3.22651     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     41   0.14877  3.32959  2.76888  3.22651     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     42   2.91185  3.53609  0.12297  3.43546     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     43   0.14877  3.32959  2.76888  3.22651     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     44   0.14877  3.32959  2.76888  3.22651     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03797  3.98313  3.98313  1.46634  0.26236  1.09861  0.40547
     45   3.37463  0.13741  3.42653  2.78623     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96432        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twenty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:13 2012
NSEQ  2
EFFN  2.000000
CKSUM 718889203
STATS LOCAL MSV       -7.4369  0.72883
STATS LOCAL VITERBI   -8.3333  0.72883
STATS LOCAL FORWARD   -3.3820  0.72883
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.43056  1.37707  1.25719  1.49587
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.15554  1.00938  2.23102  0.88601     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   1.03732  1.95876  1.96551  1.00928     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.53331  3.02441  0.20344  2.88069     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:10 2012
NSEQ  4
EFFN  3.199219
CKSUM 997121201
STATS LOCAL MSV       -8.1142  0.71933
STATS LOCAL VITERBI   -7.6231  0.71933
STATS LOCAL FORWARD   -4.2369  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21776  1.39643  1.37797  1.58700
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  0.00000        *
      1   3.38655  0.13590  3.43796  2.79498      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      2   0.14734  3.33991  2.77563  3.23778      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      3   0.14734  3.33991  2.77563  3.23778      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      4   3.38655  0.13590  3.43796  2.79498      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      5   3.38655  0.13590  3.43796  2.79498      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      6   0.14734  3.33991  2.77563  3.23778      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      7   3.04806  2.56931  3.09775  0.18535      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      8   2.91917  3.54665  0.12176  3.44709      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
      9   0.14734  3.33991  2.77563  3.23778      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     10   0.14734  3.33991  2.77563  3.23778     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     11   3.38655  0.13590  3.43796  2.79498     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     12   0.14734  3.33991  2.77563  3.23778     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     13   2.91917  3.54665  0.12176  3.44709     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     14   3.04806  2.56931  3.09775  0.18535     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     15   2.91917  3.54665  0.12176  3.44709     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     16   2.91917  3.54665  0.12176  3.44709     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     17   0.14734  3.33991  2.77563  3.23778     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     18   3.04806  2.56931  3.09775  0.18535     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     19   3.38655  0.13590  3.43796  2.79498     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     20   0.14734  3.33991  2.77563  3.23778     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     21   3.38655  0.13590  3.43796  2.79498     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     22   3.04806  2.56931  3.09775  0.18535     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     23   3.38655  0.13590  3.43796  2.79498     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     24   2.91917  3.54665  0.12176  3.44709     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     25   2.91917  3.54665  0.12176  3.44709     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     26   3.38655  0.13590  3.43796  2.79498     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     27   3.04806  2.56931  3.09775  0.18535     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     28   3.38655  0.13590  3.43796  2.79498     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     29   2.91917  3.54665  0.12176  3.44709     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     30   3.04806  2.56931  3.09775  0.18535     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     31   2.91917  3.54665  0.12176  3.44709     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     32   3.04806  2.56931  3.09775  0.18535     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     33   0.14734  3.33991  2.77563  3.23778     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     34   3.04806  2.56931  3.09775  0.18535     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     35   3.38655  0.13590  3.43796  2.79498     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     36   2.91917  3.54665  0.12176  3.44709     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     37   0.14734  3.33991  2.77563  3.23778     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     38   3.04806  2.56931  3.09775  0.18535     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     39   2.91917  3.54665  0.12176  3.44709     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     40   0.14734  3.33991  2.77563  3.23778     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     41   0.14734  3.33991  2.77563  3.23778     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     42   2.91917  3.54665  0.12176  3.44709     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     43   0.14734  3.33991  2.77563  3.23778     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     44   0.14734  3.33991  2.77563  3.23778     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98884  3.98884  1.46634  0.26236  1.09861  0.40547
     45   3.38655  0.13590  3.43796  2.79498     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.97014        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:58 2012
NSEQ  7
EFFN  3.257324
CKSUM 2784065201
STATS LOCAL MSV       -8.1117  0.71933
STATS LOCAL VITERBI   -7.4429  0.71933
STATS LOCAL FORWARD   -4.2246  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33671  1.45799  1.38014  1.37419
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  0.00000        *
      1   3.40872  0.13316  3.45920  2.81121      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      2   0.14472  3.35911  2.78816  3.25878      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      3   0.14472  3.35911  2.78816  3.25878      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      4   3.40872  0.13316  3.45920  2.81121      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      5   3.06731  2.58158  3.11627  0.18215      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      6   3.06731  2.58158  3.11627  0.18215      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      7   3.06731  2.58158  3.11627  0.18215      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      8   3.06731  2.58158  3.11627  0.18215      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      9   0.14472  3.35911  2.78816  3.25878      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     10   0.14472  3.35911  2.78816  3.25878     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     11   3.40872  0.13316  3.45920  2.81121     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     12   2.93271  3.56625  0.11954  3.46869     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     13   2.93271  3.56625  0.11954  3.46869     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     14   3.06731  2.58158  3.11627  0.18215     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     15   2.93271  3.56625  0.11954  3.46869     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     16   2.93271  3.56625  0.11954  3.46869     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     17   0.14472  3.35911  2.78816  3.25878     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     18   3.06731  2.58158  3.11627  0.18215     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     19   3.40872  0.13316  3.45920  2.81121     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     20   3.06731  2.58158  3.11627  0.18215     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     21   3.40872  0.13316  3.45920  2.81121     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     22   3.06731  2.58158  3.11627  0.18215     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     23   0.14472  3.35911  2.78816  3.25878     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     24   2.93271  3.56625  0.11954  3.46869     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     25   2.93271  3.56625  0.11954  3.46869     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     26   3.40872  0.13316  3.45920  2.81121     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     27   3.06731  2.58158  3.11627  0.18215     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     28   3.40872  0.13316  3.45920  2.81121     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     29   2.93271  3.56625  0.11954  3.46869     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     30   3.40872  0.13316  3.45920  2.81121     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     31   2.93271  3.56625  0.11954  3.46869     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     32   3.06731  2.58158  3.11627  0.18215     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     33   0.14472  3.35911  2.78816  3.25878     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     34   3.06731  2.58158  3.11627  0.18215     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     35   3.40872  0.13316  3.45920  2.81121     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     36   2.93271  3.56625  0.11954  3.46869     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     37   0.14472  3.35911  2.78816  3.25878     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     38   3.06731  2.58158  3.11627  0.18215     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     39   2.93271  3.56625  0.11954  3.46869     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     40   0.14472  3.35911  2.78816  3.25878     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     41   0.14472  3.35911  2.78816  3.25878     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     42   2.93271  3.56625  0.11954  3.46869     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     43   0.14472  3.35911  2.78816  3.25878     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     44   0.14472  3.35911  2.78816  3.25878     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     45   3.40872  0.13316  3.45920  2.81121     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01884  3.98105        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:51 2012
NSEQ  2
EFFN  2.000000
CKSUM 4071785967
STATS LOCAL MSV       -7.3852  0.72798
STATS LOCAL VITERBI   -8.0260  0.72798
STATS LOCAL FORWARD   -3.6008  0.72798
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52069  1.33872  1.32202  1.37570
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.81865  0.23582  2.88868  2.35662     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:28:20 2012
NSEQ  4
EFFN  3.238281
CKSUM 1537853273
STATS LOCAL MSV       -8.1019  0.71933
STATS LOCAL VITERBI   -7.6129  0.71933
STATS LOCAL FORWARD   -4.0493  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21502  1.62390  1.30909  1.44351
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
      1   3.06103  2.57758  3.11024  0.18319      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      2   3.40150  0.13404  3.45229  2.80593      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      3   0.14557  3.35286  2.78409  3.25194      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      4   3.40150  0.13404  3.45229  2.80593      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      5   0.14557  3.35286  2.78409  3.25194      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      6   0.14557  3.35286  2.78409  3.25194      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      7   3.06103  2.57758  3.11024  0.18319      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      8   3.06103  2.57758  3.11024  0.18319      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      9   0.14557  3.35286  2.78409  3.25194      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     10   0.14557  3.35286  2.78409  3.25194     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     11   3.40150  0.13404  3.45229  2.80593     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     12   2.92831  3.55987  0.12026  3.46167     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     13   2.92831  3.55987  0.12026  3.46167     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     14   3.06103  2.57758  3.11024  0.18319     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     15   2.92831  3.55987  0.12026  3.46167     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     16   2.92831  3.55987  0.12026  3.46167     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     17   0.14557  3.35286  2.78409  3.25194     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     18   3.06103  2.57758  3.11024  0.18319     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     19   3.40150  0.13404  3.45229  2.80593     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     20   0.14557  3.35286  2.78409  3.25194     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     21   3.40150  0.13404  3.45229  2.80593     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     22   3.06103  2.57758  3.11024  0.18319     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     23   3.06103  2.57758  3.11024  0.18319     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     24   2.92831  3.55987  0.12026  3.46167     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     25   2.92831  3.55987  0.12026  3.46167     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     26   2.92831  3.55987  0.12026  3.46167     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     27   3.06103  2.57758  3.11024  0.18319     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     28   3.40150  0.13404  3.45229  2.80593     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     29   2.92831  3.55987  0.12026  3.46167     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     30   3.06103  2.57758  3.11024  0.18319     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     31   0.14557  3.35286  2.78409  3.25194     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     32   2.92831  3.55987  0.12026  3.46167     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     33   0.14557  3.35286  2.78409  3.25194     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     34   3.06103  2.57758  3.11024  0.18319     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     35   3.40150  0.13404  3.45229  2.80593     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     36   2.92831  3.55987  0.12026  3.46167     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     37   0.14557  3.35286  2.78409  3.25194     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     38   3.06103  2.57758  3.11024  0.18319     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     39   2.92831  3.55987  0.12026  3.46167     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     40   0.14557  3.35286  2.78409  3.25194     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     41   0.14557  3.35286  2.78409  3.25194     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     42   2.92831  3.55987  0.12026  3.46167     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     43   0.14557  3.35286  2.78409  3.25194     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     44   0.14557  3.35286  2.78409  3.25194     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     45   3.40150  0.13404  3.45229  2.80593     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:19 2012
NSEQ  3
EFFN  3.000000
CKSUM 2207381587
STATS LOCAL MSV       -7.9442  0.71991
STATS LOCAL VITERBI   -7.7532  0.71991
STATS LOCAL FORWARD   -3.8730  0.71991
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.54730  1.33345  1.14506  1.58275
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.86982  3.47591  0.13017  3.36931      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   0.15719  3.27118  2.73043  3.16274      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.86982  3.47591  0.13017  3.36931     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   3.30705  0.14631  3.36166  2.73626     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.97980  2.52563  3.03204  0.19727     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   3.30705  0.14631  3.36166  2.73626     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   0.15719  3.27118  2.73043  3.16274     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.86982  3.47591  0.13017  3.36931     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   0.15719  3.27118  2.73043  3.16274     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.86982  3.47591  0.13017  3.36931     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   3.30705  0.14631  3.36166  2.73626     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:19 2012
NSEQ  44
EFFN  3.316650
CKSUM 3195064440
STATS LOCAL MSV       -8.1963  0.71932
STATS LOCAL VITERBI   -7.7078  0.71932
STATS LOCAL FORWARD   -4.2345  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.42255  1.20259  1.37985  1.57568
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  0.00000        *
      1   3.43088  0.13047  3.48043  2.82738      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      2   0.14215  3.37833  2.80067  3.27981      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      3   0.14215  3.37833  2.80067  3.27981      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      4   3.43088  0.13047  3.48043  2.82738      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      5   3.08666  2.59390  3.13489  0.17899      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      6   3.08666  2.59390  3.13489  0.17899      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      7   3.43088  0.13047  3.48043  2.82738      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      8   3.08666  2.59390  3.13489  0.17899      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
      9   0.14215  3.37833  2.80067  3.27981      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     10   0.14215  3.37833  2.80067  3.27981     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     11   3.43088  0.13047  3.48043  2.82738     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     12   2.94618  3.58579  0.11737  3.49026     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     13   2.94618  3.58579  0.11737  3.49026     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     14   3.08666  2.59390  3.13489  0.17899     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     15   2.94618  3.58579  0.11737  3.49026     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     16   2.94618  3.58579  0.11737  3.49026     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     17   0.14215  3.37833  2.80067  3.27981     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     18   3.43088  0.13047  3.48043  2.82738     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     19   3.43088  0.13047  3.48043  2.82738     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     20   3.43088  0.13047  3.48043  2.82738     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     21   3.43088  0.13047  3.48043  2.82738     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     22   3.08666  2.59390  3.13489  0.17899     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     23   3.43088  0.13047  3.48043  2.82738     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     24   2.94618  3.58579  0.11737  3.49026     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     25   2.94618  3.58579  0.11737  3.49026     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     26   3.43088  0.13047  3.48043  2.82738     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     27   3.08666  2.59390  3.13489  0.17899     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     28   3.43088  0.13047  3.48043  2.82738     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     29   2.23374  3.19285  0.21615  3.07464     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     30   3.08666  2.59390  3.13489  0.17899     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     31   2.94618  3.58579  0.11737  3.49026     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     32   3.43088  0.13047  3.48043  2.82738     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     33   0.45634  2.68837  1.51211  2.55144     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     34   3.08666  2.59390  3.13489  0.17899     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     35   3.43088  0.13047  3.48043  2.82738     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     36   2.94618  3.58579  0.11737  3.49026     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     37   0.14215  3.37833  2.80067  3.27981     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     38   3.08666  2.59390  3.13489  0.17899     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     39   2.94618  3.58579  0.11737  3.49026     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     40   0.14215  3.37833  2.80067  3.27981     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     41   0.14215  3.37833  2.80067  3.27981     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     42   2.94618  3.58579  0.11737  3.49026     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     43   0.14215  3.37833  2.80067  3.27981     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     44   0.14215  3.37833  2.80067  3.27981     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03693  4.01036  4.01036  1.46634  0.26236  1.09861  0.40547
     45   3.43088  0.13047  3.48043  2.82738     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99206        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:24 2012
NSEQ  5
EFFN  3.178711
CKSUM 557866279
STATS LOCAL MSV       -8.2628  0.71932
STATS LOCAL VITERBI   -7.7354  0.71932
STATS LOCAL FORWARD   -4.3627  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40535  1.26751  1.31792  1.58234
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  0.00000        *
      1   3.37862  0.13690  3.43035  2.78916      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      2   0.14829  3.33304  2.77114  3.23028      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      3   0.14829  3.33304  2.77114  3.23028      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      4   3.37862  0.13690  3.43035  2.78916      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      5   3.04119  2.56493  3.09115  0.18651      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      6   3.04119  2.56493  3.09115  0.18651      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      7   3.37862  0.13690  3.43035  2.78916      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      8   3.04119  2.56493  3.09115  0.18651      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
      9   0.14829  3.33304  2.77114  3.23028      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     10   0.14829  3.33304  2.77114  3.23028     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     11   3.37862  0.13690  3.43035  2.78916     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     12   2.91430  3.53962  0.12257  3.43936     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     13   2.91430  3.53962  0.12257  3.43936     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     14   3.04119  2.56493  3.09115  0.18651     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     15   2.91430  3.53962  0.12257  3.43936     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     16   2.91430  3.53962  0.12257  3.43936     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     17   0.14829  3.33304  2.77114  3.23028     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     18   3.37862  0.13690  3.43035  2.78916     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     19   0.14829  3.33304  2.77114  3.23028     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     20   3.37862  0.13690  3.43035  2.78916     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     21   3.37862  0.13690  3.43035  2.78916     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     22   3.04119  2.56493  3.09115  0.18651     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     23   3.37862  0.13690  3.43035  2.78916     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     24   2.91430  3.53962  0.12257  3.43936     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     25   2.91430  3.53962  0.12257  3.43936     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     26   3.37862  0.13690  3.43035  2.78916     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     27   3.04119  2.56493  3.09115  0.18651     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     28   3.37862  0.13690  3.43035  2.78916     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     29   2.91430  3.53962  0.12257  3.43936     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     30   3.04119  2.56493  3.09115  0.18651     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     31   2.91430  3.53962  0.12257  3.43936     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     32   3.04119  2.56493  3.09115  0.18651     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     33   0.14829  3.33304  2.77114  3.23028     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     34   3.37862  0.13690  3.43035  2.78916     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     35   3.37862  0.13690  3.43035  2.78916     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     36   2.91430  3.53962  0.12257  3.43936     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     37   0.14829  3.33304  2.77114  3.23028     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     38   3.04119  2.56493  3.09115  0.18651     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     39   2.91430  3.53962  0.12257  3.43936     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     40   0.14829  3.33304  2.77114  3.23028     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     41   0.14829  3.33304  2.77114  3.23028     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     42   2.91430  3.53962  0.12257  3.43936     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     43   0.14829  3.33304  2.77114  3.23028     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     44   2.91430  3.53962  0.12257  3.43936     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03789  3.98503  3.98503  1.46634  0.26236  1.09861  0.40547
     45   3.37862  0.13690  3.43035  2.78916     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01913  3.96627        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:29 2012
NSEQ  4
EFFN  3.363281
CKSUM 862441232
STATS LOCAL MSV       -8.0904  0.71931
STATS LOCAL VITERBI   -7.5210  0.71931
STATS LOCAL FORWARD   -4.2499  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.44563  1.38319  1.31183  1.40936
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
      1   3.44798  0.12845  3.49681  2.83981      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      2   0.14020  3.39317  2.81030  3.29606      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      3   0.14020  3.39317  2.81030  3.29606      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      4   3.44798  0.12845  3.49681  2.83981      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      5   3.10166  2.60344  3.14932  0.17659      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      6   3.10166  2.60344  3.14932  0.17659      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      7   3.44798  0.12845  3.49681  2.83981      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      8   3.10166  2.60344  3.14932  0.17659      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      9   2.95651  3.60084  0.11574  3.50687      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     10   0.14020  3.39317  2.81030  3.29606     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     11   3.44798  0.12845  3.49681  2.83981     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     12   2.95651  3.60084  0.11574  3.50687     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     13   2.95651  3.60084  0.11574  3.50687     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     14   3.10166  2.60344  3.14932  0.17659     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     15   2.95651  3.60084  0.11574  3.50687     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     16   2.95651  3.60084  0.11574  3.50687     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     17   0.14020  3.39317  2.81030  3.29606     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     18   3.10166  2.60344  3.14932  0.17659     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     19   3.44798  0.12845  3.49681  2.83981     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     20   3.10166  2.60344  3.14932  0.17659     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     21   3.44798  0.12845  3.49681  2.83981     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     22   3.10166  2.60344  3.14932  0.17659     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     23   0.97344  2.14787  2.16342  0.94018     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     24   2.95651  3.60084  0.11574  3.50687     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     25   2.95651  3.60084  0.11574  3.50687     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     26   3.44798  0.12845  3.49681  2.83981     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     27   3.10166  2.60344  3.14932  0.17659     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     28   3.44798  0.12845  3.49681  2.83981     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     29   2.95651  3.60084  0.11574  3.50687     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     30   3.10166  2.60344  3.14932  0.17659     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     31   2.95651  3.60084  0.11574  3.50687     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     32   3.44798  0.12845  3.49681  2.83981     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     33   0.14020  3.39317  2.81030  3.29606     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     34   3.10166  2.60344  3.14932  0.17659     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     35   3.44798  0.12845  3.49681  2.83981     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     36   2.95651  3.60084  0.11574  3.50687     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     37   0.14020  3.39317  2.81030  3.29606     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     38   3.10166  2.60344  3.14932  0.17659     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     39   2.95651  3.60084  0.11574  3.50687     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     40   0.14020  3.39317  2.81030  3.29606     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     41   0.14020  3.39317  2.81030  3.29606     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     42   2.95651  3.60084  0.11574  3.50687     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     43   0.14020  3.39317  2.81030  3.29606     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     44   0.14020  3.39317  2.81030  3.29606     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     45   3.44798  0.12845  3.49681  2.83981     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevend_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:33 2012
NSEQ  4
EFFN  3.355469
CKSUM 3256074058
STATS LOCAL MSV       -7.9928  0.71933
STATS LOCAL VITERBI   -7.4659  0.71933
STATS LOCAL FORWARD   -4.2898  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40045  1.36100  1.37985  1.40449
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  0.00000        *
      1   3.44514  0.12878  3.49408  2.83774      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      2   0.14052  3.39070  2.80870  3.29336      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      3   0.14052  3.39070  2.80870  3.29336      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      4   3.44514  0.12878  3.49408  2.83774      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      5   3.09916  2.60185  3.14691  0.17699      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      6   3.09916  2.60185  3.14691  0.17699      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      7   3.44514  0.12878  3.49408  2.83774      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      8   2.41122  0.95644  2.48325  0.81517      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
      9   0.14052  3.39070  2.80870  3.29336      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     10   0.14052  3.39070  2.80870  3.29336     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     11   3.44514  0.12878  3.49408  2.83774     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     12   2.95480  3.59834  0.11601  3.50411     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     13   2.95480  3.59834  0.11601  3.50411     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     14   3.09916  2.60185  3.14691  0.17699     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     15   2.95480  3.59834  0.11601  3.50411     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     16   2.95480  3.59834  0.11601  3.50411     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     17   0.14052  3.39070  2.80870  3.29336     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     18   3.09916  2.60185  3.14691  0.17699     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     19   3.44514  0.12878  3.49408  2.83774     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     20   3.09916  2.60185  3.14691  0.17699     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     21   3.44514  0.12878  3.49408  2.83774     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     22   3.09916  2.60185  3.14691  0.17699     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     23   3.44514  0.12878  3.49408  2.83774     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     24   2.95480  3.59834  0.11601  3.50411     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     25   2.95480  3.59834  0.11601  3.50411     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     26   3.44514  0.12878  3.49408  2.83774     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     27   3.09916  2.60185  3.14691  0.17699     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     28   3.09916  2.60185  3.14691  0.17699     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     29   2.95480  3.59834  0.11601  3.50411     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     30   3.09916  2.60185  3.14691  0.17699     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     31   2.95480  3.59834  0.11601  3.50411     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     32   3.44514  0.12878  3.49408  2.83774     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     33   0.14052  3.39070  2.80870  3.29336     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     34   3.09916  2.60185  3.14691  0.17699     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     35   3.44514  0.12878  3.49408  2.83774     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     36   2.95480  3.59834  0.11601  3.50411     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     37   0.14052  3.39070  2.80870  3.29336     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     38   3.09916  2.60185  3.14691  0.17699     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     39   2.95480  3.59834  0.11601  3.50411     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     40   0.14052  3.39070  2.80870  3.29336     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     41   0.14052  3.39070  2.80870  3.29336     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     42   2.95480  3.59834  0.11601  3.50411     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     43   0.14052  3.39070  2.80870  3.29336     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     44   0.14052  3.39070  2.80870  3.29336     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01737  4.01737  1.46634  0.26236  1.09861  0.40547
     45   3.44514  0.12878  3.49408  2.83774     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01850  3.99920        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:39 2012
NSEQ  7
EFFN  3.195801
CKSUM 3140450226
STATS LOCAL MSV       -8.0348  0.71932
STATS LOCAL VITERBI   -7.6161  0.71932
STATS LOCAL FORWARD   -4.0740  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27701  1.32955  1.38039  1.58448
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  0.00000        *
      1   3.38523  0.13607  3.43670  2.79401      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      2   0.14750  3.33877  2.77489  3.23653      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      3   0.14750  3.33877  2.77489  3.23653      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      4   3.38523  0.13607  3.43670  2.79401      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      5   3.04692  2.56858  3.09666  0.18555      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      6   3.38523  0.13607  3.43670  2.79401      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      7   0.14750  3.33877  2.77489  3.23653      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      8   2.91836  3.54548  0.12189  3.44581      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
      9   0.14750  3.33877  2.77489  3.23653      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     10   0.14750  3.33877  2.77489  3.23653     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     11   3.38523  0.13607  3.43670  2.79401     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     12   2.91836  3.54548  0.12189  3.44581     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     13   2.91836  3.54548  0.12189  3.44581     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     14   3.04692  2.56858  3.09666  0.18555     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     15   2.91836  3.54548  0.12189  3.44581     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     16   2.91836  3.54548  0.12189  3.44581     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     17   0.14750  3.33877  2.77489  3.23653     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     18   3.04692  2.56858  3.09666  0.18555     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     19   3.38523  0.13607  3.43670  2.79401     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     20   3.04692  2.56858  3.09666  0.18555     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     21   3.38523  0.13607  3.43670  2.79401     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     22   3.04692  2.56858  3.09666  0.18555     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     23   3.04692  2.56858  3.09666  0.18555     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     24   2.91836  3.54548  0.12189  3.44581     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     25   2.91836  3.54548  0.12189  3.44581     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     26   3.38523  0.13607  3.43670  2.79401     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     27   3.04692  2.56858  3.09666  0.18555     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     28   3.38523  0.13607  3.43670  2.79401     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     29   0.14750  3.33877  2.77489  3.23653     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     30   3.38523  0.13607  3.43670  2.79401     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     31   2.91836  3.54548  0.12189  3.44581     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     32   3.38523  0.13607  3.43670  2.79401     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     33   0.14750  3.33877  2.77489  3.23653     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     34   3.04692  2.56858  3.09666  0.18555     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     35   3.38523  0.13607  3.43670  2.79401     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     36   2.91836  3.54548  0.12189  3.44581     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     37   0.14750  3.33877  2.77489  3.23653     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     38   3.04692  2.56858  3.09666  0.18555     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     39   2.91836  3.54548  0.12189  3.44581     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     40   0.14750  3.33877  2.77489  3.23653     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     41   0.14750  3.33877  2.77489  3.23653     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     42   2.91836  3.54548  0.12189  3.44581     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     43   0.14750  3.33877  2.77489  3.23653     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     44   0.14750  3.33877  2.77489  3.23653     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03777  3.98821  3.98821  1.46634  0.26236  1.09861  0.40547
     45   3.38523  0.13607  3.43670  2.79401     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01906  3.96950        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysevenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:48 2012
NSEQ  2
EFFN  2.000000
CKSUM 2853933875
STATS LOCAL MSV       -7.5713  0.72765
STATS LOCAL VITERBI   -8.1497  0.72765
STATS LOCAL FORWARD   -3.4317  0.72765
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39938  1.29426  1.32042  1.55057
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   0.23862  2.84929  2.43386  2.70756     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentyseveng_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:53 2012
NSEQ  2
EFFN  2.000000
CKSUM 2803901569
STATS LOCAL MSV       -7.6218  0.72807
STATS LOCAL VITERBI   -8.1462  0.72807
STATS LOCAL FORWARD   -3.4806  0.72807
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39704  1.39574  1.37569  1.37692
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.57915  2.25909  2.64442  0.28946      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.53331  3.02441  0.20344  2.88069      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.81865  0.23582  2.88868  2.35662     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   0.23862  2.84929  2.43386  2.70756     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:27:08 2012
NSEQ  253
EFFN  4.026474
CKSUM 1317147062
STATS LOCAL MSV       -7.2295  0.71931
STATS LOCAL VITERBI   -7.5384  0.71931
STATS LOCAL FORWARD   -4.2378  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39703  1.43388  1.38321  1.33365
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  0.00000        *
      1   3.40850  0.15906  3.45793  2.49536      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      2   0.11797  3.58132  2.93141  3.50261      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      3   0.11797  3.58132  2.93141  3.50261      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      4   3.59353  0.11910  3.63549  2.84027      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      5   3.29641  2.72699  3.33646  0.14849      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      6   3.22497  2.53341  3.26815  0.17105      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      7   3.10291  2.24632  3.15164  0.21504      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      8   2.85111  2.18143  3.02339  0.24756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
      9   0.56245  2.70702  1.24874  2.56935      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     10   0.12854  3.53848  2.81268  3.45705     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     11   3.66283  0.10585  3.70202  2.99357     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     12   3.08319  3.78761  0.09744  3.71385     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     13   3.08319  3.78761  0.09744  3.71385     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     14   3.25561  2.61343  3.29740  0.16113     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     15   3.08319  3.78761  0.09744  3.71385     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     16   3.08319  3.78761  0.09744  3.71385     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     17   0.11797  3.58132  2.93141  3.50261     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     18   3.29641  2.72699  3.33646  0.14849     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     19   3.66283  0.10585  3.70202  2.99357     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     20   3.29641  2.72699  3.33646  0.14849     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     21   3.66283  0.10585  3.70202  2.99357     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     22   3.29641  2.72699  3.33646  0.14849     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     23   2.09673  2.47384  2.75948  0.31532     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     24   3.08319  3.78761  0.09744  3.71385     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     25   3.08319  3.78761  0.09744  3.71385     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     26   3.66283  0.10585  3.70202  2.99357     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     27   3.29641  2.72699  3.33646  0.14849     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     28   3.66283  0.10585  3.70202  2.99357     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     29   1.22589  2.72482  0.56994  2.58517     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     30   2.57847  1.17628  2.64686  0.60731     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     31   3.03660  3.50808  0.11130  3.59791     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     32   2.87089  0.28327  2.66540  2.11638     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     33   0.11797  3.58132  2.93141  3.50261     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     34   3.29641  2.72699  3.33646  0.14849     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     35   3.66283  0.10585  3.70202  2.99357     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     36   3.08319  3.78761  0.09744  3.71385     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     37   0.11797  3.58132  2.93141  3.50261     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     38   3.29641  2.72699  3.33646  0.14849     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     39   3.08319  3.78761  0.09744  3.71385     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     40   0.11797  3.58132  2.93141  3.50261     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     41   0.14845  3.13087  2.85707  3.30125     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     42   3.08319  3.78761  0.09744  3.71385     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     43   0.11797  3.58132  2.93141  3.50261     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     44   0.11797  3.58132  2.93141  3.50261     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03265  4.13140  4.13140  1.46634  0.26236  1.09861  0.40547
     45   3.66283  0.10585  3.70202  2.99357     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01646  4.11521        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:34 2012
NSEQ  2
EFFN  2.000000
CKSUM 2259417781
STATS LOCAL MSV       -7.6133  0.72781
STATS LOCAL VITERBI   -8.2844  0.72781
STATS LOCAL FORWARD   -3.9462  0.72781
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33950  1.52792  1.26007  1.43800
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   0.23862  2.84929  2.43386  2.70756      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.81865  0.23582  2.88868  2.35662     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.53331  3.02441  0.20344  2.88069     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.57915  2.25909  2.64442  0.28946     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   0.23862  2.84929  2.43386  2.70756     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.81865  0.23582  2.88868  2.35662     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   0.23862  2.84929  2.43386  2.70756     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.53331  3.02441  0.20344  2.88069     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   0.23862  2.84929  2.43386  2.70756     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.53331  3.02441  0.20344  2.88069     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   0.23862  2.84929  2.43386  2.70756     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.81865  0.23582  2.88868  2.35662     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentythreeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:41 2012
NSEQ  43
EFFN  3.760925
CKSUM 3682624133
STATS LOCAL MSV       -7.3174  0.71933
STATS LOCAL VITERBI   -7.6672  0.71933
STATS LOCAL FORWARD   -4.3209  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31564  1.59503  1.29739  1.36433
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  0.00000        *
      1   1.83504  0.73322  2.26296  1.36261      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      2   3.22243  2.68004  3.26539  0.15853      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      3   0.12580  3.51085  2.88617  3.42515      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      4   3.03658  3.71852  0.10380  3.63715      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      5   3.58284  0.11369  3.62571  2.93680      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      6   2.89860  1.95235  2.95493  0.28651      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      7   3.22243  2.68004  3.26539  0.15853      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      8   2.49156  0.79132  2.56312  0.94956      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
      9   0.12580  3.51085  2.88617  3.42515      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     10   3.03658  3.71852  0.10380  3.63715     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     11   3.58284  0.11369  3.62571  2.93680     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     12   3.03658  3.71852  0.10380  3.63715     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     13   0.12580  3.51085  2.88617  3.42515     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     14   3.22243  2.68004  3.26539  0.15853     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     15   3.03658  3.71852  0.10380  3.63715     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     16   3.03658  3.71852  0.10380  3.63715     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     17   0.12580  3.51085  2.88617  3.42515     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     18   3.22243  2.68004  3.26539  0.15853     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     19   3.58284  0.11369  3.62571  2.93680     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     20   3.03658  3.71852  0.10380  3.63715     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     21   3.03658  3.71852  0.10380  3.63715     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     22   3.22243  2.68004  3.26539  0.15853     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     23   2.49781  1.06169  2.56808  0.70283     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     24   3.03658  3.71852  0.10380  3.63715     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     25   0.12580  3.51085  2.88617  3.42515     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     26   3.22243  2.68004  3.26539  0.15853     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     27   3.22243  2.68004  3.26539  0.15853     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     28   3.29640  0.15708  3.05878  2.79028     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     29   3.03658  3.71852  0.10380  3.63715     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     30   3.58284  0.11369  3.62571  2.93680     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     31   3.03658  3.71852  0.10380  3.63715     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     32   3.22243  2.68004  3.26539  0.15853     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     33   0.12580  3.51085  2.88617  3.42515     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     34   3.22243  2.68004  3.26539  0.15853     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     35   3.58284  0.11369  3.62571  2.93680     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     36   3.03658  3.71852  0.10380  3.63715     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     37   0.12580  3.51085  2.88617  3.42515     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     38   3.22243  2.68004  3.26539  0.15853     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     39   3.03658  3.71852  0.10380  3.63715     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     40   0.12580  3.51085  2.88617  3.42515     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     41   0.12580  3.51085  2.88617  3.42515     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     42   0.12580  3.51085  2.88617  3.42515     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     43   0.12580  3.51085  2.88617  3.42515     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     44   0.12580  3.51085  2.88617  3.42515     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03413  4.08781  4.08781  1.46634  0.26236  1.09861  0.40547
     45   3.58284  0.11369  3.62571  2.93680     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01721  4.07089        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_twentytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:26:26 2012
NSEQ  7
EFFN  3.243652
CKSUM 1514906456
STATS LOCAL MSV       -7.9402  0.71932
STATS LOCAL VITERBI   -7.5897  0.71932
STATS LOCAL FORWARD   -4.2164  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16403  1.39200  1.52407  1.50791
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  0.00000        *
      1   3.40354  0.13379  3.45424  2.80742      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      2   0.14533  3.35462  2.78524  3.25387      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      3   3.06280  2.57871  3.11194  0.18289      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      4   3.40354  0.13379  3.45424  2.80742      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      5   3.06280  2.57871  3.11194  0.18289      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      6   3.06280  2.57871  3.11194  0.18289      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      7   3.40354  0.13379  3.45424  2.80742      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      8   0.14533  3.35462  2.78524  3.25387      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
      9   0.14533  3.35462  2.78524  3.25387      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     10   2.92956  3.56167  0.12005  3.46366     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     11   3.40354  0.13379  3.45424  2.80742     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     12   2.92956  3.56167  0.12005  3.46366     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     13   2.92956  3.56167  0.12005  3.46366     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     14   3.06280  2.57871  3.11194  0.18289     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     15   2.92956  3.56167  0.12005  3.46366     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     16   2.92956  3.56167  0.12005  3.46366     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     17   0.14533  3.35462  2.78524  3.25387     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     18   3.06280  2.57871  3.11194  0.18289     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     19   3.40354  0.13379  3.45424  2.80742     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     20   0.14533  3.35462  2.78524  3.25387     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     21   3.40354  0.13379  3.45424  2.80742     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     22   3.06280  2.57871  3.11194  0.18289     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     23   3.40354  0.13379  3.45424  2.80742     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     24   2.92956  3.56167  0.12005  3.46366     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     25   0.14533  3.35462  2.78524  3.25387     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     26   0.14533  3.35462  2.78524  3.25387     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     27   3.06280  2.57871  3.11194  0.18289     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     28   3.06280  2.57871  3.11194  0.18289     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     29   0.14533  3.35462  2.78524  3.25387     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     30   3.40354  0.13379  3.45424  2.80742     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     31   3.40354  0.13379  3.45424  2.80742     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     32   0.14533  3.35462  2.78524  3.25387     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     33   0.14533  3.35462  2.78524  3.25387     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     34   3.06280  2.57871  3.11194  0.18289     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     35   3.40354  0.13379  3.45424  2.80742     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     36   2.92956  3.56167  0.12005  3.46366     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     37   0.14533  3.35462  2.78524  3.25387     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     38   3.06280  2.57871  3.11194  0.18289     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     39   2.92956  3.56167  0.12005  3.46366     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     40   0.14533  3.35462  2.78524  3.25387     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     41   0.14533  3.35462  2.78524  3.25387     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     42   2.92956  3.56167  0.12005  3.46366     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     43   0.14533  3.35462  2.78524  3.25387     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     44   0.14533  3.35462  2.78524  3.25387     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03743  3.99704  3.99704  1.46634  0.26236  1.09861  0.40547
     45   3.40354  0.13379  3.45424  2.80742     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01889  3.97849        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Metazoa_58S_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Feb 24 23:13:55 2012
NSEQ  14
EFFN  3.270996
CKSUM 1407752784
STATS LOCAL MSV       -8.0890  0.71933
STATS LOCAL VITERBI   -7.5797  0.71933
STATS LOCAL FORWARD   -4.1354  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39927  1.44999  1.19129  1.53795
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  0.00000        *
      1   2.46772  1.29197  2.53721  0.57731      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      2   3.41386  0.13253  3.46414  2.81497      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      3   0.14412  3.36357  2.79107  3.26366      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      4   3.07179  2.58444  3.12059  0.18141      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      5   3.07179  2.58444  3.12059  0.18141      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      6   3.41386  0.13253  3.46414  2.81497      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      7   3.07179  2.58444  3.12059  0.18141      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      8   0.14412  3.36357  2.79107  3.26366      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
      9   0.14412  3.36357  2.79107  3.26366      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     10   2.93585  3.57079  0.11903  3.47371     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     11   3.41386  0.13253  3.46414  2.81497     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     12   2.93585  3.57079  0.11903  3.47371     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     13   2.93585  3.57079  0.11903  3.47371     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     14   3.07179  2.58444  3.12059  0.18141     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     15   2.93585  3.57079  0.11903  3.47371     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     16   2.93585  3.57079  0.11903  3.47371     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     17   0.14412  3.36357  2.79107  3.26366     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     18   3.07179  2.58444  3.12059  0.18141     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     19   3.41386  0.13253  3.46414  2.81497     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     20   0.14412  3.36357  2.79107  3.26366     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     21   3.41386  0.13253  3.46414  2.81497     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     22   3.07179  2.58444  3.12059  0.18141     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     23   0.14412  3.36357  2.79107  3.26366     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     24   2.93585  3.57079  0.11903  3.47371     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     25   2.93585  3.57079  0.11903  3.47371     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     26   3.41386  0.13253  3.46414  2.81497     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     27   3.07179  2.58444  3.12059  0.18141     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     28   3.41386  0.13253  3.46414  2.81497     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     29   2.93585  3.57079  0.11903  3.47371     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     30   3.41386  0.13253  3.46414  2.81497     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     31   2.93585  3.57079  0.11903  3.47371     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     32   2.93585  3.57079  0.11903  3.47371     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     33   2.93585  3.57079  0.11903  3.47371     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     34   3.07179  2.58444  3.12059  0.18141     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     35   3.41386  0.13253  3.46414  2.81497     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     36   2.93585  3.57079  0.11903  3.47371     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     37   0.14412  3.36357  2.79107  3.26366     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     38   3.07179  2.58444  3.12059  0.18141     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     39   2.93585  3.57079  0.11903  3.47371     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     40   0.14412  3.36357  2.79107  3.26366     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     41   0.14412  3.36357  2.79107  3.26366     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     42   2.93585  3.57079  0.11903  3.47371     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     43   0.14412  3.36357  2.79107  3.26366     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     44   0.14412  3.36357  2.79107  3.26366     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03724  4.00205  4.00205  1.46634  0.26236  1.09861  0.40547
     45   3.41386  0.13253  3.46414  2.81497     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01879  3.98360        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eighta_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:10 2012
NSEQ  23
EFFN  3.433716
CKSUM 4182898010
STATS LOCAL MSV       -7.6415  0.71931
STATS LOCAL VITERBI   -7.6023  0.71931
STATS LOCAL FORWARD   -3.9207  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.12569  1.21534  1.78132  1.55804
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  0.00000        *
      1   3.12398  2.61761  3.17077  0.17308      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      2   3.12398  2.61761  3.17077  0.17308      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      3   0.13737  3.41516  2.82454  3.32015      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      4   3.47328  0.12552  3.52102  2.85815      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      5   2.97172  3.62305  0.11337  3.53141      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      6   0.13737  3.41516  2.82454  3.32015      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      7   3.47328  0.12552  3.52102  2.85815      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      8   3.47328  0.12552  3.52102  2.85815      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
      9   3.12398  2.61761  3.17077  0.17308      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     10   3.47328  0.12552  3.52102  2.85815     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     11   0.13737  3.41516  2.82454  3.32015     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     12   0.13737  3.41516  2.82454  3.32015     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     13   3.47328  0.12552  3.52102  2.85815     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     14   3.12398  2.61761  3.17077  0.17308     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     15   3.47328  0.12552  3.52102  2.85815     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     16   0.13737  3.41516  2.82454  3.32015     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     17   0.13737  3.41516  2.82454  3.32015     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     18   2.97172  3.62305  0.11337  3.53141     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     19   3.47328  0.12552  3.52102  2.85815     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     20   0.13737  3.41516  2.82454  3.32015     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     21   0.13737  3.41516  2.82454  3.32015     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     22   2.97172  3.62305  0.11337  3.53141     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     23   0.46297  2.69963  1.48594  2.56304     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     24   2.73503  0.38530  2.80315  1.63866     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     25   3.12398  2.61761  3.17077  0.17308     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     26   0.13737  3.41516  2.82454  3.32015     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     27   3.47328  0.12552  3.52102  2.85815     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     28   3.47328  0.12552  3.52102  2.85815     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     29   3.47328  0.12552  3.52102  2.85815     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     30   2.97172  3.62305  0.11337  3.53141     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     31   3.47328  0.12552  3.52102  2.85815     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     32   3.12398  2.61761  3.17077  0.17308     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     33   2.97172  3.62305  0.11337  3.53141     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     34   0.13737  3.41516  2.82454  3.32015     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     35   0.13737  3.41516  2.82454  3.32015     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     36   3.47328  0.12552  3.52102  2.85815     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     37   3.12398  2.61761  3.17077  0.17308     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     38   3.12398  2.61761  3.17077  0.17308     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     39   0.13737  3.41516  2.82454  3.32015     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     40   0.13737  3.41516  2.82454  3.32015     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     41   2.97172  3.62305  0.11337  3.53141     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     42   3.47328  0.12552  3.52102  2.85815     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     43   0.13737  3.41516  2.82454  3.32015     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     44   3.12398  2.61761  3.17077  0.17308     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03615  4.03135  4.03135  1.46634  0.26236  1.09861  0.40547
     45   0.13737  3.41516  2.82454  3.32015     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01344        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eightc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:19 2012
NSEQ  2
EFFN  2.000000
CKSUM 1363592007
STATS LOCAL MSV       -7.2798  0.72798
STATS LOCAL VITERBI   -8.2533  0.72798
STATS LOCAL FORWARD   -3.3804  0.72798
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24362  1.24172  1.56866  1.53968
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eightd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:26 2012
NSEQ  2
EFFN  2.000000
CKSUM 1020504900
STATS LOCAL MSV       -7.5516  0.72962
STATS LOCAL VITERBI   -8.2423  0.72962
STATS LOCAL FORWARD   -3.4571  0.72962
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19990  1.38841  1.59960  1.39705
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.92825  2.28391  0.95698  2.13014     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   1.03732  1.95876  1.96551  1.00928     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eighte_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 868517852
STATS LOCAL MSV       -7.3772  0.72815
STATS LOCAL VITERBI   -8.2352  0.72815
STATS LOCAL FORWARD   -3.3266  0.72815
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.14885  1.24042  1.72116  1.53769
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eighteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:59:33 2012
NSEQ  15
EFFN  3.431396
CKSUM 2285872056
STATS LOCAL MSV       -7.7397  0.71932
STATS LOCAL VITERBI   -7.5822  0.71932
STATS LOCAL FORWARD   -4.2073  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26609  1.33300  1.52381  1.44179
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  0.00000        *
      1   2.68612  1.69220  2.74910  0.38015      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      2   1.74335  0.46305  2.47031  2.19692      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      3   3.12325  2.61715  3.17007  0.17319      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      4   3.12325  2.61715  3.17007  0.17319      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      5   2.97122  3.62232  0.11345  3.53061      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      6   0.13746  3.41445  2.82408  3.31937      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      7   3.47246  0.12561  3.52023  2.85755      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      8   3.47246  0.12561  3.52023  2.85755      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
      9   3.12325  2.61715  3.17007  0.17319      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     10   3.47246  0.12561  3.52023  2.85755     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     11   0.13746  3.41445  2.82408  3.31937     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     12   2.97122  3.62232  0.11345  3.53061     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     13   0.13746  3.41445  2.82408  3.31937     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     14   3.12325  2.61715  3.17007  0.17319     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     15   3.47246  0.12561  3.52023  2.85755     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     16   0.13746  3.41445  2.82408  3.31937     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     17   2.97122  3.62232  0.11345  3.53061     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     18   2.97122  3.62232  0.11345  3.53061     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     19   3.47246  0.12561  3.52023  2.85755     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     20   0.13746  3.41445  2.82408  3.31937     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     21   0.13746  3.41445  2.82408  3.31937     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     22   2.97122  3.62232  0.11345  3.53061     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     23   2.97122  3.62232  0.11345  3.53061     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     24   3.47246  0.12561  3.52023  2.85755     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     25   3.12325  2.61715  3.17007  0.17319     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     26   0.13746  3.41445  2.82408  3.31937     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     27   3.47246  0.12561  3.52023  2.85755     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     28   3.47246  0.12561  3.52023  2.85755     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     29   3.47246  0.12561  3.52023  2.85755     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     30   2.97122  3.62232  0.11345  3.53061     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     31   3.47246  0.12561  3.52023  2.85755     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     32   3.12325  2.61715  3.17007  0.17319     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     33   2.97122  3.62232  0.11345  3.53061     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     34   0.13746  3.41445  2.82408  3.31937     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     35   0.13746  3.41445  2.82408  3.31937     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     36   3.12325  2.61715  3.17007  0.17319     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     37   3.12325  2.61715  3.17007  0.17319     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     38   3.12325  2.61715  3.17007  0.17319     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     39   0.13746  3.41445  2.82408  3.31937     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     40   0.13746  3.41445  2.82408  3.31937     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     41   2.97122  3.62232  0.11345  3.53061     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     42   3.47246  0.12561  3.52023  2.85755     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     43   0.13746  3.41445  2.82408  3.31937     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     44   3.12325  2.61715  3.17007  0.17319     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03616  4.03094  4.03094  1.46634  0.26236  1.09861  0.40547
     45   0.13746  3.41445  2.82408  3.31937     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01824  4.01303        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eightf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:41 2012
NSEQ  3
EFFN  3.000000
CKSUM 996407087
STATS LOCAL MSV       -8.1735  0.72048
STATS LOCAL VITERBI   -7.7269  0.72048
STATS LOCAL FORWARD   -3.9301  0.72048
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11576  1.38962  1.68550  1.43626
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eightg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:47 2012
NSEQ  3
EFFN  3.000000
CKSUM 818586296
STATS LOCAL MSV       -8.0297  0.72074
STATS LOCAL VITERBI   -7.7589  0.72074
STATS LOCAL FORWARD   -3.8190  0.72074
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11716  1.25292  1.78063  1.52054
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.43088  1.34923  2.50068  0.56112     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:57:18 2012
NSEQ  2
EFFN  2.000000
CKSUM 1725590445
STATS LOCAL MSV       -7.5776  0.72814
STATS LOCAL VITERBI   -8.3322  0.72814
STATS LOCAL FORWARD   -3.5527  0.72814
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23965  1.39937  1.49627  1.42797
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.53331  3.02441  0.20344  2.88069      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fifteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:43 2012
NSEQ  6
EFFN  3.237305
CKSUM 3693209712
STATS LOCAL MSV       -7.9784  0.71932
STATS LOCAL VITERBI   -7.6145  0.71932
STATS LOCAL FORWARD   -4.1523  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28148  1.14624  1.52996  1.67131
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  0.00000        *
      1   3.40113  0.13409  3.45193  2.80566      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      2   3.06071  2.57738  3.10992  0.18324      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      3   3.40113  0.13409  3.45193  2.80566      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      4   3.40113  0.13409  3.45193  2.80566      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      5   2.92809  3.55954  0.12029  3.46131      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      6   0.14561  3.35254  2.78388  3.25159      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      7   3.40113  0.13409  3.45193  2.80566      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      8   3.40113  0.13409  3.45193  2.80566      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
      9   3.06071  2.57738  3.10992  0.18324      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     10   3.40113  0.13409  3.45193  2.80566     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     11   0.14561  3.35254  2.78388  3.25159     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     12   2.92809  3.55954  0.12029  3.46131     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     13   0.14561  3.35254  2.78388  3.25159     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     14   3.06071  2.57738  3.10992  0.18324     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     15   3.40113  0.13409  3.45193  2.80566     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     16   0.14561  3.35254  2.78388  3.25159     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     17   2.92809  3.55954  0.12029  3.46131     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     18   2.92809  3.55954  0.12029  3.46131     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     19   3.40113  0.13409  3.45193  2.80566     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     20   2.92809  3.55954  0.12029  3.46131     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     21   0.14561  3.35254  2.78388  3.25159     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     22   2.92809  3.55954  0.12029  3.46131     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     23   0.14561  3.35254  2.78388  3.25159     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     24   3.40113  0.13409  3.45193  2.80566     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     25   2.69920  1.80781  2.76119  0.34883     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     26   0.14561  3.35254  2.78388  3.25159     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     27   3.40113  0.13409  3.45193  2.80566     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     28   2.92809  3.55954  0.12029  3.46131     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     29   3.40113  0.13409  3.45193  2.80566     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     30   3.40113  0.13409  3.45193  2.80566     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     31   3.40113  0.13409  3.45193  2.80566     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     32   3.06071  2.57738  3.10992  0.18324     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     33   2.92809  3.55954  0.12029  3.46131     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     34   0.14561  3.35254  2.78388  3.25159     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     35   0.14561  3.35254  2.78388  3.25159     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     36   3.40113  0.13409  3.45193  2.80566     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     37   3.06071  2.57738  3.10992  0.18324     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     38   3.06071  2.57738  3.10992  0.18324     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     39   0.14561  3.35254  2.78388  3.25159     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     40   0.14561  3.35254  2.78388  3.25159     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     41   2.92809  3.55954  0.12029  3.46131     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     42   3.40113  0.13409  3.45193  2.80566     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     43   0.14561  3.35254  2.78388  3.25159     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     44   3.06071  2.57738  3.10992  0.18324     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03748  3.99587  3.99587  1.46634  0.26236  1.09861  0.40547
     45   0.14561  3.35254  2.78388  3.25159     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01891  3.97731        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fifty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:45 2012
NSEQ  2
EFFN  2.000000
CKSUM 3588865177
STATS LOCAL MSV       -7.6416  0.72809
STATS LOCAL VITERBI   -8.1785  0.72809
STATS LOCAL FORWARD   -3.3202  0.72809
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29441  1.23704  1.57164  1.47844
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:41:05 2012
NSEQ  3
EFFN  3.000000
CKSUM 2941133694
STATS LOCAL MSV       -8.1652  0.72067
STATS LOCAL VITERBI   -7.6786  0.72067
STATS LOCAL FORWARD   -3.8005  0.72067
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16779  1.29306  1.59776  1.55037
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.43223  0.62271  2.50508  1.22417     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:37 2012
NSEQ  3
EFFN  3.000000
CKSUM 169487606
STATS LOCAL MSV       -7.9297  0.72040
STATS LOCAL VITERBI   -7.7017  0.72040
STATS LOCAL FORWARD   -4.0414  0.72040
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28208  1.14532  1.52431  1.67853
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.43088  1.34923  2.50068  0.56112     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:28 2012
NSEQ  4
EFFN  3.363281
CKSUM 3978608917
STATS LOCAL MSV       -8.1693  0.71933
STATS LOCAL VITERBI   -7.5580  0.71933
STATS LOCAL FORWARD   -4.1977  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21441  1.30452  1.49557  1.57171
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
      1   3.10166  2.60344  3.14932  0.17659      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      2   2.95651  3.60084  0.11574  3.50687      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      3   3.10166  2.60344  3.14932  0.17659      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      4   3.44798  0.12845  3.49681  2.83981      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      5   2.95651  3.60084  0.11574  3.50687      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      6   0.14020  3.39317  2.81030  3.29606      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      7   3.44798  0.12845  3.49681  2.83981      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      8   3.44798  0.12845  3.49681  2.83981      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      9   3.10166  2.60344  3.14932  0.17659      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     10   3.44798  0.12845  3.49681  2.83981     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     11   0.14020  3.39317  2.81030  3.29606     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     12   2.06759  1.02509  0.97430  1.98565     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     13   0.14020  3.39317  2.81030  3.29606     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     14   3.10166  2.60344  3.14932  0.17659     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     15   3.44798  0.12845  3.49681  2.83981     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     16   0.14020  3.39317  2.81030  3.29606     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     17   2.95651  3.60084  0.11574  3.50687     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     18   2.95651  3.60084  0.11574  3.50687     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     19   3.44798  0.12845  3.49681  2.83981     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     20   2.95651  3.60084  0.11574  3.50687     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     21   0.14020  3.39317  2.81030  3.29606     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     22   2.95651  3.60084  0.11574  3.50687     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     23   0.14020  3.39317  2.81030  3.29606     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     24   3.44798  0.12845  3.49681  2.83981     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     25   0.14020  3.39317  2.81030  3.29606     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     26   0.14020  3.39317  2.81030  3.29606     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     27   3.44798  0.12845  3.49681  2.83981     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     28   3.44798  0.12845  3.49681  2.83981     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     29   3.44798  0.12845  3.49681  2.83981     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     30   2.95651  3.60084  0.11574  3.50687     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     31   3.44798  0.12845  3.49681  2.83981     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     32   3.10166  2.60344  3.14932  0.17659     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     33   2.95651  3.60084  0.11574  3.50687     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     34   0.14020  3.39317  2.81030  3.29606     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     35   0.14020  3.39317  2.81030  3.29606     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     36   3.10166  2.60344  3.14932  0.17659     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     37   3.10166  2.60344  3.14932  0.17659     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     38   3.10166  2.60344  3.14932  0.17659     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     39   0.14020  3.39317  2.81030  3.29606     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     40   0.14020  3.39317  2.81030  3.29606     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     41   2.95651  3.60084  0.11574  3.50687     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     42   3.44798  0.12845  3.49681  2.83981     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     43   0.14020  3.39317  2.81030  3.29606     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     44   3.10166  2.60344  3.14932  0.17659     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     45   0.14020  3.39317  2.81030  3.29606     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:41:16 2012
NSEQ  3
EFFN  3.000000
CKSUM 1744694786
STATS LOCAL MSV       -7.9097  0.72088
STATS LOCAL VITERBI   -7.7741  0.72088
STATS LOCAL FORWARD   -3.9482  0.72088
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21864  1.51265  1.51502  1.33090
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.43088  1.34923  2.50068  0.56112     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:54 2012
NSEQ  2
EFFN  2.000000
CKSUM 7046851
STATS LOCAL MSV       -7.6652  0.72933
STATS LOCAL VITERBI   -8.2495  0.72933
STATS LOCAL FORWARD   -3.3659  0.72933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22961  1.37917  1.44642  1.51234
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   1.88179  1.10717  1.04597  1.79675     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   1.89532  1.96405  1.06955  1.00436     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:55 2012
NSEQ  3
EFFN  3.000000
CKSUM 1156733467
STATS LOCAL MSV       -8.0424  0.72110
STATS LOCAL VITERBI   -7.9132  0.72110
STATS LOCAL FORWARD   -4.1416  0.72110
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.13098  1.31158  1.66327  1.52155
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.53825  2.56454  1.38402  2.42241      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.43258  1.35379  2.50233  0.55855     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:47 2012
NSEQ  2
EFFN  2.000000
CKSUM 788693777
STATS LOCAL MSV       -7.4171  0.72882
STATS LOCAL VITERBI   -8.2608  0.72882
STATS LOCAL FORWARD   -3.5113  0.72882
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21578  1.39607  1.53509  1.42497
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   0.23862  2.84929  2.43386  2.70756      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.92825  2.28391  0.95698  2.13014     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:15 2012
NSEQ  6
EFFN  3.770508
CKSUM 3616590276
STATS LOCAL MSV       -7.2567  0.71932
STATS LOCAL VITERBI   -7.6107  0.71932
STATS LOCAL FORWARD   -4.2424  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22316  1.36172  1.52650  1.46021
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  0.00000        *
      1   2.25146  2.22866  1.37358  0.62758      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      2   2.20737  2.32313  0.66481  1.28132      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      3   2.58882  1.33574  2.65600  0.52476      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      4   3.58586  0.11338  3.62859  2.93895      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      5   3.03835  3.72114  0.10355  3.64005      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      6   0.12549  3.51350  2.88787  3.42806      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      7   3.58586  0.11338  3.62859  2.93895      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      8   3.58586  0.11338  3.62859  2.93895      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
      9   3.22519  2.68179  3.26804  0.15814      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     10   3.58586  0.11338  3.62859  2.93895     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     11   0.12549  3.51350  2.88787  3.42806     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     12   3.03835  3.72114  0.10355  3.64005     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     13   0.12549  3.51350  2.88787  3.42806     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     14   3.22519  2.68179  3.26804  0.15814     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     15   3.58586  0.11338  3.62859  2.93895     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     16   0.12549  3.51350  2.88787  3.42806     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     17   3.03835  3.72114  0.10355  3.64005     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     18   0.12549  3.51350  2.88787  3.42806     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     19   3.58586  0.11338  3.62859  2.93895     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     20   3.03835  3.72114  0.10355  3.64005     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     21   0.50286  2.71339  1.37489  2.57673     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     22   3.03835  3.72114  0.10355  3.64005     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     23   0.12549  3.51350  2.88787  3.42806     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     24   3.22519  2.68179  3.26804  0.15814     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     25   3.22519  2.68179  3.26804  0.15814     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     26   0.12549  3.51350  2.88787  3.42806     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     27   3.58586  0.11338  3.62859  2.93895     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     28   3.58586  0.11338  3.62859  2.93895     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     29   3.58586  0.11338  3.62859  2.93895     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     30   3.03835  3.72114  0.10355  3.64005     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     31   3.58586  0.11338  3.62859  2.93895     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     32   3.22519  2.68179  3.26804  0.15814     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     33   3.03835  3.72114  0.10355  3.64005     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     34   0.12549  3.51350  2.88787  3.42806     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     35   0.12549  3.51350  2.88787  3.42806     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     36   3.22519  2.68179  3.26804  0.15814     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     37   3.22519  2.68179  3.26804  0.15814     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     38   3.22519  2.68179  3.26804  0.15814     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     39   0.12549  3.51350  2.88787  3.42806     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     40   0.12549  3.51350  2.88787  3.42806     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     41   3.03835  3.72114  0.10355  3.64005     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     42   3.58586  0.11338  3.62859  2.93895     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     43   0.12549  3.51350  2.88787  3.42806     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     44   3.22519  2.68179  3.26804  0.15814     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03407  4.08942  4.08942  1.46634  0.26236  1.09861  0.40547
     45   0.12549  3.51350  2.88787  3.42806     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01718  4.07253        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiftytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:40:04 2012
NSEQ  4
EFFN  3.386719
CKSUM 2343365187
STATS LOCAL MSV       -7.6766  0.71933
STATS LOCAL VITERBI   -7.6091  0.71933
STATS LOCAL FORWARD   -3.8781  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15940  1.37200  1.52000  1.54170
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
      1   3.10913  2.60819  3.15650  0.17540      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      2   3.10913  2.60819  3.15650  0.17540      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      3   2.96162  3.60830  0.11494  3.51511      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      4   3.45647  0.12746  3.50493  2.84597      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      5   2.96162  3.60830  0.11494  3.51511      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      6   0.13925  3.40055  2.81508  3.30414      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      7   3.45647  0.12746  3.50493  2.84597      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      8   3.45647  0.12746  3.50493  2.84597      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      9   3.10913  2.60819  3.15650  0.17540      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     10   3.45647  0.12746  3.50493  2.84597     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     11   0.13925  3.40055  2.81508  3.30414     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     12   2.96162  3.60830  0.11494  3.51511     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     13   0.13925  3.40055  2.81508  3.30414     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     14   2.96162  3.60830  0.11494  3.51511     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     15   3.45647  0.12746  3.50493  2.84597     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     16   0.13925  3.40055  2.81508  3.30414     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     17   2.96162  3.60830  0.11494  3.51511     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     18   2.96162  3.60830  0.11494  3.51511     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     19   3.45647  0.12746  3.50493  2.84597     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     20   0.13925  3.40055  2.81508  3.30414     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     21   0.13925  3.40055  2.81508  3.30414     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     22   2.96162  3.60830  0.11494  3.51511     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     23   0.13925  3.40055  2.81508  3.30414     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     24   2.61564  1.57295  2.68080  0.42934     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     25   3.10913  2.60819  3.15650  0.17540     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     26   0.13925  3.40055  2.81508  3.30414     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     27   3.45647  0.12746  3.50493  2.84597     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     28   3.45647  0.12746  3.50493  2.84597     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     29   3.45647  0.12746  3.50493  2.84597     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     30   2.96162  3.60830  0.11494  3.51511     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     31   3.45647  0.12746  3.50493  2.84597     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     32   2.61564  1.57295  2.68080  0.42934     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     33   0.13925  3.40055  2.81508  3.30414     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     34   0.13925  3.40055  2.81508  3.30414     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     35   0.13925  3.40055  2.81508  3.30414     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     36   3.10913  2.60819  3.15650  0.17540     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     37   3.10913  2.60819  3.15650  0.17540     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     38   3.10913  2.60819  3.15650  0.17540     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     39   0.13925  3.40055  2.81508  3.30414     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     40   0.13925  3.40055  2.81508  3.30414     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     41   2.96162  3.60830  0.11494  3.51511     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     42   3.45647  0.12746  3.50493  2.84597     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     43   0.13925  3.40055  2.81508  3.30414     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     44   3.10913  2.60819  3.15650  0.17540     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     45   0.13925  3.40055  2.81508  3.30414     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:55 2012
NSEQ  33
EFFN  3.323364
CKSUM 2448807355
STATS LOCAL MSV       -8.2738  0.71933
STATS LOCAL VITERBI   -7.5799  0.71933
STATS LOCAL FORWARD   -4.1726  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27412  1.31929  1.52432  1.44720
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  0.00000        *
      1   2.16430  2.15934  2.34011  0.39534      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      2   3.43336  0.13018  3.48281  2.82918      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      3   3.08883  2.59528  3.13698  0.17864      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      4   3.08883  2.59528  3.13698  0.17864      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      5   2.94768  3.58798  0.11714  3.49267      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      6   0.14187  3.38048  2.80207  3.28217      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      7   3.43336  0.13018  3.48281  2.82918      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      8   3.43336  0.13018  3.48281  2.82918      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
      9   3.08883  2.59528  3.13698  0.17864      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     10   3.43336  0.13018  3.48281  2.82918     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     11   0.14187  3.38048  2.80207  3.28217     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     12   2.94768  3.58798  0.11714  3.49267     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     13   0.14187  3.38048  2.80207  3.28217     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     14   3.08883  2.59528  3.13698  0.17864     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     15   3.43336  0.13018  3.48281  2.82918     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     16   0.14187  3.38048  2.80207  3.28217     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     17   2.94768  3.58798  0.11714  3.49267     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     18   2.94768  3.58798  0.11714  3.49267     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     19   3.43336  0.13018  3.48281  2.82918     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     20   0.14187  3.38048  2.80207  3.28217     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     21   0.14187  3.38048  2.80207  3.28217     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     22   2.94768  3.58798  0.11714  3.49267     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     23   2.94768  3.58798  0.11714  3.49267     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     24   3.43336  0.13018  3.48281  2.82918     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     25   3.08883  2.59528  3.13698  0.17864     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     26   0.14187  3.38048  2.80207  3.28217     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     27   3.43336  0.13018  3.48281  2.82918     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     28   3.43336  0.13018  3.48281  2.82918     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     29   3.43336  0.13018  3.48281  2.82918     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     30   2.94768  3.58798  0.11714  3.49267     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     31   3.43336  0.13018  3.48281  2.82918     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     32   3.08883  2.59528  3.13698  0.17864     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     33   2.94768  3.58798  0.11714  3.49267     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     34   0.14187  3.38048  2.80207  3.28217     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     35   0.14187  3.38048  2.80207  3.28217     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     36   3.08883  2.59528  3.13698  0.17864     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     37   3.08883  2.59528  3.13698  0.17864     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     38   3.08883  2.59528  3.13698  0.17864     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     39   0.14187  3.38048  2.80207  3.28217     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     40   0.14187  3.38048  2.80207  3.28217     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     41   2.94768  3.58798  0.11714  3.49267     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     42   3.43336  0.13018  3.48281  2.82918     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     43   0.14187  3.38048  2.80207  3.28217     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     44   3.08883  2.59528  3.13698  0.17864     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01157  4.01157  1.46634  0.26236  1.09861  0.40547
     45   0.14187  3.38048  2.80207  3.28217     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99330        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:02 2012
NSEQ  6
EFFN  3.290039
CKSUM 1095388467
STATS LOCAL MSV       -8.1640  0.71933
STATS LOCAL VITERBI   -7.6720  0.71933
STATS LOCAL FORWARD   -4.1206  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22038  1.38745  1.60911  1.36608
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  0.00000        *
      1   3.07802  2.58840  3.12657  0.18039      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      2   3.07802  2.58840  3.12657  0.18039      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      3   3.07802  2.58840  3.12657  0.18039      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      4   3.07802  2.58840  3.12657  0.18039      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      5   2.94018  3.57708  0.11833  3.48065      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      6   0.14329  3.36976  2.79509  3.27043      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      7   3.42100  0.13166  3.47097  2.82017      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      8   3.42100  0.13166  3.47097  2.82017      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
      9   3.07802  2.58840  3.12657  0.18039      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     10   3.42100  0.13166  3.47097  2.82017     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     11   0.14329  3.36976  2.79509  3.27043     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     12   2.94018  3.57708  0.11833  3.48065     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     13   0.14329  3.36976  2.79509  3.27043     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     14   3.07802  2.58840  3.12657  0.18039     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     15   3.42100  0.13166  3.47097  2.82017     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     16   0.14329  3.36976  2.79509  3.27043     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     17   2.94018  3.57708  0.11833  3.48065     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     18   2.94018  3.57708  0.11833  3.48065     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     19   3.42100  0.13166  3.47097  2.82017     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     20   0.14329  3.36976  2.79509  3.27043     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     21   0.14329  3.36976  2.79509  3.27043     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     22   2.94018  3.57708  0.11833  3.48065     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     23   0.14329  3.36976  2.79509  3.27043     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     24   3.42100  0.13166  3.47097  2.82017     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     25   3.07802  2.58840  3.12657  0.18039     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     26   0.14329  3.36976  2.79509  3.27043     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     27   3.42100  0.13166  3.47097  2.82017     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     28   3.42100  0.13166  3.47097  2.82017     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     29   3.42100  0.13166  3.47097  2.82017     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     30   2.94018  3.57708  0.11833  3.48065     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     31   3.42100  0.13166  3.47097  2.82017     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     32   3.07802  2.58840  3.12657  0.18039     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     33   2.94018  3.57708  0.11833  3.48065     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     34   0.14329  3.36976  2.79509  3.27043     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     35   0.14329  3.36976  2.79509  3.27043     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     36   3.07802  2.58840  3.12657  0.18039     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     37   3.07802  2.58840  3.12657  0.18039     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     38   3.07802  2.58840  3.12657  0.18039     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     39   0.14329  3.36976  2.79509  3.27043     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     40   0.14329  3.36976  2.79509  3.27043     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     41   2.94018  3.57708  0.11833  3.48065     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     42   3.42100  0.13166  3.47097  2.82017     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     43   0.14329  3.36976  2.79509  3.27043     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     44   3.07802  2.58840  3.12657  0.18039     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03711  4.00552  4.00552  1.46634  0.26236  1.09861  0.40547
     45   0.14329  3.36976  2.79509  3.27043     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01873  3.98714        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:10 2012
NSEQ  3
EFFN  3.000000
CKSUM 414395773
STATS LOCAL MSV       -8.1682  0.72059
STATS LOCAL VITERBI   -7.7080  0.72059
STATS LOCAL FORWARD   -4.1086  0.72059
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39094  1.26436  1.40758  1.49610
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   1.34853  2.58976  0.54705  2.44542     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fived_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:18 2012
NSEQ  4
EFFN  3.589844
CKSUM 1898865493
STATS LOCAL MSV       -7.7769  0.71931
STATS LOCAL VITERBI   -7.5481  0.71931
STATS LOCAL FORWARD   -4.2512  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28279  1.32952  1.52116  1.42847
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  0.00000        *
      1   2.65559  1.56074  2.72005  0.42482      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      2   1.56999  0.53851  2.39137  2.14706      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      3   3.17200  2.64808  3.21693  0.16580      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      4   3.17200  2.64808  3.21693  0.16580      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      5   3.00379  3.67013  0.10853  3.58350      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      6   0.13155  3.46211  2.85483  3.37163      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      7   3.52715  0.11953  3.57252  2.89697      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      8   3.52715  0.11953  3.57252  2.89697      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
      9   3.17200  2.64808  3.21693  0.16580      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     10   3.52715  0.11953  3.57252  2.89697     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     11   0.13155  3.46211  2.85483  3.37163     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     12   3.00379  3.67013  0.10853  3.58350     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     13   0.13155  3.46211  2.85483  3.37163     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     14   3.17200  2.64808  3.21693  0.16580     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     15   3.52715  0.11953  3.57252  2.89697     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     16   0.13155  3.46211  2.85483  3.37163     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     17   3.00379  3.67013  0.10853  3.58350     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     18   3.00379  3.67013  0.10853  3.58350     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     19   3.52715  0.11953  3.57252  2.89697     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     20   0.13155  3.46211  2.85483  3.37163     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     21   0.13155  3.46211  2.85483  3.37163     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     22   3.00379  3.67013  0.10853  3.58350     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     23   3.00379  3.67013  0.10853  3.58350     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     24   3.52715  0.11953  3.57252  2.89697     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     25   3.17200  2.64808  3.21693  0.16580     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     26   0.13155  3.46211  2.85483  3.37163     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     27   3.52715  0.11953  3.57252  2.89697     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     28   3.52715  0.11953  3.57252  2.89697     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     29   3.52715  0.11953  3.57252  2.89697     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     30   3.00379  3.67013  0.10853  3.58350     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     31   3.52715  0.11953  3.57252  2.89697     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     32   3.17200  2.64808  3.21693  0.16580     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     33   3.00379  3.67013  0.10853  3.58350     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     34   0.51549  2.41965  2.31139  1.53844     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     35   0.13155  3.46211  2.85483  3.37163     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     36   3.17200  2.64808  3.21693  0.16580     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     37   3.17200  2.64808  3.21693  0.16580     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     38   3.17200  2.64808  3.21693  0.16580     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     39   0.13155  3.46211  2.85483  3.37163     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     40   0.13155  3.46211  2.85483  3.37163     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     41   3.00379  3.67013  0.10853  3.58350     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     42   3.52715  0.11953  3.57252  2.89697     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     43   0.13155  3.46211  2.85483  3.37163     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     44   3.17200  2.64808  3.21693  0.16580     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05869  4.05869  1.46634  0.26236  1.09861  0.40547
     45   0.13155  3.46211  2.85483  3.37163     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01773  4.04127        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:24 2012
NSEQ  18
EFFN  3.440918
CKSUM 2904005102
STATS LOCAL MSV       -7.8258  0.71932
STATS LOCAL VITERBI   -7.5534  0.71932
STATS LOCAL FORWARD   -4.0810  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15979  1.37418  1.69811  1.38480
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  0.00000        *
      1   2.65643  1.62968  2.72042  0.40352      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      2   3.22289  0.18400  3.27858  2.40191      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      3   3.12623  2.61905  3.17294  0.17273      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      4   3.12623  2.61905  3.17294  0.17273      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      5   0.13709  3.41738  2.82598  3.32258      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      6   0.13709  3.41738  2.82598  3.32258      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      7   3.47583  0.12523  3.52346  2.85999      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      8   3.47583  0.12523  3.52346  2.85999      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
      9   3.12623  2.61905  3.17294  0.17273      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     10   3.47583  0.12523  3.52346  2.85999     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     11   0.13709  3.41738  2.82598  3.32258     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     12   2.97325  3.62528  0.11314  3.53388     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     13   0.13709  3.41738  2.82598  3.32258     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     14   3.12623  2.61905  3.17294  0.17273     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     15   3.47583  0.12523  3.52346  2.85999     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     16   0.13709  3.41738  2.82598  3.32258     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     17   2.97325  3.62528  0.11314  3.53388     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     18   2.97325  3.62528  0.11314  3.53388     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     19   3.47583  0.12523  3.52346  2.85999     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     20   0.13709  3.41738  2.82598  3.32258     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     21   0.13709  3.41738  2.82598  3.32258     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     22   2.97325  3.62528  0.11314  3.53388     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     23   0.13709  3.41738  2.82598  3.32258     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     24   2.85715  2.02037  2.91409  0.28010     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     25   3.12623  2.61905  3.17294  0.17273     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     26   0.13709  3.41738  2.82598  3.32258     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     27   3.47583  0.12523  3.52346  2.85999     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     28   3.47583  0.12523  3.52346  2.85999     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     29   3.47583  0.12523  3.52346  2.85999     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     30   2.97325  3.62528  0.11314  3.53388     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     31   3.47583  0.12523  3.52346  2.85999     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     32   3.12623  2.61905  3.17294  0.17273     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     33   2.97325  3.62528  0.11314  3.53388     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     34   0.13709  3.41738  2.82598  3.32258     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     35   0.13709  3.41738  2.82598  3.32258     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     36   3.12623  2.61905  3.17294  0.17273     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     37   3.12623  2.61905  3.17294  0.17273     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     38   3.12623  2.61905  3.17294  0.17273     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     39   0.13709  3.41738  2.82598  3.32258     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     40   0.13709  3.41738  2.82598  3.32258     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     41   2.97325  3.62528  0.11314  3.53388     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     42   3.47583  0.12523  3.52346  2.85999     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     43   0.13709  3.41738  2.82598  3.32258     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     44   3.12623  2.61905  3.17294  0.17273     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03610  4.03263  4.03263  1.46634  0.26236  1.09861  0.40547
     45   0.13709  3.41738  2.82598  3.32258     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01821  4.01475        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:31 2012
NSEQ  4
EFFN  3.238281
CKSUM 218697528
STATS LOCAL MSV       -8.1769  0.71931
STATS LOCAL VITERBI   -7.6530  0.71931
STATS LOCAL FORWARD   -4.0168  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11219  1.32828  1.60560  1.58251
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  0.00000        *
      1   3.40150  0.13404  3.45229  2.80593      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      2   0.14557  3.35286  2.78409  3.25194      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      3   0.14557  3.35286  2.78409  3.25194      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      4   3.06103  2.57758  3.11024  0.18319      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      5   2.92831  3.55987  0.12026  3.46167      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      6   0.14557  3.35286  2.78409  3.25194      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      7   3.40150  0.13404  3.45229  2.80593      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      8   3.40150  0.13404  3.45229  2.80593      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
      9   3.06103  2.57758  3.11024  0.18319      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     10   3.40150  0.13404  3.45229  2.80593     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     11   0.14557  3.35286  2.78409  3.25194     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     12   2.92831  3.55987  0.12026  3.46167     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     13   0.14557  3.35286  2.78409  3.25194     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     14   3.06103  2.57758  3.11024  0.18319     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     15   3.40150  0.13404  3.45229  2.80593     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     16   0.14557  3.35286  2.78409  3.25194     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     17   2.92831  3.55987  0.12026  3.46167     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     18   2.92831  3.55987  0.12026  3.46167     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     19   3.40150  0.13404  3.45229  2.80593     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     20   0.14557  3.35286  2.78409  3.25194     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     21   0.14557  3.35286  2.78409  3.25194     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     22   2.92831  3.55987  0.12026  3.46167     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     23   0.14557  3.35286  2.78409  3.25194     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     24   3.40150  0.13404  3.45229  2.80593     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     25   3.06103  2.57758  3.11024  0.18319     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     26   0.14557  3.35286  2.78409  3.25194     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     27   3.40150  0.13404  3.45229  2.80593     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     28   3.40150  0.13404  3.45229  2.80593     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     29   3.40150  0.13404  3.45229  2.80593     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     30   2.92831  3.55987  0.12026  3.46167     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     31   3.40150  0.13404  3.45229  2.80593     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     32   3.06103  2.57758  3.11024  0.18319     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     33   2.92831  3.55987  0.12026  3.46167     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     34   0.14557  3.35286  2.78409  3.25194     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     35   0.14557  3.35286  2.78409  3.25194     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     36   3.06103  2.57758  3.11024  0.18319     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     37   3.06103  2.57758  3.11024  0.18319     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     38   3.06103  2.57758  3.11024  0.18319     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     39   0.14557  3.35286  2.78409  3.25194     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     40   0.14557  3.35286  2.78409  3.25194     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     41   2.92831  3.55987  0.12026  3.46167     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     42   3.40150  0.13404  3.45229  2.80593     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     43   0.14557  3.35286  2.78409  3.25194     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     44   3.06103  2.57758  3.11024  0.18319     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03747  3.99605  3.99605  1.46634  0.26236  1.09861  0.40547
     45   0.14557  3.35286  2.78409  3.25194     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01891  3.97749        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:38 2012
NSEQ  3
EFFN  3.000000
CKSUM 117876825
STATS LOCAL MSV       -8.1355  0.72022
STATS LOCAL VITERBI   -7.5293  0.72022
STATS LOCAL FORWARD   -4.1705  0.72022
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22000  1.46772  1.37224  1.51058
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:44 2012
NSEQ  3
EFFN  3.000000
CKSUM 3959841855
STATS LOCAL MSV       -7.8534  0.72044
STATS LOCAL VITERBI   -7.7389  0.72044
STATS LOCAL FORWARD   -4.0256  0.72044
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16687  1.25924  1.51839  1.68347
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.43088  1.34923  2.50068  0.56112      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   0.15719  3.27118  2.73043  3.16274      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivei_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:50 2012
NSEQ  4
EFFN  3.292969
CKSUM 2067499997
STATS LOCAL MSV       -8.3581  0.71933
STATS LOCAL VITERBI   -7.5385  0.71933
STATS LOCAL FORWARD   -4.2980  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39697  1.26146  1.40117  1.50011
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  0.00000        *
      1   3.07897  2.58901  3.12749  0.18024      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      2   3.42209  0.13153  3.47201  2.82097      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      3   3.07897  2.58901  3.12749  0.18024      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      4   1.65496  2.81433  0.38529  2.67796      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      5   2.94085  3.57805  0.11823  3.48171      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      6   0.14316  3.37070  2.79571  3.27146      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      7   3.42209  0.13153  3.47201  2.82097      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      8   3.42209  0.13153  3.47201  2.82097      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
      9   3.07897  2.58901  3.12749  0.18024      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     10   3.42209  0.13153  3.47201  2.82097     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     11   2.94085  3.57805  0.11823  3.48171     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     12   2.94085  3.57805  0.11823  3.48171     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     13   0.14316  3.37070  2.79571  3.27146     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     14   3.07897  2.58901  3.12749  0.18024     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     15   3.42209  0.13153  3.47201  2.82097     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     16   0.14316  3.37070  2.79571  3.27146     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     17   2.94085  3.57805  0.11823  3.48171     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     18   2.94085  3.57805  0.11823  3.48171     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     19   3.42209  0.13153  3.47201  2.82097     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     20   3.42209  0.13153  3.47201  2.82097     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     21   0.14316  3.37070  2.79571  3.27146     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     22   2.94085  3.57805  0.11823  3.48171     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     23   2.94085  3.57805  0.11823  3.48171     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     24   3.42209  0.13153  3.47201  2.82097     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     25   3.07897  2.58901  3.12749  0.18024     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     26   0.14316  3.37070  2.79571  3.27146     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     27   3.42209  0.13153  3.47201  2.82097     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     28   3.42209  0.13153  3.47201  2.82097     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     29   3.42209  0.13153  3.47201  2.82097     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     30   2.94085  3.57805  0.11823  3.48171     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     31   3.42209  0.13153  3.47201  2.82097     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     32   3.07897  2.58901  3.12749  0.18024     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     33   2.94085  3.57805  0.11823  3.48171     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     34   0.14316  3.37070  2.79571  3.27146     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     35   0.14316  3.37070  2.79571  3.27146     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     36   3.07897  2.58901  3.12749  0.18024     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     37   3.07897  2.58901  3.12749  0.18024     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     38   3.07897  2.58901  3.12749  0.18024     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     39   0.14316  3.37070  2.79571  3.27146     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     40   0.14316  3.37070  2.79571  3.27146     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     41   2.94085  3.57805  0.11823  3.48171     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     42   3.42209  0.13153  3.47201  2.82097     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     43   0.14316  3.37070  2.79571  3.27146     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     44   3.07897  2.58901  3.12749  0.18024     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03709  4.00605  4.00605  1.46634  0.26236  1.09861  0.40547
     45   0.14316  3.37070  2.79571  3.27146     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01872  3.98768        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivej_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:52:57 2012
NSEQ  14
EFFN  3.216309
CKSUM 1938204490
STATS LOCAL MSV       -8.1797  0.71931
STATS LOCAL VITERBI   -7.6430  0.71931
STATS LOCAL FORWARD   -3.9981  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.41013  1.20320  1.45583  1.50305
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  0.00000        *
      1   3.39312  0.13508  3.44425  2.79979      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      2   3.39312  0.13508  3.44425  2.79979      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      3   3.05375  2.57294  3.10323  0.18440      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      4   2.92319  3.55246  0.12110  3.45350      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      5   2.92319  3.55246  0.12110  3.45350      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      6   0.14656  3.34560  2.77935  3.24400      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      7   3.39312  0.13508  3.44425  2.79979      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      8   3.39312  0.13508  3.44425  2.79979      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
      9   3.05375  2.57294  3.10323  0.18440      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     10   3.39312  0.13508  3.44425  2.79979     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     11   0.14656  3.34560  2.77935  3.24400     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     12   2.92319  3.55246  0.12110  3.45350     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     13   3.39312  0.13508  3.44425  2.79979     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     14   3.05375  2.57294  3.10323  0.18440     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     15   3.39312  0.13508  3.44425  2.79979     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     16   0.14656  3.34560  2.77935  3.24400     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     17   2.92319  3.55246  0.12110  3.45350     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     18   2.92319  3.55246  0.12110  3.45350     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     19   3.39312  0.13508  3.44425  2.79979     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     20   2.92319  3.55246  0.12110  3.45350     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     21   3.05375  2.57294  3.10323  0.18440     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     22   2.92319  3.55246  0.12110  3.45350     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     23   0.14656  3.34560  2.77935  3.24400     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     24   3.39312  0.13508  3.44425  2.79979     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     25   3.05375  2.57294  3.10323  0.18440     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     26   0.14656  3.34560  2.77935  3.24400     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     27   3.39312  0.13508  3.44425  2.79979     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     28   3.39312  0.13508  3.44425  2.79979     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     29   3.39312  0.13508  3.44425  2.79979     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     30   2.92319  3.55246  0.12110  3.45350     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     31   3.39312  0.13508  3.44425  2.79979     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     32   3.05375  2.57294  3.10323  0.18440     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     33   2.92319  3.55246  0.12110  3.45350     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     34   0.14656  3.34560  2.77935  3.24400     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     35   0.14656  3.34560  2.77935  3.24400     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     36   3.05375  2.57294  3.10323  0.18440     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     37   3.05375  2.57294  3.10323  0.18440     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     38   3.05375  2.57294  3.10323  0.18440     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     39   0.14656  3.34560  2.77935  3.24400     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     40   0.14656  3.34560  2.77935  3.24400     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     41   2.92319  3.55246  0.12110  3.45350     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     42   3.39312  0.13508  3.44425  2.79979     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     43   0.14656  3.34560  2.77935  3.24400     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     44   3.05375  2.57294  3.10323  0.18440     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03762  3.99200  3.99200  1.46634  0.26236  1.09861  0.40547
     45   0.14656  3.34560  2.77935  3.24400     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97336        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivek_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 538974717
STATS LOCAL MSV       -7.4755  0.72790
STATS LOCAL VITERBI   -8.1493  0.72790
STATS LOCAL FORWARD   -3.5738  0.72790
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24234  1.29073  1.49936  1.54671
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivel_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:11 2012
NSEQ  4
EFFN  3.246094
CKSUM 3448565070
STATS LOCAL MSV       -8.1840  0.71933
STATS LOCAL VITERBI   -7.6695  0.71933
STATS LOCAL FORWARD   -4.1138  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27844  1.38903  1.45039  1.43662
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  0.00000        *
      1   3.40447  0.13368  3.45513  2.80810      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      2   3.06361  2.57923  3.11272  0.18276      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      3   3.06361  2.57923  3.11272  0.18276      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      4   3.40447  0.13368  3.45513  2.80810      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      5   2.93012  3.56249  0.11996  3.46456      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      6   0.14522  3.35543  2.78576  3.25475      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      7   3.40447  0.13368  3.45513  2.80810      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      8   3.40447  0.13368  3.45513  2.80810      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
      9   3.06361  2.57923  3.11272  0.18276      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     10   2.93012  3.56249  0.11996  3.46456     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     11   0.14522  3.35543  2.78576  3.25475     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     12   2.93012  3.56249  0.11996  3.46456     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     13   0.14522  3.35543  2.78576  3.25475     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     14   3.06361  2.57923  3.11272  0.18276     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     15   3.40447  0.13368  3.45513  2.80810     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     16   2.93012  3.56249  0.11996  3.46456     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     17   2.93012  3.56249  0.11996  3.46456     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     18   0.14522  3.35543  2.78576  3.25475     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     19   3.40447  0.13368  3.45513  2.80810     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     20   2.93012  3.56249  0.11996  3.46456     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     21   0.14522  3.35543  2.78576  3.25475     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     22   2.93012  3.56249  0.11996  3.46456     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     23   0.14522  3.35543  2.78576  3.25475     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     24   3.06361  2.57923  3.11272  0.18276     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     25   3.06361  2.57923  3.11272  0.18276     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     26   0.14522  3.35543  2.78576  3.25475     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     27   3.40447  0.13368  3.45513  2.80810     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     28   3.40447  0.13368  3.45513  2.80810     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     29   3.40447  0.13368  3.45513  2.80810     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     30   2.93012  3.56249  0.11996  3.46456     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     31   3.40447  0.13368  3.45513  2.80810     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     32   3.06361  2.57923  3.11272  0.18276     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     33   2.93012  3.56249  0.11996  3.46456     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     34   0.14522  3.35543  2.78576  3.25475     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     35   0.14522  3.35543  2.78576  3.25475     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     36   3.06361  2.57923  3.11272  0.18276     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     37   3.06361  2.57923  3.11272  0.18276     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     38   3.06361  2.57923  3.11272  0.18276     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     39   0.14522  3.35543  2.78576  3.25475     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     40   0.14522  3.35543  2.78576  3.25475     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     41   2.93012  3.56249  0.11996  3.46456     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     42   3.40447  0.13368  3.45513  2.80810     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     43   0.14522  3.35543  2.78576  3.25475     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     44   3.06361  2.57923  3.11272  0.18276     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99748  3.99748  1.46634  0.26236  1.09861  0.40547
     45   0.14522  3.35543  2.78576  3.25475     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97895        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivem_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:17 2012
NSEQ  4
EFFN  3.222656
CKSUM 1184312453
STATS LOCAL MSV       -8.1699  0.71932
STATS LOCAL VITERBI   -7.7304  0.71932
STATS LOCAL FORWARD   -4.0256  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22397  1.20490  1.61149  1.57685
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
      1   3.39555  0.13478  3.44658  2.80157      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      2   3.05586  2.57429  3.10526  0.18405      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      3   3.39555  0.13478  3.44658  2.80157      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      4   3.39555  0.13478  3.44658  2.80157      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      5   2.92468  3.55461  0.12085  3.45586      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      6   0.14627  3.34770  2.78072  3.24630      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      7   3.39555  0.13478  3.44658  2.80157      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      8   3.39555  0.13478  3.44658  2.80157      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      9   3.05586  2.57429  3.10526  0.18405      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     10   3.39555  0.13478  3.44658  2.80157     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     11   0.14627  3.34770  2.78072  3.24630     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     12   2.92468  3.55461  0.12085  3.45586     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     13   0.14627  3.34770  2.78072  3.24630     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     14   3.05586  2.57429  3.10526  0.18405     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     15   3.39555  0.13478  3.44658  2.80157     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     16   0.14627  3.34770  2.78072  3.24630     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     17   2.92468  3.55461  0.12085  3.45586     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     18   0.14627  3.34770  2.78072  3.24630     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     19   3.39555  0.13478  3.44658  2.80157     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     20   2.92468  3.55461  0.12085  3.45586     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     21   0.14627  3.34770  2.78072  3.24630     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     22   2.92468  3.55461  0.12085  3.45586     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     23   0.14627  3.34770  2.78072  3.24630     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     24   3.39555  0.13478  3.44658  2.80157     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     25   3.05586  2.57429  3.10526  0.18405     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     26   0.14627  3.34770  2.78072  3.24630     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     27   3.39555  0.13478  3.44658  2.80157     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     28   3.39555  0.13478  3.44658  2.80157     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     29   3.39555  0.13478  3.44658  2.80157     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     30   2.92468  3.55461  0.12085  3.45586     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     31   3.39555  0.13478  3.44658  2.80157     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     32   3.05586  2.57429  3.10526  0.18405     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     33   2.92468  3.55461  0.12085  3.45586     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     34   0.14627  3.34770  2.78072  3.24630     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     35   0.14627  3.34770  2.78072  3.24630     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     36   3.05586  2.57429  3.10526  0.18405     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     37   3.05586  2.57429  3.10526  0.18405     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     38   3.05586  2.57429  3.10526  0.18405     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     39   0.14627  3.34770  2.78072  3.24630     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     40   0.14627  3.34770  2.78072  3.24630     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     41   2.92468  3.55461  0.12085  3.45586     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     42   3.39555  0.13478  3.44658  2.80157     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     43   0.14627  3.34770  2.78072  3.24630     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     44   3.05586  2.57429  3.10526  0.18405     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     45   0.14627  3.34770  2.78072  3.24630     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:23 2012
NSEQ  4
EFFN  3.332031
CKSUM 2141380269
STATS LOCAL MSV       -8.2750  0.71931
STATS LOCAL VITERBI   -7.7801  0.71931
STATS LOCAL FORWARD   -4.2110  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24934  1.32564  1.42131  1.57854
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
      1   0.14150  3.38325  2.80387  3.28520      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      2   3.09163  2.59706  3.13967  0.17819      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      3   3.43655  0.12980  3.48587  2.83150      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      4   3.43655  0.12980  3.48587  2.83150      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      5   2.94961  3.59079  0.11683  3.49577      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      6   0.14150  3.38325  2.80387  3.28520      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      7   3.43655  0.12980  3.48587  2.83150      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      8   3.43655  0.12980  3.48587  2.83150      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      9   3.09163  2.59706  3.13967  0.17819      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     10   3.43655  0.12980  3.48587  2.83150     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     11   2.94961  3.59079  0.11683  3.49577     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     12   2.94961  3.59079  0.11683  3.49577     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     13   0.14150  3.38325  2.80387  3.28520     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     14   3.09163  2.59706  3.13967  0.17819     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     15   3.43655  0.12980  3.48587  2.83150     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     16   0.14150  3.38325  2.80387  3.28520     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     17   2.94961  3.59079  0.11683  3.49577     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     18   0.14150  3.38325  2.80387  3.28520     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     19   3.43655  0.12980  3.48587  2.83150     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     20   2.94961  3.59079  0.11683  3.49577     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     21   2.94961  3.59079  0.11683  3.49577     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     22   2.94961  3.59079  0.11683  3.49577     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     23   0.86115  2.51680  0.90816  2.37150     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     24   0.14150  3.38325  2.80387  3.28520     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     25   3.09163  2.59706  3.13967  0.17819     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     26   0.14150  3.38325  2.80387  3.28520     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     27   3.43655  0.12980  3.48587  2.83150     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     28   3.43655  0.12980  3.48587  2.83150     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     29   3.43655  0.12980  3.48587  2.83150     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     30   2.94961  3.59079  0.11683  3.49577     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     31   3.43655  0.12980  3.48587  2.83150     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     32   3.09163  2.59706  3.13967  0.17819     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     33   2.94961  3.59079  0.11683  3.49577     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     34   0.14150  3.38325  2.80387  3.28520     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     35   0.14150  3.38325  2.80387  3.28520     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     36   3.09163  2.59706  3.13967  0.17819     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     37   3.09163  2.59706  3.13967  0.17819     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     38   3.09163  2.59706  3.13967  0.17819     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     39   0.14150  3.38325  2.80387  3.28520     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     40   0.14150  3.38325  2.80387  3.28520     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     41   2.94961  3.59079  0.11683  3.49577     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     42   3.43655  0.12980  3.48587  2.83150     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     43   0.14150  3.38325  2.80387  3.28520     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     44   3.09163  2.59706  3.13967  0.17819     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     45   0.14150  3.38325  2.80387  3.28520     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:15:18 2012
NSEQ  8
EFFN  3.582031
CKSUM 195965753
STATS LOCAL MSV       -7.5858  0.71932
STATS LOCAL VITERBI   -7.6704  0.71932
STATS LOCAL FORWARD   -4.2797  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26432  1.21145  1.50325  1.62255
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  0.00000        *
      1   0.69498  1.31322  2.20579  2.10538      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      2   3.16964  2.64659  3.21467  0.16615      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      3   3.52452  0.11982  3.57001  2.89508      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      4   3.52452  0.11982  3.57001  2.89508      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      5   3.00224  3.66784  0.10876  3.58097      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      6   0.13183  3.45981  2.85336  3.36912      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      7   3.52452  0.11982  3.57001  2.89508      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      8   3.52452  0.11982  3.57001  2.89508      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
      9   3.16964  2.64659  3.21467  0.16615      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     10   3.52452  0.11982  3.57001  2.89508     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     11   3.00224  3.66784  0.10876  3.58097     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     12   3.00224  3.66784  0.10876  3.58097     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     13   0.13183  3.45981  2.85336  3.36912     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     14   3.16964  2.64659  3.21467  0.16615     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     15   3.52452  0.11982  3.57001  2.89508     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     16   0.13183  3.45981  2.85336  3.36912     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     17   3.00224  3.66784  0.10876  3.58097     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     18   0.13183  3.45981  2.85336  3.36912     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     19   3.52452  0.11982  3.57001  2.89508     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     20   3.00224  3.66784  0.10876  3.58097     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     21   0.57857  2.62890  1.25834  2.48868     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     22   3.00224  3.66784  0.10876  3.58097     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     23   0.13183  3.45981  2.85336  3.36912     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     24   3.52452  0.11982  3.57001  2.89508     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     25   3.16964  2.64659  3.21467  0.16615     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     26   0.13183  3.45981  2.85336  3.36912     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     27   3.52452  0.11982  3.57001  2.89508     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     28   3.52452  0.11982  3.57001  2.89508     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     29   3.52452  0.11982  3.57001  2.89508     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     30   3.00224  3.66784  0.10876  3.58097     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     31   3.52452  0.11982  3.57001  2.89508     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     32   3.16964  2.64659  3.21467  0.16615     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     33   3.00224  3.66784  0.10876  3.58097     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     34   0.13183  3.45981  2.85336  3.36912     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     35   0.13183  3.45981  2.85336  3.36912     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     36   2.49878  0.67370  2.57055  1.10411     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     37   3.16964  2.64659  3.21467  0.16615     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     38   3.16964  2.64659  3.21467  0.16615     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     39   0.13183  3.45981  2.85336  3.36912     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     40   0.13183  3.45981  2.85336  3.36912     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     41   3.00224  3.66784  0.10876  3.58097     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     42   3.52452  0.11982  3.57001  2.89508     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     43   0.13183  3.45981  2.85336  3.36912     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     44   3.16964  2.64659  3.21467  0.16615     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03520  4.05734  4.05734  1.46634  0.26236  1.09861  0.40547
     45   0.13183  3.45981  2.85336  3.36912     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01776  4.03989        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivep_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:36 2012
NSEQ  17
EFFN  3.365967
CKSUM 4287925610
STATS LOCAL MSV       -8.2565  0.71932
STATS LOCAL VITERBI   -7.6487  0.71932
STATS LOCAL FORWARD   -4.1993  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26446  1.28628  1.52443  1.49806
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  0.00000        *
      1   1.43388  0.63032  2.28387  2.06115      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      2   3.10252  2.60398  3.15014  0.17645      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      3   3.44896  0.12833  3.49774  2.84052      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      4   3.44896  0.12833  3.49774  2.84052      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      5   2.95710  3.60170  0.11565  3.50782      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      6   0.14009  3.39402  2.81085  3.29699      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      7   3.44896  0.12833  3.49774  2.84052      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      8   3.44896  0.12833  3.49774  2.84052      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
      9   3.10252  2.60398  3.15014  0.17645      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     10   3.44896  0.12833  3.49774  2.84052     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     11   0.14009  3.39402  2.81085  3.29699     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     12   2.95710  3.60170  0.11565  3.50782     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     13   0.14009  3.39402  2.81085  3.29699     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     14   3.10252  2.60398  3.15014  0.17645     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     15   3.44896  0.12833  3.49774  2.84052     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     16   2.95710  3.60170  0.11565  3.50782     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     17   2.95710  3.60170  0.11565  3.50782     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     18   0.14009  3.39402  2.81085  3.29699     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     19   3.44896  0.12833  3.49774  2.84052     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     20   2.95710  3.60170  0.11565  3.50782     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     21   0.14009  3.39402  2.81085  3.29699     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     22   2.95710  3.60170  0.11565  3.50782     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     23   0.14009  3.39402  2.81085  3.29699     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     24   3.10252  2.60398  3.15014  0.17645     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     25   3.10252  2.60398  3.15014  0.17645     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     26   0.14009  3.39402  2.81085  3.29699     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     27   3.44896  0.12833  3.49774  2.84052     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     28   3.44896  0.12833  3.49774  2.84052     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     29   3.44896  0.12833  3.49774  2.84052     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     30   2.95710  3.60170  0.11565  3.50782     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     31   3.44896  0.12833  3.49774  2.84052     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     32   3.10252  2.60398  3.15014  0.17645     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     33   2.95710  3.60170  0.11565  3.50782     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     34   0.14009  3.39402  2.81085  3.29699     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     35   0.14009  3.39402  2.81085  3.29699     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     36   3.10252  2.60398  3.15014  0.17645     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     37   3.10252  2.60398  3.15014  0.17645     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     38   3.10252  2.60398  3.15014  0.17645     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     39   0.14009  3.39402  2.81085  3.29699     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     40   0.14009  3.39402  2.81085  3.29699     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     41   2.95710  3.60170  0.11565  3.50782     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     42   3.44896  0.12833  3.49774  2.84052     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     43   0.14009  3.39402  2.81085  3.29699     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     44   3.10252  2.60398  3.15014  0.17645     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03659  4.01926  4.01926  1.46634  0.26236  1.09861  0.40547
     45   0.14009  3.39402  2.81085  3.29699     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01846  4.00113        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveq_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:43 2012
NSEQ  4
EFFN  3.808594
CKSUM 1514537771
STATS LOCAL MSV       -7.0892  0.71932
STATS LOCAL VITERBI   -7.6193  0.71932
STATS LOCAL FORWARD   -3.9103  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.37675  1.44057  1.24790  1.49744
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  0.00000        *
      1   3.23608  2.68870  3.27851  0.15662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      2   2.12257  0.97963  0.98185  2.03861      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      3   3.23608  2.68870  3.27851  0.15662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      4   3.04531  3.73144  0.10258  3.65148      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      5   3.04531  3.73144  0.10258  3.65148      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      6   3.04531  3.73144  0.10258  3.65148      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      7   3.59776  0.11218  3.63995  2.94742      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      8   3.59776  0.11218  3.63995  2.94742      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
      9   3.23608  2.68870  3.27851  0.15662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     10   3.59776  0.11218  3.63995  2.94742     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     11   0.12430  3.52395  2.89458  3.43954     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     12   3.04531  3.73144  0.10258  3.65148     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     13   3.04531  3.73144  0.10258  3.65148     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     14   3.23608  2.68870  3.27851  0.15662     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     15   3.59776  0.11218  3.63995  2.94742     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     16   0.12430  3.52395  2.89458  3.43954     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     17   3.04531  3.73144  0.10258  3.65148     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     18   0.37490  2.86983  1.65322  2.74111     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     19   2.70582  1.56363  2.76927  0.41385     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     20   3.04531  3.73144  0.10258  3.65148     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     21   0.12430  3.52395  2.89458  3.43954     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     22   3.04531  3.73144  0.10258  3.65148     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     23   0.81347  2.59501  0.92651  2.45219     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     24   3.59776  0.11218  3.63995  2.94742     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     25   3.04531  3.73144  0.10258  3.65148     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     26   0.12430  3.52395  2.89458  3.43954     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     27   3.59776  0.11218  3.63995  2.94742     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     28   3.59776  0.11218  3.63995  2.94742     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     29   3.59776  0.11218  3.63995  2.94742     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     30   3.04531  3.73144  0.10258  3.65148     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     31   2.75233  0.41169  2.82025  1.54131     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     32   3.23608  2.68870  3.27851  0.15662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     33   3.04531  3.73144  0.10258  3.65148     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     34   0.12430  3.52395  2.89458  3.43954     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     35   0.12430  3.52395  2.89458  3.43954     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     36   3.23608  2.68870  3.27851  0.15662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     37   3.23608  2.68870  3.27851  0.15662     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     38   3.23608  2.68870  3.27851  0.15662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     39   0.12430  3.52395  2.89458  3.43954     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     40   0.12430  3.52395  2.89458  3.43954     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     41   3.04531  3.73144  0.10258  3.65148     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     42   3.59776  0.11218  3.63995  2.94742     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     43   0.12430  3.52395  2.89458  3.43954     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     44   3.23608  2.68870  3.27851  0.15662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03385  4.09578  4.09578  1.46634  0.26236  1.09861  0.40547
     45   0.12430  3.52395  2.89458  3.43954     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01707  4.07899        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiver_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:51 2012
NSEQ  30
EFFN  3.277588
CKSUM 2425933469
STATS LOCAL MSV       -8.2755  0.71933
STATS LOCAL VITERBI   -7.7804  0.71933
STATS LOCAL FORWARD   -4.0974  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.20618  1.26770  1.40145  1.75480
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  0.00000        *
      1   1.36735  2.65257  0.52169  2.51047      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      2   3.41634  0.13223  3.46651  2.81677      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      3   2.93735  3.57297  0.11879  3.47612      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      4   3.41634  0.13223  3.46651  2.81677      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      5   2.93735  3.57297  0.11879  3.47612      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      6   0.14383  3.36572  2.79247  3.26601      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      7   3.41634  0.13223  3.46651  2.81677      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      8   3.41634  0.13223  3.46651  2.81677      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
      9   3.07395  2.58581  3.12266  0.18106      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     10   3.41634  0.13223  3.46651  2.81677     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     11   0.14383  3.36572  2.79247  3.26601     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     12   2.93735  3.57297  0.11879  3.47612     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     13   0.14383  3.36572  2.79247  3.26601     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     14   3.07395  2.58581  3.12266  0.18106     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     15   3.41634  0.13223  3.46651  2.81677     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     16   0.14383  3.36572  2.79247  3.26601     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     17   2.93735  3.57297  0.11879  3.47612     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     18   0.14383  3.36572  2.79247  3.26601     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     19   3.41634  0.13223  3.46651  2.81677     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     20   2.93735  3.57297  0.11879  3.47612     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     21   0.14383  3.36572  2.79247  3.26601     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     22   2.93735  3.57297  0.11879  3.47612     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     23   0.14383  3.36572  2.79247  3.26601     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     24   3.41634  0.13223  3.46651  2.81677     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     25   2.93735  3.57297  0.11879  3.47612     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     26   0.14383  3.36572  2.79247  3.26601     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     27   3.41634  0.13223  3.46651  2.81677     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     28   3.41634  0.13223  3.46651  2.81677     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     29   3.41634  0.13223  3.46651  2.81677     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     30   2.93735  3.57297  0.11879  3.47612     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     31   3.41634  0.13223  3.46651  2.81677     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     32   3.07395  2.58581  3.12266  0.18106     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     33   2.93735  3.57297  0.11879  3.47612     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     34   0.14383  3.36572  2.79247  3.26601     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     35   0.14383  3.36572  2.79247  3.26601     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     36   2.96771  2.33468  3.02010  0.21947     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     37   3.07395  2.58581  3.12266  0.18106     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     38   3.07395  2.58581  3.12266  0.18106     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     39   0.14383  3.36572  2.79247  3.26601     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     40   0.14383  3.36572  2.79247  3.26601     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     41   2.93735  3.57297  0.11879  3.47612     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     42   3.41634  0.13223  3.46651  2.81677     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     43   0.14383  3.36572  2.79247  3.26601     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     44   3.07395  2.58581  3.12266  0.18106     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03720  4.00325  4.00325  1.46634  0.26236  1.09861  0.40547
     45   0.14383  3.36572  2.79247  3.26601     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01877  3.98483        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fives_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:53:57 2012
NSEQ  4
EFFN  3.285156
CKSUM 1153157283
STATS LOCAL MSV       -8.1433  0.71932
STATS LOCAL VITERBI   -7.6563  0.71932
STATS LOCAL FORWARD   -3.9177  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21903  1.45908  1.52472  1.36903
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
      1   3.07642  2.58739  3.12504  0.18065      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      2   3.07642  2.58739  3.12504  0.18065      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      3   3.07642  2.58739  3.12504  0.18065      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      4   3.41917  0.13188  3.46922  2.81884      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      5   2.93908  3.57547  0.11851  3.47887      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      6   0.14350  3.36817  2.79406  3.26870      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      7   3.41917  0.13188  3.46922  2.81884      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      8   3.41917  0.13188  3.46922  2.81884      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      9   3.07642  2.58739  3.12504  0.18065      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     10   2.93908  3.57547  0.11851  3.47887     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     11   0.14350  3.36817  2.79406  3.26870     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     12   2.93908  3.57547  0.11851  3.47887     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     13   0.14350  3.36817  2.79406  3.26870     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     14   3.07642  2.58739  3.12504  0.18065     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     15   3.07642  2.58739  3.12504  0.18065     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     16   0.14350  3.36817  2.79406  3.26870     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     17   2.93908  3.57547  0.11851  3.47887     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     18   2.93908  3.57547  0.11851  3.47887     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     19   3.41917  0.13188  3.46922  2.81884     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     20   0.14350  3.36817  2.79406  3.26870     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     21   0.14350  3.36817  2.79406  3.26870     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     22   2.93908  3.57547  0.11851  3.47887     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     23   0.14350  3.36817  2.79406  3.26870     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     24   3.07642  2.58739  3.12504  0.18065     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     25   3.07642  2.58739  3.12504  0.18065     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     26   0.14350  3.36817  2.79406  3.26870     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     27   3.41917  0.13188  3.46922  2.81884     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     28   3.41917  0.13188  3.46922  2.81884     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     29   3.41917  0.13188  3.46922  2.81884     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     30   2.93908  3.57547  0.11851  3.47887     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     31   3.41917  0.13188  3.46922  2.81884     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     32   3.41917  0.13188  3.46922  2.81884     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     33   2.93908  3.57547  0.11851  3.47887     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     34   0.14350  3.36817  2.79406  3.26870     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     35   0.14350  3.36817  2.79406  3.26870     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     36   3.07642  2.58739  3.12504  0.18065     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     37   3.07642  2.58739  3.12504  0.18065     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     38   3.07642  2.58739  3.12504  0.18065     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     39   0.14350  3.36817  2.79406  3.26870     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     40   0.14350  3.36817  2.79406  3.26870     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     41   2.93908  3.57547  0.11851  3.47887     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     42   3.41917  0.13188  3.46922  2.81884     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     43   0.14350  3.36817  2.79406  3.26870     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     44   3.07642  2.58739  3.12504  0.18065     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     45   0.14350  3.36817  2.79406  3.26870     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivet_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:02 2012
NSEQ  9
EFFN  3.405762
CKSUM 1998620783
STATS LOCAL MSV       -7.7501  0.71933
STATS LOCAL VITERBI   -7.5664  0.71933
STATS LOCAL FORWARD   -4.1179  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26772  1.30941  1.54598  1.44628
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  0.00000        *
      1   3.46331  0.12666  3.51148  2.85093      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      2   3.11517  2.61202  3.16230  0.17445      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      3   2.64758  1.62824  2.71176  0.40574      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      4   2.96574  3.61431  0.11430  3.52175      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      5   0.13848  3.40650  2.81894  3.31066      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      6   3.46331  0.12666  3.51148  2.85093      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      7   3.46331  0.12666  3.51148  2.85093      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      8   3.11517  2.61202  3.16230  0.17445      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
      9   3.46331  0.12666  3.51148  2.85093      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     10   0.13848  3.40650  2.81894  3.31066     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     11   2.96574  3.61431  0.11430  3.52175     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     12   0.13848  3.40650  2.81894  3.31066     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     13   3.11517  2.61202  3.16230  0.17445     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     14   3.46331  0.12666  3.51148  2.85093     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     15   0.13848  3.40650  2.81894  3.31066     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     16   2.96574  3.61431  0.11430  3.52175     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     17   2.96574  3.61431  0.11430  3.52175     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     18   3.46331  0.12666  3.51148  2.85093     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     19   0.13848  3.40650  2.81894  3.31066     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     20   0.13848  3.40650  2.81894  3.31066     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     21   2.96574  3.61431  0.11430  3.52175     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     22   1.74479  2.89395  0.34711  2.76092     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     23   3.46331  0.12666  3.51148  2.85093     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     24   3.11517  2.61202  3.16230  0.17445     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     25   0.13848  3.40650  2.81894  3.31066     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     26   3.46331  0.12666  3.51148  2.85093     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     27   3.46331  0.12666  3.51148  2.85093     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     28   3.46331  0.12666  3.51148  2.85093     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     29   2.96574  3.61431  0.11430  3.52175     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     30   3.46331  0.12666  3.51148  2.85093     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     31   3.11517  2.61202  3.16230  0.17445     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     32   2.96574  3.61431  0.11430  3.52175     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     33   0.13848  3.40650  2.81894  3.31066     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     34   0.13848  3.40650  2.81894  3.31066     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     35   3.11517  2.61202  3.16230  0.17445     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     36   3.11517  2.61202  3.16230  0.17445     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     37   3.11517  2.61202  3.16230  0.17445     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     38   0.13848  3.40650  2.81894  3.31066     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     39   0.13848  3.40650  2.81894  3.31066     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     40   2.96574  3.61431  0.11430  3.52175     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     41   3.46331  0.12666  3.51148  2.85093     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     42   0.13848  3.40650  2.81894  3.31066     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     43   3.11517  2.61202  3.16230  0.17445     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     44   0.13848  3.40650  2.81894  3.31066     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03633  4.02638  4.02638  1.46634  0.26236  1.09861  0.40547
     45   3.11517  2.61202  3.16230  0.17445     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01833  4.00838        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fiveu_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:08 2012
NSEQ  3
EFFN  3.000000
CKSUM 1112863540
STATS LOCAL MSV       -7.9703  0.72001
STATS LOCAL VITERBI   -7.7320  0.72001
STATS LOCAL FORWARD   -3.8267  0.72001
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16711  1.27728  1.44572  1.74661
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fivev_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:14 2012
NSEQ  3
EFFN  3.000000
CKSUM 2351947980
STATS LOCAL MSV       -8.2579  0.72001
STATS LOCAL VITERBI   -7.8277  0.72001
STATS LOCAL FORWARD   -4.0042  0.72001
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16841  1.27582  1.44578  1.74654
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_forty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:27 2012
NSEQ  3
EFFN  3.000000
CKSUM 177781798
STATS LOCAL MSV       -7.9280  0.72034
STATS LOCAL VITERBI   -7.6927  0.72034
STATS LOCAL FORWARD   -3.8615  0.72034
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16587  1.24219  1.44401  1.81022
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.43223  0.62271  2.50508  1.22417     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:23 2012
NSEQ  2
EFFN  2.000000
CKSUM 3833065457
STATS LOCAL MSV       -7.5228  0.72841
STATS LOCAL VITERBI   -8.1928  0.72841
STATS LOCAL FORWARD   -3.5857  0.72841
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26812  1.40241  1.36693  1.52443
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   1.03732  1.95876  1.96551  1.00928      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:38:52 2012
NSEQ  3
EFFN  3.000000
CKSUM 1191930638
STATS LOCAL MSV       -8.2239  0.72118
STATS LOCAL VITERBI   -7.7053  0.72118
STATS LOCAL FORWARD   -4.0150  0.72118
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.13466  1.28437  1.57340  1.63832
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.11048  0.71234  1.38751  1.97595      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.66361  1.42357  2.15007  2.05820     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyfoura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:38:28 2012
NSEQ  5
EFFN  3.413086
CKSUM 1013805944
STATS LOCAL MSV       -7.6463  0.71933
STATS LOCAL VITERBI   -7.8316  0.71933
STATS LOCAL FORWARD   -4.0407  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28408  1.29592  1.36697  1.63695
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  0.00000        *
      1   0.34579  2.85483  1.77608  2.72608      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      2   2.73556  0.38295  2.80366  1.64658      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      3   2.96731  3.61661  0.11405  3.52429      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      4   3.46593  0.12636  3.51399  2.85283      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      5   2.96731  3.61661  0.11405  3.52429      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      6   0.13819  3.40877  2.82041  3.31315      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      7   3.46593  0.12636  3.51399  2.85283      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      8   3.46593  0.12636  3.51399  2.85283      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
      9   3.11748  2.61349  3.16453  0.17409      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     10   3.46593  0.12636  3.51399  2.85283     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     11   0.13819  3.40877  2.82041  3.31315     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     12   2.96731  3.61661  0.11405  3.52429     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     13   0.13819  3.40877  2.82041  3.31315     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     14   3.11748  2.61349  3.16453  0.17409     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     15   3.46593  0.12636  3.51399  2.85283     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     16   0.13819  3.40877  2.82041  3.31315     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     17   2.96731  3.61661  0.11405  3.52429     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     18   0.13819  3.40877  2.82041  3.31315     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     19   3.46593  0.12636  3.51399  2.85283     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     20   2.96731  3.61661  0.11405  3.52429     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     21   3.11748  2.61349  3.16453  0.17409     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     22   2.96731  3.61661  0.11405  3.52429     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     23   2.96731  3.61661  0.11405  3.52429     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     24   2.73556  0.38295  2.80366  1.64658     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     25   2.96731  3.61661  0.11405  3.52429     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     26   0.13819  3.40877  2.82041  3.31315     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     27   3.46593  0.12636  3.51399  2.85283     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     28   3.46593  0.12636  3.51399  2.85283     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     29   3.46593  0.12636  3.51399  2.85283     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     30   2.96731  3.61661  0.11405  3.52429     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     31   3.46593  0.12636  3.51399  2.85283     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     32   3.11748  2.61349  3.16453  0.17409     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     33   2.96731  3.61661  0.11405  3.52429     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     34   0.13819  3.40877  2.82041  3.31315     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     35   0.13819  3.40877  2.82041  3.31315     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     36   3.11748  2.61349  3.16453  0.17409     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     37   3.11748  2.61349  3.16453  0.17409     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     38   3.11748  2.61349  3.16453  0.17409     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     39   0.13819  3.40877  2.82041  3.31315     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     40   0.13819  3.40877  2.82041  3.31315     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     41   2.96731  3.61661  0.11405  3.52429     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     42   3.46593  0.12636  3.51399  2.85283     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     43   0.13819  3.40877  2.82041  3.31315     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     44   3.11748  2.61349  3.16453  0.17409     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03628  4.02769  4.02769  1.46634  0.26236  1.09861  0.40547
     45   0.13819  3.40877  2.82041  3.31315     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01831  4.00971        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyfourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:38:39 2012
NSEQ  2
EFFN  2.000000
CKSUM 1268375051
STATS LOCAL MSV       -7.6474  0.72924
STATS LOCAL VITERBI   -8.4367  0.72924
STATS LOCAL FORWARD   -3.2953  0.72924
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.30102  1.30681  1.42415  1.53087
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   1.01448  1.11006  1.95471  1.79419      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   1.01448  1.11006  1.95471  1.79419      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:33 2012
NSEQ  4
EFFN  3.339844
CKSUM 2409178545
STATS LOCAL MSV       -8.1050  0.71932
STATS LOCAL VITERBI   -7.6212  0.71932
STATS LOCAL FORWARD   -4.1599  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.25227  1.39140  1.37276  1.55112
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
      1   0.97435  2.14484  2.16029  0.94114      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      2   3.09414  2.59866  3.14209  0.17779      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      3   2.95135  3.59331  0.11655  3.49856      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      4   3.43942  0.12946  3.48861  2.83359      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      5   2.95135  3.59331  0.11655  3.49856      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      6   0.14117  3.38574  2.80548  3.28793      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      7   3.43942  0.12946  3.48861  2.83359      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      8   3.43942  0.12946  3.48861  2.83359      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      9   3.09414  2.59866  3.14209  0.17779      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     10   3.43942  0.12946  3.48861  2.83359     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     11   0.14117  3.38574  2.80548  3.28793     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     12   2.95135  3.59331  0.11655  3.49856     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     13   0.14117  3.38574  2.80548  3.28793     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     14   2.95135  3.59331  0.11655  3.49856     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     15   3.43942  0.12946  3.48861  2.83359     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     16   0.14117  3.38574  2.80548  3.28793     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     17   2.95135  3.59331  0.11655  3.49856     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     18   2.95135  3.59331  0.11655  3.49856     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     19   3.09414  2.59866  3.14209  0.17779     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     20   2.95135  3.59331  0.11655  3.49856     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     21   0.14117  3.38574  2.80548  3.28793     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     22   2.95135  3.59331  0.11655  3.49856     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     23   0.14117  3.38574  2.80548  3.28793     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     24   3.43942  0.12946  3.48861  2.83359     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     25   3.09414  2.59866  3.14209  0.17779     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     26   0.14117  3.38574  2.80548  3.28793     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     27   3.43942  0.12946  3.48861  2.83359     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     28   3.43942  0.12946  3.48861  2.83359     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     29   3.43942  0.12946  3.48861  2.83359     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     30   2.95135  3.59331  0.11655  3.49856     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     31   3.43942  0.12946  3.48861  2.83359     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     32   3.09414  2.59866  3.14209  0.17779     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     33   2.95135  3.59331  0.11655  3.49856     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     34   0.14117  3.38574  2.80548  3.28793     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     35   0.14117  3.38574  2.80548  3.28793     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     36   3.09414  2.59866  3.14209  0.17779     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     37   3.09414  2.59866  3.14209  0.17779     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     38   3.09414  2.59866  3.14209  0.17779     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     39   0.14117  3.38574  2.80548  3.28793     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     40   0.14117  3.38574  2.80548  3.28793     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     41   2.95135  3.59331  0.11655  3.49856     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     42   3.43942  0.12946  3.48861  2.83359     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     43   0.14117  3.38574  2.80548  3.28793     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     44   3.09414  2.59866  3.14209  0.17779     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     45   0.14117  3.38574  2.80548  3.28793     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyonea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:39 2012
NSEQ  3
EFFN  3.000000
CKSUM 3366742742
STATS LOCAL MSV       -8.0336  0.72055
STATS LOCAL VITERBI   -7.7232  0.72055
STATS LOCAL FORWARD   -4.1900  0.72055
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.30370  1.20720  1.50925  1.56846
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.54133  2.56226  1.37841  2.42004     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyoneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:44 2012
NSEQ  3
EFFN  3.000000
CKSUM 929202663
STATS LOCAL MSV       -8.0030  0.72088
STATS LOCAL VITERBI   -7.9152  0.72088
STATS LOCAL FORWARD   -4.0145  0.72088
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27679  1.32055  1.55992  1.41088
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.10082  2.21882  0.69930  1.30206     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:13 2012
NSEQ  4
EFFN  3.386719
CKSUM 506096181
STATS LOCAL MSV       -7.4774  0.71932
STATS LOCAL VITERBI   -7.6569  0.71932
STATS LOCAL FORWARD   -4.1355  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27567  1.14533  1.52677  1.68524
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  0.00000        *
      1   2.64800  0.44394  2.71770  1.50655      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      2   3.10913  2.60819  3.15650  0.17540      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      3   3.45647  0.12746  3.50493  2.84597      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      4   3.45647  0.12746  3.50493  2.84597      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      5   2.96162  3.60830  0.11494  3.51511      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      6   0.13925  3.40055  2.81508  3.30414      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      7   3.45647  0.12746  3.50493  2.84597      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      8   3.45647  0.12746  3.50493  2.84597      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
      9   3.10913  2.60819  3.15650  0.17540      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     10   3.45647  0.12746  3.50493  2.84597     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     11   2.96162  3.60830  0.11494  3.51511     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     12   2.96162  3.60830  0.11494  3.51511     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     13   0.13925  3.40055  2.81508  3.30414     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     14   3.10913  2.60819  3.15650  0.17540     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     15   3.45647  0.12746  3.50493  2.84597     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     16   0.13925  3.40055  2.81508  3.30414     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     17   2.96162  3.60830  0.11494  3.51511     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     18   0.13925  3.40055  2.81508  3.30414     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     19   3.45647  0.12746  3.50493  2.84597     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     20   2.96162  3.60830  0.11494  3.51511     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     21   0.13925  3.40055  2.81508  3.30414     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     22   2.96162  3.60830  0.11494  3.51511     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     23   0.13925  3.40055  2.81508  3.30414     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     24   3.45647  0.12746  3.50493  2.84597     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     25   3.10913  2.60819  3.15650  0.17540     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     26   0.13925  3.40055  2.81508  3.30414     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     27   3.45647  0.12746  3.50493  2.84597     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     28   3.45647  0.12746  3.50493  2.84597     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     29   3.45647  0.12746  3.50493  2.84597     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     30   2.96162  3.60830  0.11494  3.51511     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     31   3.45647  0.12746  3.50493  2.84597     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     32   2.41720  0.96408  2.48911  0.80629     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     33   2.96162  3.60830  0.11494  3.51511     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     34   0.13925  3.40055  2.81508  3.30414     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     35   0.13925  3.40055  2.81508  3.30414     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     36   3.45647  0.12746  3.50493  2.84597     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     37   3.10913  2.60819  3.15650  0.17540     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     38   3.10913  2.60819  3.15650  0.17540     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     39   0.13925  3.40055  2.81508  3.30414     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     40   0.13925  3.40055  2.81508  3.30414     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     41   2.96162  3.60830  0.11494  3.51511     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     42   3.45647  0.12746  3.50493  2.84597     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     43   0.13925  3.40055  2.81508  3.30414     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     44   3.10913  2.60819  3.15650  0.17540     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02298  4.02298  1.46634  0.26236  1.09861  0.40547
     45   0.13925  3.40055  2.81508  3.30414     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00492        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:39:02 2012
NSEQ  5
EFFN  3.520508
CKSUM 110130574
STATS LOCAL MSV       -7.5423  0.71933
STATS LOCAL VITERBI   -7.7453  0.71933
STATS LOCAL FORWARD   -4.2471  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26520  1.20006  1.54145  1.59667
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  0.00000        *
      1   2.47058  0.72118  2.54263  1.04803      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      2   3.15091  2.63471  3.19667  0.16895      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      3   3.50359  0.12211  3.55001  2.88003      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      4   3.50359  0.12211  3.55001  2.88003      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      5   2.98981  3.64957  0.11061  3.56075      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      6   0.13406  3.44156  2.84159  3.34909      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      7   3.50359  0.12211  3.55001  2.88003      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      8   3.50359  0.12211  3.55001  2.88003      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
      9   3.15091  2.63471  3.19667  0.16895      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     10   3.50359  0.12211  3.55001  2.88003     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     11   1.86609  2.99735  0.30300  2.86904     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     12   2.98981  3.64957  0.11061  3.56075     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     13   0.13406  3.44156  2.84159  3.34909     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     14   3.15091  2.63471  3.19667  0.16895     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     15   3.50359  0.12211  3.55001  2.88003     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     16   0.13406  3.44156  2.84159  3.34909     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     17   2.98981  3.64957  0.11061  3.56075     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     18   0.13406  3.44156  2.84159  3.34909     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     19   3.50359  0.12211  3.55001  2.88003     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     20   2.98981  3.64957  0.11061  3.56075     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     21   0.13406  3.44156  2.84159  3.34909     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     22   2.98981  3.64957  0.11061  3.56075     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     23   0.13406  3.44156  2.84159  3.34909     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     24   3.50359  0.12211  3.55001  2.88003     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     25   3.15091  2.63471  3.19667  0.16895     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     26   0.13406  3.44156  2.84159  3.34909     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     27   3.50359  0.12211  3.55001  2.88003     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     28   3.50359  0.12211  3.55001  2.88003     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     29   3.50359  0.12211  3.55001  2.88003     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     30   2.98981  3.64957  0.11061  3.56075     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     31   3.50359  0.12211  3.55001  2.88003     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     32   3.15091  2.63471  3.19667  0.16895     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     33   2.98981  3.64957  0.11061  3.56075     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     34   0.13406  3.44156  2.84159  3.34909     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     35   0.13406  3.44156  2.84159  3.34909     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     36   2.46474  0.73956  2.53682  1.02575     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     37   3.15091  2.63471  3.19667  0.16895     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     38   3.15091  2.63471  3.19667  0.16895     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     39   0.13406  3.44156  2.84159  3.34909     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     40   0.13406  3.44156  2.84159  3.34909     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     41   2.98981  3.64957  0.11061  3.56075     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     42   3.50359  0.12211  3.55001  2.88003     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     43   0.13406  3.44156  2.84159  3.34909     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     44   3.15091  2.63471  3.19667  0.16895     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03559  4.04664  4.04664  1.46634  0.26236  1.09861  0.40547
     45   0.13406  3.44156  2.84159  3.34909     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01795  4.02901        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortythreea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:38:10 2012
NSEQ  2
EFFN  2.000000
CKSUM 3285087360
STATS LOCAL MSV       -7.4672  0.72897
STATS LOCAL VITERBI   -8.3344  0.72897
STATS LOCAL FORWARD   -3.4614  0.72897
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26742  1.43435  1.48777  1.36926
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   1.01448  1.11006  1.95471  1.79419      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   0.23862  2.84929  2.43386  2.70756      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.53331  3.02441  0.20344  2.88069      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.53331  3.02441  0.20344  2.88069     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.57915  2.25909  2.64442  0.28946     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   0.23862  2.84929  2.43386  2.70756     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortythreeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:38:18 2012
NSEQ  3
EFFN  3.000000
CKSUM 1330444769
STATS LOCAL MSV       -8.1653  0.72121
STATS LOCAL VITERBI   -7.7606  0.72121
STATS LOCAL FORWARD   -3.9063  0.72121
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24373  1.24730  1.57852  1.52265
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.66361  1.42357  2.15007  2.05820     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.12334  2.11792  1.37287  0.67982     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fortytwoa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:57 2012
NSEQ  3
EFFN  3.000000
CKSUM 2178489850
STATS LOCAL MSV       -8.1532  0.72099
STATS LOCAL VITERBI   -7.7294  0.72099
STATS LOCAL FORWARD   -3.9694  0.72099
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.20847  1.23061  1.78114  1.42385
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.86982  3.47591  0.13017  3.36931      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   1.32295  0.73131  2.17864  1.97201     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_foura_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:49:53 2012
NSEQ  15
EFFN  3.504639
CKSUM 2507778126
STATS LOCAL MSV       -7.5617  0.71933
STATS LOCAL VITERBI   -7.7985  0.71933
STATS LOCAL FORWARD   -4.1327  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24885  1.29821  1.59403  1.43953
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  0.00000        *
      1   3.14603  2.63161  3.19198  0.16969      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      2   3.14603  2.63161  3.19198  0.16969      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      3   3.14603  2.63161  3.19198  0.16969      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      4   3.49812  0.12271  3.54478  2.87609      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      5   2.98656  3.64479  0.11111  3.55546      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      6   0.13465  3.43679  2.83851  3.34386      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      7   3.49812  0.12271  3.54478  2.87609      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      8   3.49812  0.12271  3.54478  2.87609      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
      9   3.14603  2.63161  3.19198  0.16969      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     10   2.98656  3.64479  0.11111  3.55546     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     11   0.13465  3.43679  2.83851  3.34386     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     12   0.13465  3.43679  2.83851  3.34386     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     13   3.49812  0.12271  3.54478  2.87609     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     14   3.14603  2.63161  3.19198  0.16969     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     15   3.49812  0.12271  3.54478  2.87609     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     16   0.13465  3.43679  2.83851  3.34386     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     17   2.98656  3.64479  0.11111  3.55546     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     18   0.13465  3.43679  2.83851  3.34386     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     19   3.49812  0.12271  3.54478  2.87609     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     20   2.98656  3.64479  0.11111  3.55546     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     21   3.14603  2.63161  3.19198  0.16969     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     22   2.98656  3.64479  0.11111  3.55546     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     23   0.13465  3.43679  2.83851  3.34386     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     24   0.85624  1.61968  1.42525  1.98899     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     25   2.62143  1.53034  2.68674  0.44202     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     26   0.13465  3.43679  2.83851  3.34386     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     27   3.49812  0.12271  3.54478  2.87609     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     28   3.49812  0.12271  3.54478  2.87609     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     29   3.49812  0.12271  3.54478  2.87609     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     30   2.98656  3.64479  0.11111  3.55546     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     31   3.49812  0.12271  3.54478  2.87609     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     32   3.14603  2.63161  3.19198  0.16969     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     33   2.98656  3.64479  0.11111  3.55546     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     34   0.13465  3.43679  2.83851  3.34386     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     35   0.13465  3.43679  2.83851  3.34386     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     36   3.49812  0.12271  3.54478  2.87609     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     37   3.14603  2.63161  3.19198  0.16969     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     38   3.14603  2.63161  3.19198  0.16969     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     39   0.13465  3.43679  2.83851  3.34386     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     40   0.13465  3.43679  2.83851  3.34386     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     41   2.98656  3.64479  0.11111  3.55546     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     42   3.49812  0.12271  3.54478  2.87609     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     43   0.13465  3.43679  2.83851  3.34386     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     44   3.14603  2.63161  3.19198  0.16969     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03569  4.04386  4.04386  1.46634  0.26236  1.09861  0.40547
     45   0.13465  3.43679  2.83851  3.34386     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01800  4.02618        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:04 2012
NSEQ  3
EFFN  3.000000
CKSUM 1737265017
STATS LOCAL MSV       -7.9324  0.72043
STATS LOCAL VITERBI   -7.8211  0.72043
STATS LOCAL FORWARD   -3.8393  0.72043
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22596  1.26330  1.69225  1.42836
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:12 2012
NSEQ  12
EFFN  3.524414
CKSUM 2964998357
STATS LOCAL MSV       -7.5619  0.71932
STATS LOCAL VITERBI   -7.8274  0.71932
STATS LOCAL FORWARD   -4.3051  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27870  1.36878  1.61837  1.31318
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  0.00000        *
      1   3.15211  2.63547  3.19782  0.16877      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      2   3.15211  2.63547  3.19782  0.16877      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      3   3.15211  2.63547  3.19782  0.16877      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      4   2.62700  1.53267  2.69220  0.44003      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      5   2.99061  3.65075  0.11049  3.56205      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      6   0.13392  3.44273  2.84235  3.35037      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      7   3.50494  0.12196  3.55129  2.88100      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      8   3.50494  0.12196  3.55129  2.88100      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
      9   3.15211  2.63547  3.19782  0.16877      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     10   2.99061  3.65075  0.11049  3.56205     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     11   0.13392  3.44273  2.84235  3.35037     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     12   0.13392  3.44273  2.84235  3.35037     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     13   3.50494  0.12196  3.55129  2.88100     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     14   3.15211  2.63547  3.19782  0.16877     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     15   3.50494  0.12196  3.55129  2.88100     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     16   0.13392  3.44273  2.84235  3.35037     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     17   1.96046  3.06086  0.27540  2.93570     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     18   0.29933  2.95963  1.90905  2.83659     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     19   3.50494  0.12196  3.55129  2.88100     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     20   2.99061  3.65075  0.11049  3.56205     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     21   3.15211  2.63547  3.19782  0.16877     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     22   2.99061  3.65075  0.11049  3.56205     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     23   0.13392  3.44273  2.84235  3.35037     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     24   3.15211  2.63547  3.19782  0.16877     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     25   3.15211  2.63547  3.19782  0.16877     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     26   0.13392  3.44273  2.84235  3.35037     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     27   3.50494  0.12196  3.55129  2.88100     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     28   3.50494  0.12196  3.55129  2.88100     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     29   3.50494  0.12196  3.55129  2.88100     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     30   2.99061  3.65075  0.11049  3.56205     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     31   3.50494  0.12196  3.55129  2.88100     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     32   3.15211  2.63547  3.19782  0.16877     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     33   2.99061  3.65075  0.11049  3.56205     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     34   0.13392  3.44273  2.84235  3.35037     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     35   0.13392  3.44273  2.84235  3.35037     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     36   3.50494  0.12196  3.55129  2.88100     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     37   3.15211  2.63547  3.19782  0.16877     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     38   3.15211  2.63547  3.19782  0.16877     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     39   0.13392  3.44273  2.84235  3.35037     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     40   0.13392  3.44273  2.84235  3.35037     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     41   2.99061  3.65075  0.11049  3.56205     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     42   3.50494  0.12196  3.55129  2.88100     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     43   0.13392  3.44273  2.84235  3.35037     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     44   3.15211  2.63547  3.19782  0.16877     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03556  4.04733  4.04733  1.46634  0.26236  1.09861  0.40547
     45   0.13392  3.44273  2.84235  3.35037     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01794  4.02970        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:19 2012
NSEQ  2
EFFN  2.000000
CKSUM 2411741823
STATS LOCAL MSV       -7.4996  0.72813
STATS LOCAL VITERBI   -8.2421  0.72813
STATS LOCAL FORWARD   -3.5693  0.72813
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29173  1.34306  1.49811  1.42459
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.53331  3.02441  0.20344  2.88069      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_foure_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:27 2012
NSEQ  9
EFFN  3.555176
CKSUM 2325224462
STATS LOCAL MSV       -7.6336  0.71932
STATS LOCAL VITERBI   -7.6152  0.71932
STATS LOCAL FORWARD   -4.2181  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29437  1.30759  1.70004  1.29908
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  0.00000        *
      1   3.16150  2.64143  3.20685  0.16736      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      2   1.60524  2.26043  2.40622  0.50303      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      3   3.16150  2.64143  3.20685  0.16736      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      4   3.16150  2.64143  3.20685  0.16736      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      5   2.99686  3.65992  0.10956  3.57220      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      6   0.13279  3.45189  2.84825  3.36042      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      7   3.51544  0.12080  3.56134  2.88856      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      8   3.51544  0.12080  3.56134  2.88856      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
      9   3.16150  2.64143  3.20685  0.16736      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     10   3.51544  0.12080  3.56134  2.88856     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     11   0.13279  3.45189  2.84825  3.36042     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     12   0.13279  3.45189  2.84825  3.36042     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     13   3.51544  0.12080  3.56134  2.88856     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     14   3.16150  2.64143  3.20685  0.16736     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     15   3.51544  0.12080  3.56134  2.88856     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     16   0.13279  3.45189  2.84825  3.36042     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     17   2.99686  3.65992  0.10956  3.57220     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     18   3.16150  2.64143  3.20685  0.16736     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     19   3.51544  0.12080  3.56134  2.88856     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     20   2.99686  3.65992  0.10956  3.57220     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     21   0.67646  2.27465  2.22456  1.27069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     22   2.99686  3.65992  0.10956  3.57220     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     23   0.13279  3.45189  2.84825  3.36042     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     24   3.16150  2.64143  3.20685  0.16736     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     25   3.16150  2.64143  3.20685  0.16736     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     26   0.13279  3.45189  2.84825  3.36042     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     27   3.51544  0.12080  3.56134  2.88856     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     28   3.51544  0.12080  3.56134  2.88856     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     29   3.51544  0.12080  3.56134  2.88856     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     30   2.99686  3.65992  0.10956  3.57220     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     31   3.51544  0.12080  3.56134  2.88856     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     32   3.16150  2.64143  3.20685  0.16736     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     33   2.99686  3.65992  0.10956  3.57220     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     34   0.13279  3.45189  2.84825  3.36042     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     35   0.13279  3.45189  2.84825  3.36042     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     36   3.51544  0.12080  3.56134  2.88856     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     37   3.16150  2.64143  3.20685  0.16736     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     38   3.16150  2.64143  3.20685  0.16736     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     39   0.13279  3.45189  2.84825  3.36042     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     40   0.13279  3.45189  2.84825  3.36042     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     41   2.99686  3.65992  0.10956  3.57220     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     42   3.51544  0.12080  3.56134  2.88856     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     43   0.13279  3.45189  2.84825  3.36042     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     44   3.16150  2.64143  3.20685  0.16736     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03537  4.05268  4.05268  1.46634  0.26236  1.09861  0.40547
     45   0.13279  3.45189  2.84825  3.36042     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01784  4.03516        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:34 2012
NSEQ  4
EFFN  3.191406
CKSUM 3539407318
STATS LOCAL MSV       -7.9359  0.71933
STATS LOCAL VITERBI   -7.6471  0.71933
STATS LOCAL FORWARD   -4.1152  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22385  1.20875  1.52623  1.66084
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
      1   3.38354  0.13628  3.43507  2.79277      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      2   2.91732  3.54398  0.12206  3.44415      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      3   3.38354  0.13628  3.43507  2.79277      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      4   3.38354  0.13628  3.43507  2.79277      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      5   2.91732  3.54398  0.12206  3.44415      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      6   0.14770  3.33730  2.77393  3.23493      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      7   3.38354  0.13628  3.43507  2.79277      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      8   3.38354  0.13628  3.43507  2.79277      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      9   3.04545  2.56765  3.09524  0.18579      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     10   3.38354  0.13628  3.43507  2.79277     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     11   0.14770  3.33730  2.77393  3.23493     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     12   2.91732  3.54398  0.12206  3.44415     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     13   0.14770  3.33730  2.77393  3.23493     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     14   3.04545  2.56765  3.09524  0.18579     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     15   3.38354  0.13628  3.43507  2.79277     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     16   0.14770  3.33730  2.77393  3.23493     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     17   2.91732  3.54398  0.12206  3.44415     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     18   2.91732  3.54398  0.12206  3.44415     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     19   3.04545  2.56765  3.09524  0.18579     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     20   0.14770  3.33730  2.77393  3.23493     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     21   0.14770  3.33730  2.77393  3.23493     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     22   2.91732  3.54398  0.12206  3.44415     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     23   0.14770  3.33730  2.77393  3.23493     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     24   3.38354  0.13628  3.43507  2.79277     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     25   3.04545  2.56765  3.09524  0.18579     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     26   0.14770  3.33730  2.77393  3.23493     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     27   3.38354  0.13628  3.43507  2.79277     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     28   3.38354  0.13628  3.43507  2.79277     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     29   3.38354  0.13628  3.43507  2.79277     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     30   2.91732  3.54398  0.12206  3.44415     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     31   3.38354  0.13628  3.43507  2.79277     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     32   3.04545  2.56765  3.09524  0.18579     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     33   2.91732  3.54398  0.12206  3.44415     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     34   0.14770  3.33730  2.77393  3.23493     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     35   0.14770  3.33730  2.77393  3.23493     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     36   3.38354  0.13628  3.43507  2.79277     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     37   3.04545  2.56765  3.09524  0.18579     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     38   3.04545  2.56765  3.09524  0.18579     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     39   0.14770  3.33730  2.77393  3.23493     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     40   0.14770  3.33730  2.77393  3.23493     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     41   2.91732  3.54398  0.12206  3.44415     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     42   3.38354  0.13628  3.43507  2.79277     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     43   0.14770  3.33730  2.77393  3.23493     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     44   3.04545  2.56765  3.09524  0.18579     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     45   0.14770  3.33730  2.77393  3.23493     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:42 2012
NSEQ  4
EFFN  3.222656
CKSUM 3193793341
STATS LOCAL MSV       -8.0374  0.71931
STATS LOCAL VITERBI   -7.7274  0.71931
STATS LOCAL FORWARD   -4.1558  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34230  1.26497  1.45321  1.50198
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  0.00000        *
      1   3.05586  2.57429  3.10526  0.18405      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      2   3.05586  2.57429  3.10526  0.18405      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      3   2.92468  3.55461  0.12085  3.45586      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      4   3.39555  0.13478  3.44658  2.80157      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      5   0.14627  3.34770  2.78072  3.24630      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      6   0.14627  3.34770  2.78072  3.24630      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      7   3.39555  0.13478  3.44658  2.80157      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      8   3.39555  0.13478  3.44658  2.80157      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
      9   3.05586  2.57429  3.10526  0.18405      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     10   2.92468  3.55461  0.12085  3.45586     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     11   0.14627  3.34770  2.78072  3.24630     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     12   2.92468  3.55461  0.12085  3.45586     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     13   3.39555  0.13478  3.44658  2.80157     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     14   3.05586  2.57429  3.10526  0.18405     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     15   3.39555  0.13478  3.44658  2.80157     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     16   0.14627  3.34770  2.78072  3.24630     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     17   2.92468  3.55461  0.12085  3.45586     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     18   2.92468  3.55461  0.12085  3.45586     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     19   3.39555  0.13478  3.44658  2.80157     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     20   2.92468  3.55461  0.12085  3.45586     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     21   3.05586  2.57429  3.10526  0.18405     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     22   2.92468  3.55461  0.12085  3.45586     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     23   0.14627  3.34770  2.78072  3.24630     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     24   3.39555  0.13478  3.44658  2.80157     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     25   3.05586  2.57429  3.10526  0.18405     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     26   0.14627  3.34770  2.78072  3.24630     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     27   3.39555  0.13478  3.44658  2.80157     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     28   3.39555  0.13478  3.44658  2.80157     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     29   3.39555  0.13478  3.44658  2.80157     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     30   2.92468  3.55461  0.12085  3.45586     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     31   3.39555  0.13478  3.44658  2.80157     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     32   3.05586  2.57429  3.10526  0.18405     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     33   2.92468  3.55461  0.12085  3.45586     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     34   0.14627  3.34770  2.78072  3.24630     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     35   0.14627  3.34770  2.78072  3.24630     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     36   3.39555  0.13478  3.44658  2.80157     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     37   3.05586  2.57429  3.10526  0.18405     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     38   3.05586  2.57429  3.10526  0.18405     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     39   0.14627  3.34770  2.78072  3.24630     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     40   0.14627  3.34770  2.78072  3.24630     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     41   2.92468  3.55461  0.12085  3.45586     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     42   3.39555  0.13478  3.44658  2.80157     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     43   0.14627  3.34770  2.78072  3.24630     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     44   3.05586  2.57429  3.10526  0.18405     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03758  3.99317  3.99317  1.46634  0.26236  1.09861  0.40547
     45   0.14627  3.34770  2.78072  3.24630     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01897  3.97456        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:49 2012
NSEQ  5
EFFN  3.618164
CKSUM 1272895122
STATS LOCAL MSV       -7.8380  0.71931
STATS LOCAL VITERBI   -7.5794  0.71931
STATS LOCAL FORWARD   -4.2052  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.35166  1.37041  1.65451  1.21739
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  0.00000        *
      1   0.78521  2.22532  2.20420  1.12207      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      2   3.18050  2.65347  3.22511  0.16455      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      3   3.18050  2.65347  3.22511  0.16455      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      4   3.18050  2.65347  3.22511  0.16455      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      5   3.00938  3.67836  0.10771  3.59263      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      6   0.13055  3.47036  2.86015  3.38070      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      7   3.53660  0.11852  3.58156  2.90375      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      8   3.53660  0.11852  3.58156  2.90375      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
      9   3.18050  2.65347  3.22511  0.16455      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     10   3.53660  0.11852  3.58156  2.90375     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     11   0.13055  3.47036  2.86015  3.38070     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     12   1.13075  2.61649  0.65419  2.47353     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     13   3.53660  0.11852  3.58156  2.90375     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     14   3.18050  2.65347  3.22511  0.16455     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     15   3.53660  0.11852  3.58156  2.90375     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     16   0.13055  3.47036  2.86015  3.38070     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     17   3.00938  3.67836  0.10771  3.59263     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     18   3.18050  2.65347  3.22511  0.16455     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     19   3.53660  0.11852  3.58156  2.90375     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     20   3.00938  3.67836  0.10771  3.59263     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     21   3.18050  2.65347  3.22511  0.16455     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     22   3.00938  3.67836  0.10771  3.59263     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     23   0.13055  3.47036  2.86015  3.38070     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     24   3.18050  2.65347  3.22511  0.16455     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     25   3.18050  2.65347  3.22511  0.16455     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     26   0.13055  3.47036  2.86015  3.38070     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     27   3.53660  0.11852  3.58156  2.90375     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     28   3.53660  0.11852  3.58156  2.90375     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     29   3.53660  0.11852  3.58156  2.90375     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     30   3.00938  3.67836  0.10771  3.59263     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     31   3.53660  0.11852  3.58156  2.90375     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     32   3.18050  2.65347  3.22511  0.16455     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     33   3.00938  3.67836  0.10771  3.59263     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     34   0.13055  3.47036  2.86015  3.38070     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     35   0.13055  3.47036  2.86015  3.38070     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     36   3.18050  2.65347  3.22511  0.16455     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     37   3.18050  2.65347  3.22511  0.16455     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     38   3.18050  2.65347  3.22511  0.16455     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     39   0.13055  3.47036  2.86015  3.38070     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     40   0.13055  3.47036  2.86015  3.38070     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     41   3.00938  3.67836  0.10771  3.59263     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     42   3.53660  0.11852  3.58156  2.90375     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     43   0.13055  3.47036  2.86015  3.38070     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     44   3.18050  2.65347  3.22511  0.16455     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03498  4.06357  4.06357  1.46634  0.26236  1.09861  0.40547
     45   0.13055  3.47036  2.86015  3.38070     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01764  4.04623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fouri_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:50:55 2012
NSEQ  8
EFFN  3.214844
CKSUM 1186784676
STATS LOCAL MSV       -8.2425  0.71931
STATS LOCAL VITERBI   -7.6389  0.71931
STATS LOCAL FORWARD   -4.1147  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11464  1.26796  1.60640  1.66097
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  0.00000        *
      1   3.39256  0.13515  3.44371  2.79938      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      2   3.05326  2.57263  3.10276  0.18448      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      3   0.14663  3.34511  2.77903  3.24347      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      4   3.39256  0.13515  3.44371  2.79938      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      5   2.92285  3.55196  0.12115  3.45295      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      6   0.14663  3.34511  2.77903  3.24347      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      7   3.39256  0.13515  3.44371  2.79938      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      8   3.39256  0.13515  3.44371  2.79938      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
      9   3.05326  2.57263  3.10276  0.18448      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     10   3.39256  0.13515  3.44371  2.79938     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     11   0.14663  3.34511  2.77903  3.24347     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     12   2.92285  3.55196  0.12115  3.45295     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     13   0.14663  3.34511  2.77903  3.24347     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     14   3.05326  2.57263  3.10276  0.18448     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     15   3.39256  0.13515  3.44371  2.79938     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     16   0.14663  3.34511  2.77903  3.24347     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     17   2.92285  3.55196  0.12115  3.45295     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     18   0.14663  3.34511  2.77903  3.24347     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     19   3.39256  0.13515  3.44371  2.79938     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     20   2.92285  3.55196  0.12115  3.45295     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     21   0.14663  3.34511  2.77903  3.24347     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     22   2.92285  3.55196  0.12115  3.45295     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     23   0.14663  3.34511  2.77903  3.24347     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     24   3.39256  0.13515  3.44371  2.79938     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     25   0.14663  3.34511  2.77903  3.24347     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     26   0.14663  3.34511  2.77903  3.24347     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     27   3.39256  0.13515  3.44371  2.79938     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     28   3.39256  0.13515  3.44371  2.79938     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     29   3.39256  0.13515  3.44371  2.79938     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     30   2.92285  3.55196  0.12115  3.45295     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     31   3.39256  0.13515  3.44371  2.79938     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     32   3.05326  2.57263  3.10276  0.18448     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     33   2.92285  3.55196  0.12115  3.45295     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     34   0.14663  3.34511  2.77903  3.24347     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     35   0.14663  3.34511  2.77903  3.24347     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     36   3.05326  2.57263  3.10276  0.18448     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     37   3.05326  2.57263  3.10276  0.18448     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     38   3.05326  2.57263  3.10276  0.18448     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     39   0.14663  3.34511  2.77903  3.24347     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     40   0.14663  3.34511  2.77903  3.24347     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     41   2.92285  3.55196  0.12115  3.45295     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     42   3.39256  0.13515  3.44371  2.79938     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     43   0.14663  3.34511  2.77903  3.24347     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     44   3.05326  2.57263  3.10276  0.18448     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03763  3.99173  3.99173  1.46634  0.26236  1.09861  0.40547
     45   0.14663  3.34511  2.77903  3.24347     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01899  3.97309        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourj_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:02 2012
NSEQ  3
EFFN  3.000000
CKSUM 2351947980
STATS LOCAL MSV       -8.2579  0.72001
STATS LOCAL VITERBI   -7.8277  0.72001
STATS LOCAL FORWARD   -4.0042  0.72001
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16841  1.27582  1.44578  1.74654
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.86982  3.47591  0.13017  3.36931      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourk_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:10 2012
NSEQ  3
EFFN  3.000000
CKSUM 4061155062
STATS LOCAL MSV       -8.1678  0.72014
STATS LOCAL VITERBI   -7.7322  0.72014
STATS LOCAL FORWARD   -3.9807  0.72014
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28224  1.27007  1.44862  1.57562
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourl_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:16 2012
NSEQ  3
EFFN  3.000000
CKSUM 292764534
STATS LOCAL MSV       -8.1090  0.72071
STATS LOCAL VITERBI   -7.7116  0.72071
STATS LOCAL FORWARD   -4.0241  0.72071
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22065  1.35244  1.51762  1.48228
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.43223  0.62271  2.50508  1.22417     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourm_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 1681735314
STATS LOCAL MSV       -7.3397  0.72792
STATS LOCAL VITERBI   -8.2563  0.72792
STATS LOCAL FORWARD   -3.7770  0.72792
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34610  1.29011  1.43454  1.48598
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.53331  3.02441  0.20344  2.88069      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   0.23862  2.84929  2.43386  2.70756     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourn_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:31 2012
NSEQ  4
EFFN  3.324219
CKSUM 308035123
STATS LOCAL MSV       -8.2459  0.71933
STATS LOCAL VITERBI   -7.6656  0.71933
STATS LOCAL FORWARD   -4.1464  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33918  1.38085  1.61344  1.24697
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   0.14183  3.38076  2.80224  3.28247      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   3.08911  2.59546  3.13724  0.17860      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   3.08911  2.59546  3.13724  0.17860      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.08911  2.59546  3.13724  0.17860      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   2.94787  3.58826  0.11710  3.49298      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   0.14183  3.38076  2.80224  3.28247      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.43368  0.13014  3.48311  2.82941      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   3.43368  0.13014  3.48311  2.82941      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   3.08911  2.59546  3.13724  0.17860      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   3.43368  0.13014  3.48311  2.82941     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   0.14183  3.38076  2.80224  3.28247     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   2.94787  3.58826  0.11710  3.49298     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   3.43368  0.13014  3.48311  2.82941     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.08911  2.59546  3.13724  0.17860     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   3.43368  0.13014  3.48311  2.82941     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   0.14183  3.38076  2.80224  3.28247     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   2.94787  3.58826  0.11710  3.49298     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   3.08911  2.59546  3.13724  0.17860     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   3.43368  0.13014  3.48311  2.82941     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   2.94787  3.58826  0.11710  3.49298     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   3.08911  2.59546  3.13724  0.17860     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   2.94787  3.58826  0.11710  3.49298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   0.14183  3.38076  2.80224  3.28247     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   3.08911  2.59546  3.13724  0.17860     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   3.08911  2.59546  3.13724  0.17860     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   0.14183  3.38076  2.80224  3.28247     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   3.43368  0.13014  3.48311  2.82941     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.43368  0.13014  3.48311  2.82941     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.43368  0.13014  3.48311  2.82941     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   2.94787  3.58826  0.11710  3.49298     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   3.43368  0.13014  3.48311  2.82941     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.08911  2.59546  3.13724  0.17860     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   2.94787  3.58826  0.11710  3.49298     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   0.14183  3.38076  2.80224  3.28247     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   0.14183  3.38076  2.80224  3.28247     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   3.08911  2.59546  3.13724  0.17860     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   3.08911  2.59546  3.13724  0.17860     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   0.14183  3.38076  2.80224  3.28247     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   0.14183  3.38076  2.80224  3.28247     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   2.94787  3.58826  0.11710  3.49298     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   3.43368  0.13014  3.48311  2.82941     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   0.14183  3.38076  2.80224  3.28247     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   3.08911  2.59546  3.13724  0.17860     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   0.14183  3.38076  2.80224  3.28247     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fouro_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:39 2012
NSEQ  3
EFFN  3.000000
CKSUM 156050492
STATS LOCAL MSV       -8.0097  0.72066
STATS LOCAL VITERBI   -7.7228  0.72066
STATS LOCAL FORWARD   -4.1160  0.72066
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34354  1.31352  1.69463  1.24988
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourp_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:51:45 2012
NSEQ  3
EFFN  3.000000
CKSUM 435892151
STATS LOCAL MSV       -8.2073  0.72146
STATS LOCAL VITERBI   -7.7951  0.72146
STATS LOCAL FORWARD   -4.0277  0.72146
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39771  1.35938  1.58160  1.23659
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.42752  1.34012  2.49742  0.56628      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.11867  2.11575  1.35978  0.68806      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_fourteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:33 2012
NSEQ  3
EFFN  3.000000
CKSUM 2215319068
STATS LOCAL MSV       -8.1736  0.72037
STATS LOCAL VITERBI   -7.8757  0.72037
STATS LOCAL FORWARD   -4.0709  0.72037
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22282  1.39082  1.52048  1.43496
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   0.15719  3.27118  2.73043  3.16274      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_nine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:56:58 2012
NSEQ  3
EFFN  3.000000
CKSUM 957197694
STATS LOCAL MSV       -7.8664  0.72063
STATS LOCAL VITERBI   -7.7547  0.72063
STATS LOCAL FORWARD   -4.2553  0.72063
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34194  1.38068  1.60488  1.25057
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.86982  3.47591  0.13017  3.36931     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   0.15719  3.27118  2.73043  3.16274     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   3.30705  0.14631  3.36166  2.73626     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.86982  3.47591  0.13017  3.36931     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   3.30705  0.14631  3.36166  2.73626     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   0.15719  3.27118  2.73043  3.16274     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   0.15719  3.27118  2.73043  3.16274     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_nineteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:59:36 2012
NSEQ  6
EFFN  3.249023
CKSUM 2236108995
STATS LOCAL MSV       -8.0378  0.71932
STATS LOCAL VITERBI   -7.6712  0.71932
STATS LOCAL FORWARD   -4.0582  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33869  1.34207  1.31167  1.57438
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  0.00000        *
      1   3.40558  0.13354  3.45619  2.80891      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      2   2.93080  3.56347  0.11985  3.46564      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      3   3.06457  2.57984  3.11364  0.18260      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      4   3.06457  2.57984  3.11364  0.18260      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      5   2.93080  3.56347  0.11985  3.46564      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      6   2.93080  3.56347  0.11985  3.46564      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      7   3.40558  0.13354  3.45619  2.80891      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      8   3.40558  0.13354  3.45619  2.80891      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
      9   3.06457  2.57984  3.11364  0.18260      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     10   3.40558  0.13354  3.45619  2.80891     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     11   0.14509  3.35639  2.78639  3.25580     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     12   2.93080  3.56347  0.11985  3.46564     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     13   0.14509  3.35639  2.78639  3.25580     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     14   3.06457  2.57984  3.11364  0.18260     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     15   3.40558  0.13354  3.45619  2.80891     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     16   0.14509  3.35639  2.78639  3.25580     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     17   2.93080  3.56347  0.11985  3.46564     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     18   2.93080  3.56347  0.11985  3.46564     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     19   2.93080  3.56347  0.11985  3.46564     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     20   0.14509  3.35639  2.78639  3.25580     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     21   2.93080  3.56347  0.11985  3.46564     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     22   2.93080  3.56347  0.11985  3.46564     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     23   0.14509  3.35639  2.78639  3.25580     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     24   3.06457  2.57984  3.11364  0.18260     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     25   2.81213  0.32485  2.87865  1.82586     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     26   0.14509  3.35639  2.78639  3.25580     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     27   3.40558  0.13354  3.45619  2.80891     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     28   3.40558  0.13354  3.45619  2.80891     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     29   3.40558  0.13354  3.45619  2.80891     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     30   2.93080  3.56347  0.11985  3.46564     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     31   3.40558  0.13354  3.45619  2.80891     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     32   3.40558  0.13354  3.45619  2.80891     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     33   2.93080  3.56347  0.11985  3.46564     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     34   0.14509  3.35639  2.78639  3.25580     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     35   0.14509  3.35639  2.78639  3.25580     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     36   3.06457  2.57984  3.11364  0.18260     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     37   3.06457  2.57984  3.11364  0.18260     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     38   3.06457  2.57984  3.11364  0.18260     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     39   0.14509  3.35639  2.78639  3.25580     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     40   0.14509  3.35639  2.78639  3.25580     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     41   2.93080  3.56347  0.11985  3.46564     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     42   3.40558  0.13354  3.45619  2.80891     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     43   0.14509  3.35639  2.78639  3.25580     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     44   3.06457  2.57984  3.11364  0.18260     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03739  3.99802  3.99802  1.46634  0.26236  1.09861  0.40547
     45   0.14509  3.35639  2.78639  3.25580     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01887  3.97950        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:49:27 2012
NSEQ  33
EFFN  3.782593
CKSUM 1346394840
STATS LOCAL MSV       -6.9525  0.71933
STATS LOCAL VITERBI   -7.7827  0.71933
STATS LOCAL FORWARD   -4.3549  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33115  1.23617  1.49619  1.50800
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  0.00000        *
      1   1.79792  1.68197  1.18854  1.06803      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      2   3.58965  0.11299  3.63221  2.94165      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      3   3.58965  0.11299  3.63221  2.94165      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      4   3.22866  2.68399  3.27137  0.15765      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      5   3.04057  3.72442  0.10324  3.64370      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      6   0.12511  3.51682  2.89001  3.43172      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      7   3.58965  0.11299  3.63221  2.94165      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      8   3.58965  0.11299  3.63221  2.94165      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
      9   3.22866  2.68399  3.27137  0.15765      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     10   3.58965  0.11299  3.63221  2.94165     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     11   3.04057  3.72442  0.10324  3.64370     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     12   3.04057  3.72442  0.10324  3.64370     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     13   0.12511  3.51682  2.89001  3.43172     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     14   3.22866  2.68399  3.27137  0.15765     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     15   3.58965  0.11299  3.63221  2.94165     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     16   0.12511  3.51682  2.89001  3.43172     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     17   3.04057  3.72442  0.10324  3.64370     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     18   0.70542  2.28199  2.24204  1.21141     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     19   3.09248  0.23985  3.15223  2.07858     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     20   3.04057  3.72442  0.10324  3.64370     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     21   3.22866  2.68399  3.27137  0.15765     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     22   3.04057  3.72442  0.10324  3.64370     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     23   0.12511  3.51682  2.89001  3.43172     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     24   0.86847  1.42296  1.86945  1.68632     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     25   3.22866  2.68399  3.27137  0.15765     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     26   0.12511  3.51682  2.89001  3.43172     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     27   3.58965  0.11299  3.63221  2.94165     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     28   3.58965  0.11299  3.63221  2.94165     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     29   3.58965  0.11299  3.63221  2.94165     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     30   3.04057  3.72442  0.10324  3.64370     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     31   3.58965  0.11299  3.63221  2.94165     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     32   3.22866  2.68399  3.27137  0.15765     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     33   3.04057  3.72442  0.10324  3.64370     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     34   0.12511  3.51682  2.89001  3.43172     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     35   0.12511  3.51682  2.89001  3.43172     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     36   3.58965  0.11299  3.63221  2.94165     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     37   3.22866  2.68399  3.27137  0.15765     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     38   3.22866  2.68399  3.27137  0.15765     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     39   0.12511  3.51682  2.89001  3.43172     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     40   0.12511  3.51682  2.89001  3.43172     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     41   3.04057  3.72442  0.10324  3.64370     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     42   3.58965  0.11299  3.63221  2.94165     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     43   0.12511  3.51682  2.89001  3.43172     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     44   3.22866  2.68399  3.27137  0.15765     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03400  4.09144  4.09144  1.46634  0.26236  1.09861  0.40547
     45   0.12511  3.51682  2.89001  3.43172     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01715  4.07458        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:55:54 2012
NSEQ  11
EFFN  3.386475
CKSUM 2691176843
STATS LOCAL MSV       -7.6622  0.71931
STATS LOCAL VITERBI   -7.6860  0.71931
STATS LOCAL FORWARD   -4.0876  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.09796  1.45969  1.60061  1.45943
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  0.00000        *
      1   1.46370  2.19900  2.30983  0.58262      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      2   3.10905  2.60814  3.15643  0.17542      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      3   3.10905  2.60814  3.15643  0.17542      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      4   3.10905  2.60814  3.15643  0.17542      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      5   2.96157  3.60822  0.11494  3.51502      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      6   0.13926  3.40047  2.81503  3.30406      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      7   3.45638  0.12747  3.50485  2.84591      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      8   3.45638  0.12747  3.50485  2.84591      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
      9   3.10905  2.60814  3.15643  0.17542      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     10   3.45638  0.12747  3.50485  2.84591     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     11   0.13926  3.40047  2.81503  3.30406     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     12   2.96157  3.60822  0.11494  3.51502     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     13   0.13926  3.40047  2.81503  3.30406     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     14   3.10905  2.60814  3.15643  0.17542     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     15   3.10905  2.60814  3.15643  0.17542     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     16   0.13926  3.40047  2.81503  3.30406     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     17   2.96157  3.60822  0.11494  3.51502     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     18   0.13926  3.40047  2.81503  3.30406     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     19   3.45638  0.12747  3.50485  2.84591     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     20   2.96157  3.60822  0.11494  3.51502     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     21   0.13926  3.40047  2.81503  3.30406     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     22   2.96157  3.60822  0.11494  3.51502     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     23   0.13926  3.40047  2.81503  3.30406     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     24   0.13926  3.40047  2.81503  3.30406     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     25   0.13926  3.40047  2.81503  3.30406     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     26   0.13926  3.40047  2.81503  3.30406     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     27   3.45638  0.12747  3.50485  2.84591     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     28   3.45638  0.12747  3.50485  2.84591     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     29   3.45638  0.12747  3.50485  2.84591     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     30   2.96157  3.60822  0.11494  3.51502     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     31   3.45638  0.12747  3.50485  2.84591     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     32   3.45638  0.12747  3.50485  2.84591     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     33   2.96157  3.60822  0.11494  3.51502     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     34   0.13926  3.40047  2.81503  3.30406     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     35   0.13926  3.40047  2.81503  3.30406     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     36   3.10905  2.60814  3.15643  0.17542     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     37   3.10905  2.60814  3.15643  0.17542     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     38   3.10905  2.60814  3.15643  0.17542     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     39   0.13926  3.40047  2.81503  3.30406     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     40   0.13926  3.40047  2.81503  3.30406     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     41   2.96157  3.60822  0.11494  3.51502     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     42   3.45638  0.12747  3.50485  2.84591     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     43   0.13926  3.40047  2.81503  3.30406     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     44   3.10905  2.60814  3.15643  0.17542     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02293  4.02293  1.46634  0.26236  1.09861  0.40547
     45   0.13926  3.40047  2.81503  3.30406     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01839  4.00487        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_seventeen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:59:03 2012
NSEQ  3
EFFN  3.000000
CKSUM 1512331715
STATS LOCAL MSV       -8.1035  0.72050
STATS LOCAL VITERBI   -7.6844  0.72050
STATS LOCAL FORWARD   -3.8942  0.72050
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22117  1.29747  1.43994  1.63500
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.86982  3.47591  0.13017  3.36931      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.43223  0.62271  2.50508  1.22417     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixa_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:30 2012
NSEQ  18
EFFN  3.563965
CKSUM 135894155
STATS LOCAL MSV       -7.5770  0.71933
STATS LOCAL VITERBI   -7.7641  0.71933
STATS LOCAL FORWARD   -4.1313  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24017  1.30645  1.59844  1.43686
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  0.00000        *
      1   3.16417  2.64312  3.20941  0.16696      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      2   3.16417  2.64312  3.20941  0.16696      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      3   3.16417  2.64312  3.20941  0.16696      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      4   3.51842  0.12048  3.56419  2.89070      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      5   2.99862  3.66252  0.10930  3.57508      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      6   0.13247  3.45449  2.84993  3.36328      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      7   3.51842  0.12048  3.56419  2.89070      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      8   3.51842  0.12048  3.56419  2.89070      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
      9   3.16417  2.64312  3.20941  0.16696      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     10   2.99862  3.66252  0.10930  3.57508     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     11   0.13247  3.45449  2.84993  3.36328     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     12   0.13247  3.45449  2.84993  3.36328     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     13   3.06631  0.23765  3.12667  2.11143     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     14   3.16417  2.64312  3.20941  0.16696     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     15   3.51842  0.12048  3.56419  2.89070     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     16   0.13247  3.45449  2.84993  3.36328     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     17   2.99862  3.66252  0.10930  3.57508     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     18   0.13247  3.45449  2.84993  3.36328     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     19   3.51842  0.12048  3.56419  2.89070     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     20   2.99862  3.66252  0.10930  3.57508     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     21   3.16417  2.64312  3.20941  0.16696     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     22   2.99862  3.66252  0.10930  3.57508     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     23   0.13247  3.45449  2.84993  3.36328     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     24   0.66567  2.24869  1.69048  1.62913     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     25   2.50555  1.22857  2.57478  0.59877     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     26   0.13247  3.45449  2.84993  3.36328     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     27   3.51842  0.12048  3.56419  2.89070     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     28   3.51842  0.12048  3.56419  2.89070     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     29   3.51842  0.12048  3.56419  2.89070     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     30   2.99862  3.66252  0.10930  3.57508     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     31   3.51842  0.12048  3.56419  2.89070     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     32   3.16417  2.64312  3.20941  0.16696     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     33   2.99862  3.66252  0.10930  3.57508     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     34   0.13247  3.45449  2.84993  3.36328     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     35   0.13247  3.45449  2.84993  3.36328     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     36   3.51842  0.12048  3.56419  2.89070     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     37   3.16417  2.64312  3.20941  0.16696     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     38   3.16417  2.64312  3.20941  0.16696     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     39   0.13247  3.45449  2.84993  3.36328     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     40   0.13247  3.45449  2.84993  3.36328     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     41   2.99862  3.66252  0.10930  3.57508     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     42   3.51842  0.12048  3.56419  2.89070     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     43   0.13247  3.45449  2.84993  3.36328     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     44   3.16417  2.64312  3.20941  0.16696     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03531  4.05421  4.05421  1.46634  0.26236  1.09861  0.40547
     45   0.13247  3.45449  2.84993  3.36328     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01781  4.03671        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:37 2012
NSEQ  4
EFFN  3.363281
CKSUM 3601354860
STATS LOCAL MSV       -8.0016  0.71931
STATS LOCAL VITERBI   -7.7630  0.71931
STATS LOCAL FORWARD   -4.1610  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27366  1.29926  1.52617  1.46927
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  0.00000        *
      1   0.14020  3.39317  2.81030  3.29606      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      2   3.10166  2.60344  3.14932  0.17659      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      3   2.41261  0.95620  2.48463  0.81484      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      4   3.44798  0.12845  3.49681  2.83981      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      5   2.95651  3.60084  0.11574  3.50687      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      6   0.14020  3.39317  2.81030  3.29606      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      7   3.44798  0.12845  3.49681  2.83981      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      8   3.44798  0.12845  3.49681  2.83981      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
      9   3.10166  2.60344  3.14932  0.17659      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     10   2.95651  3.60084  0.11574  3.50687     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     11   0.14020  3.39317  2.81030  3.29606     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     12   0.14020  3.39317  2.81030  3.29606     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     13   3.44798  0.12845  3.49681  2.83981     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     14   3.10166  2.60344  3.14932  0.17659     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     15   3.44798  0.12845  3.49681  2.83981     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     16   0.14020  3.39317  2.81030  3.29606     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     17   2.95651  3.60084  0.11574  3.50687     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     18   0.14020  3.39317  2.81030  3.29606     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     19   3.44798  0.12845  3.49681  2.83981     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     20   2.95651  3.60084  0.11574  3.50687     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     21   3.10166  2.60344  3.14932  0.17659     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     22   2.95651  3.60084  0.11574  3.50687     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     23   2.95651  3.60084  0.11574  3.50687     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     24   3.10166  2.60344  3.14932  0.17659     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     25   3.10166  2.60344  3.14932  0.17659     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     26   0.14020  3.39317  2.81030  3.29606     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     27   3.44798  0.12845  3.49681  2.83981     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     28   3.44798  0.12845  3.49681  2.83981     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     29   3.44798  0.12845  3.49681  2.83981     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     30   2.95651  3.60084  0.11574  3.50687     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     31   3.44798  0.12845  3.49681  2.83981     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     32   3.10166  2.60344  3.14932  0.17659     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     33   2.95651  3.60084  0.11574  3.50687     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     34   0.14020  3.39317  2.81030  3.29606     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     35   0.14020  3.39317  2.81030  3.29606     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     36   3.44798  0.12845  3.49681  2.83981     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     37   3.10166  2.60344  3.14932  0.17659     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     38   3.10166  2.60344  3.14932  0.17659     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     39   0.14020  3.39317  2.81030  3.29606     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     40   0.14020  3.39317  2.81030  3.29606     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     41   2.95651  3.60084  0.11574  3.50687     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     42   3.44798  0.12845  3.49681  2.83981     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     43   0.14020  3.39317  2.81030  3.29606     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     44   3.10166  2.60344  3.14932  0.17659     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03661  4.01877  4.01877  1.46634  0.26236  1.09861  0.40547
     45   0.14020  3.39317  2.81030  3.29606     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01847  4.00063        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:52 2012
NSEQ  7
EFFN  3.359863
CKSUM 2609358306
STATS LOCAL MSV       -8.0369  0.71932
STATS LOCAL VITERBI   -7.7132  0.71932
STATS LOCAL FORWARD   -4.2915  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27593  1.29455  1.52632  1.47197
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  0.00000        *
      1   3.10057  2.60274  3.14826  0.17676      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      2   3.10057  2.60274  3.14826  0.17676      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      3   3.10057  2.60274  3.14826  0.17676      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      4   3.44674  0.12859  3.49562  2.83891      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      5   2.95576  3.59975  0.11586  3.50566      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      6   0.14034  3.39209  2.80960  3.29488      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      7   3.44674  0.12859  3.49562  2.83891      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      8   3.44674  0.12859  3.49562  2.83891      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
      9   3.10057  2.60274  3.14826  0.17676      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     10   2.95576  3.59975  0.11586  3.50566     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     11   0.14034  3.39209  2.80960  3.29488     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     12   0.14034  3.39209  2.80960  3.29488     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     13   3.44674  0.12859  3.49562  2.83891     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     14   3.10057  2.60274  3.14826  0.17676     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     15   3.44674  0.12859  3.49562  2.83891     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     16   0.14034  3.39209  2.80960  3.29488     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     17   0.14034  3.39209  2.80960  3.29488     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     18   2.95576  3.59975  0.11586  3.50566     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     19   3.44674  0.12859  3.49562  2.83891     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     20   2.95576  3.59975  0.11586  3.50566     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     21   3.10057  2.60274  3.14826  0.17676     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     22   2.95576  3.59975  0.11586  3.50566     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     23   0.14034  3.39209  2.80960  3.29488     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     24   2.95576  3.59975  0.11586  3.50566     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     25   2.42382  0.79725  2.49629  0.97165     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     26   0.14034  3.39209  2.80960  3.29488     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     27   3.44674  0.12859  3.49562  2.83891     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     28   3.44674  0.12859  3.49562  2.83891     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     29   3.44674  0.12859  3.49562  2.83891     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     30   2.95576  3.59975  0.11586  3.50566     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     31   3.44674  0.12859  3.49562  2.83891     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     32   3.10057  2.60274  3.14826  0.17676     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     33   2.95576  3.59975  0.11586  3.50566     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     34   0.14034  3.39209  2.80960  3.29488     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     35   0.14034  3.39209  2.80960  3.29488     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     36   3.44674  0.12859  3.49562  2.83891     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     37   3.10057  2.60274  3.14826  0.17676     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     38   3.10057  2.60274  3.14826  0.17676     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     39   0.14034  3.39209  2.80960  3.29488     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     40   0.14034  3.39209  2.80960  3.29488     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     41   2.95576  3.59975  0.11586  3.50566     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     42   3.44674  0.12859  3.49562  2.83891     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     43   0.14034  3.39209  2.80960  3.29488     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     44   3.10057  2.60274  3.14826  0.17676     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03664  4.01816  4.01816  1.46634  0.26236  1.09861  0.40547
     45   0.14034  3.39209  2.80960  3.29488     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01849  4.00001        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixd_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:54:59 2012
NSEQ  4
EFFN  3.339844
CKSUM 231546967
STATS LOCAL MSV       -8.0309  0.71933
STATS LOCAL VITERBI   -7.7157  0.71933
STATS LOCAL FORWARD   -4.0543  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23306  1.38825  1.51451  1.43057
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  0.00000        *
      1   3.09414  2.59866  3.14209  0.17779      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      2   3.09414  2.59866  3.14209  0.17779      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      3   3.09414  2.59866  3.14209  0.17779      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      4   3.43942  0.12946  3.48861  2.83359      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      5   2.95135  3.59331  0.11655  3.49856      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      6   0.14117  3.38574  2.80548  3.28793      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      7   3.43942  0.12946  3.48861  2.83359      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      8   3.43942  0.12946  3.48861  2.83359      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
      9   3.09414  2.59866  3.14209  0.17779      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     10   2.95135  3.59331  0.11655  3.49856     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     11   0.14117  3.38574  2.80548  3.28793     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     12   2.95135  3.59331  0.11655  3.49856     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     13   3.43942  0.12946  3.48861  2.83359     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     14   3.09414  2.59866  3.14209  0.17779     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     15   0.14117  3.38574  2.80548  3.28793     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     16   0.14117  3.38574  2.80548  3.28793     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     17   0.14117  3.38574  2.80548  3.28793     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     18   2.95135  3.59331  0.11655  3.49856     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     19   3.43942  0.12946  3.48861  2.83359     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     20   2.95135  3.59331  0.11655  3.49856     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     21   3.09414  2.59866  3.14209  0.17779     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     22   2.95135  3.59331  0.11655  3.49856     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     23   0.14117  3.38574  2.80548  3.28793     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     24   0.39569  2.76637  1.65002  2.63317     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     25   3.09414  2.59866  3.14209  0.17779     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     26   0.14117  3.38574  2.80548  3.28793     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     27   3.43942  0.12946  3.48861  2.83359     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     28   3.43942  0.12946  3.48861  2.83359     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     29   3.43942  0.12946  3.48861  2.83359     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     30   2.95135  3.59331  0.11655  3.49856     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     31   3.43942  0.12946  3.48861  2.83359     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     32   3.09414  2.59866  3.14209  0.17779     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     33   2.95135  3.59331  0.11655  3.49856     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     34   0.14117  3.38574  2.80548  3.28793     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     35   0.14117  3.38574  2.80548  3.28793     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     36   3.43942  0.12946  3.48861  2.83359     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     37   3.09414  2.59866  3.14209  0.17779     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     38   3.09414  2.59866  3.14209  0.17779     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     39   0.14117  3.38574  2.80548  3.28793     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     40   0.14117  3.38574  2.80548  3.28793     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     41   2.95135  3.59331  0.11655  3.49856     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     42   3.43942  0.12946  3.48861  2.83359     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     43   0.14117  3.38574  2.80548  3.28793     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     44   3.09414  2.59866  3.14209  0.17779     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03677  4.01455  4.01455  1.46634  0.26236  1.09861  0.40547
     45   0.14117  3.38574  2.80548  3.28793     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01855  3.99634        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixe_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:55:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 1628112068
STATS LOCAL MSV       -7.5032  0.72841
STATS LOCAL VITERBI   -8.3390  0.72841
STATS LOCAL FORWARD   -3.4341  0.72841
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28858  1.32680  1.43161  1.51373
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.15554  1.00938  2.23102  0.88601     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:55:09 2012
NSEQ  2
EFFN  2.000000
CKSUM 3055619897
STATS LOCAL MSV       -7.4441  0.72810
STATS LOCAL VITERBI   -8.2961  0.72810
STATS LOCAL FORWARD   -3.6529  0.72810
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24155  1.29109  1.56843  1.47965
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.81865  0.23582  2.88868  2.35662     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:55:16 2012
NSEQ  7
EFFN  3.407715
CKSUM 1378068430
STATS LOCAL MSV       -7.5717  0.71933
STATS LOCAL VITERBI   -7.7982  0.71933
STATS LOCAL FORWARD   -4.1398  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27368  1.31689  1.57646  1.40435
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  0.00000        *
      1   3.11579  2.61241  3.16290  0.17436      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      2   3.11579  2.61241  3.16290  0.17436      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      3   3.11579  2.61241  3.16290  0.17436      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      4   3.11579  2.61241  3.16290  0.17436      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      5   2.96616  3.61492  0.11423  3.52243      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      6   0.13840  3.40710  2.81933  3.31132      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      7   3.46401  0.12658  3.51215  2.85144      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      8   3.46401  0.12658  3.51215  2.85144      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
      9   3.11579  2.61241  3.16290  0.17436      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     10   2.96616  3.61492  0.11423  3.52243     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     11   0.13840  3.40710  2.81933  3.31132     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     12   0.13840  3.40710  2.81933  3.31132     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     13   3.46401  0.12658  3.51215  2.85144     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     14   3.11579  2.61241  3.16290  0.17436     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     15   3.46401  0.12658  3.51215  2.85144     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     16   0.13840  3.40710  2.81933  3.31132     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     17   2.96616  3.61492  0.11423  3.52243     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     18   3.11579  2.61241  3.16290  0.17436     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     19   3.46401  0.12658  3.51215  2.85144     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     20   2.96616  3.61492  0.11423  3.52243     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     21   0.13840  3.40710  2.81933  3.31132     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     22   2.96616  3.61492  0.11423  3.52243     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     23   0.13840  3.40710  2.81933  3.31132     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     24   2.10784  2.18574  0.86149  1.06835     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     25   3.46401  0.12658  3.51215  2.85144     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     26   0.13840  3.40710  2.81933  3.31132     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     27   3.46401  0.12658  3.51215  2.85144     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     28   3.46401  0.12658  3.51215  2.85144     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     29   3.46401  0.12658  3.51215  2.85144     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     30   2.96616  3.61492  0.11423  3.52243     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     31   3.46401  0.12658  3.51215  2.85144     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     32   3.11579  2.61241  3.16290  0.17436     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     33   2.96616  3.61492  0.11423  3.52243     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     34   0.13840  3.40710  2.81933  3.31132     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     35   0.13840  3.40710  2.81933  3.31132     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     36   3.46401  0.12658  3.51215  2.85144     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     37   3.11579  2.61241  3.16290  0.17436     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     38   3.11579  2.61241  3.16290  0.17436     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     39   0.13840  3.40710  2.81933  3.31132     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     40   0.13840  3.40710  2.81933  3.31132     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     41   2.96616  3.61492  0.11423  3.52243     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     42   3.46401  0.12658  3.51215  2.85144     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     43   0.13840  3.40710  2.81933  3.31132     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     44   3.11579  2.61241  3.16290  0.17436     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03632  4.02673  4.02673  1.46634  0.26236  1.09861  0.40547
     45   0.13840  3.40710  2.81933  3.31132     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00874        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_sixteen_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:50 2012
NSEQ  3
EFFN  3.000000
CKSUM 2702931191
STATS LOCAL MSV       -8.1252  0.72211
STATS LOCAL VITERBI   -7.8013  0.72211
STATS LOCAL FORWARD   -4.0275  0.72211
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27401  1.27647  1.47321  1.55077
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.56013  2.54906  1.34493  2.40626     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   1.31182  2.57335  0.56876  2.42854     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.08990  1.41165  0.68330  2.05875     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.09644  0.73721  1.35192  1.96671     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:57:08 2012
NSEQ  20
EFFN  3.813477
CKSUM 482766231
STATS LOCAL MSV       -7.0524  0.71931
STATS LOCAL VITERBI   -7.7040  0.71931
STATS LOCAL FORWARD   -4.3542  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29024  1.29052  1.51005  1.47504
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  0.00000        *
      1   0.86422  2.22193  2.22033  1.01708      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      2   3.23747  2.68958  3.27984  0.15643      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      3   3.04620  3.73275  0.10245  3.65294      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      4   3.59927  0.11202  3.64140  2.94850      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      5   0.12415  3.52528  2.89544  3.44100      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      6   0.12415  3.52528  2.89544  3.44100      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      7   3.59927  0.11202  3.64140  2.94850      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      8   3.59927  0.11202  3.64140  2.94850      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
      9   3.23747  2.68958  3.27984  0.15643      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     10   3.04620  3.73275  0.10245  3.65294     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     11   0.12415  3.52528  2.89544  3.44100     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     12   1.69592  2.94764  0.35053  2.81692     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     13   3.59927  0.11202  3.64140  2.94850     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     14   3.23747  2.68958  3.27984  0.15643     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     15   3.59927  0.11202  3.64140  2.94850     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     16   0.12415  3.52528  2.89544  3.44100     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     17   3.04620  3.73275  0.10245  3.65294     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     18   2.15720  2.22527  0.88333  1.01360     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     19   3.59927  0.11202  3.64140  2.94850     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     20   3.04620  3.73275  0.10245  3.65294     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     21   3.23747  2.68958  3.27984  0.15643     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     22   3.04620  3.73275  0.10245  3.65294     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     23   0.12415  3.52528  2.89544  3.44100     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     24   2.88047  1.89372  2.93767  0.30057     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     25   3.23747  2.68958  3.27984  0.15643     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     26   0.12415  3.52528  2.89544  3.44100     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     27   3.59927  0.11202  3.64140  2.94850     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     28   3.59927  0.11202  3.64140  2.94850     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     29   3.59927  0.11202  3.64140  2.94850     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     30   3.04620  3.73275  0.10245  3.65294     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     31   3.59927  0.11202  3.64140  2.94850     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     32   2.64594  1.44143  2.71139  0.46836     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     33   3.04620  3.73275  0.10245  3.65294     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     34   0.12415  3.52528  2.89544  3.44100     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     35   0.12415  3.52528  2.89544  3.44100     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     36   3.59927  0.11202  3.64140  2.94850     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     37   3.23747  2.68958  3.27984  0.15643     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     38   3.23747  2.68958  3.27984  0.15643     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     39   0.12415  3.52528  2.89544  3.44100     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     40   0.12415  3.52528  2.89544  3.44100     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     41   3.04620  3.73275  0.10245  3.65294     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     42   3.59927  0.11202  3.64140  2.94850     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     43   0.12415  3.52528  2.89544  3.44100     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     44   3.23747  2.68958  3.27984  0.15643     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03382  4.09659  4.09659  1.46634  0.26236  1.09861  0.40547
     45   0.12415  3.52528  2.89544  3.44100     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01706  4.07982        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirteena_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:57:46 2012
NSEQ  2
EFFN  2.000000
CKSUM 99869061
STATS LOCAL MSV       -7.4759  0.72777
STATS LOCAL VITERBI   -8.1308  0.72777
STATS LOCAL FORWARD   -3.5939  0.72777
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29537  1.19288  1.50367  1.60672
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.53331  3.02441  0.20344  2.88069     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirteenb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:57:54 2012
NSEQ  2
EFFN  2.000000
CKSUM 3873050328
STATS LOCAL MSV       -7.5297  0.72801
STATS LOCAL VITERBI   -8.2100  0.72801
STATS LOCAL FORWARD   -3.3773  0.72801
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29291  1.29179  1.49882  1.48124
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirteenc_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:02 2012
NSEQ  3
EFFN  3.000000
CKSUM 2768605859
STATS LOCAL MSV       -8.0306  0.72026
STATS LOCAL VITERBI   -7.8201  0.72026
STATS LOCAL FORWARD   -4.1363  0.72026
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28277  1.26352  1.52493  1.50310
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirteene_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:15 2012
NSEQ  4
EFFN  3.332031
CKSUM 3888805481
STATS LOCAL MSV       -8.0259  0.71933
STATS LOCAL VITERBI   -7.5825  0.71933
STATS LOCAL FORWARD   -3.7267  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.12169  1.25795  1.51072  1.77619
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  0.00000        *
      1   3.43655  0.12980  3.48587  2.83150      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      2   0.14150  3.38325  2.80387  3.28520      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      3   0.14150  3.38325  2.80387  3.28520      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      4   3.43655  0.12980  3.48587  2.83150      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      5   2.94961  3.59079  0.11683  3.49577      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      6   0.14150  3.38325  2.80387  3.28520      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      7   3.43655  0.12980  3.48587  2.83150      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      8   3.43655  0.12980  3.48587  2.83150      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
      9   3.09163  2.59706  3.13967  0.17819      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     10   3.43655  0.12980  3.48587  2.83150     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     11   0.14150  3.38325  2.80387  3.28520     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     12   2.94961  3.59079  0.11683  3.49577     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     13   0.14150  3.38325  2.80387  3.28520     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     14   2.94961  3.59079  0.11683  3.49577     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     15   3.43655  0.12980  3.48587  2.83150     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     16   0.14150  3.38325  2.80387  3.28520     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     17   2.94961  3.59079  0.11683  3.49577     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     18   2.94961  3.59079  0.11683  3.49577     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     19   3.43655  0.12980  3.48587  2.83150     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     20   2.94961  3.59079  0.11683  3.49577     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     21   0.14150  3.38325  2.80387  3.28520     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     22   2.94961  3.59079  0.11683  3.49577     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     23   0.14150  3.38325  2.80387  3.28520     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     24   3.43655  0.12980  3.48587  2.83150     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     25   3.09163  2.59706  3.13967  0.17819     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     26   0.14150  3.38325  2.80387  3.28520     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     27   3.43655  0.12980  3.48587  2.83150     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     28   3.43655  0.12980  3.48587  2.83150     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     29   3.43655  0.12980  3.48587  2.83150     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     30   0.40370  2.75421  1.63104  2.62041     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     31   3.43655  0.12980  3.48587  2.83150     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     32   3.09163  2.59706  3.13967  0.17819     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     33   2.94961  3.59079  0.11683  3.49577     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     34   0.14150  3.38325  2.80387  3.28520     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     35   0.14150  3.38325  2.80387  3.28520     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     36   2.59252  1.55117  2.65827  0.44146     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     37   3.09163  2.59706  3.13967  0.17819     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     38   3.09163  2.59706  3.13967  0.17819     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     39   0.14150  3.38325  2.80387  3.28520     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     40   0.14150  3.38325  2.80387  3.28520     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     41   2.94961  3.59079  0.11683  3.49577     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     42   3.43655  0.12980  3.48587  2.83150     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     43   0.14150  3.38325  2.80387  3.28520     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     44   3.09163  2.59706  3.13967  0.17819     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03682  4.01314  4.01314  1.46634  0.26236  1.09861  0.40547
     45   0.14150  3.38325  2.80387  3.28520     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01858  3.99490        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirteenf_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:58:22 2012
NSEQ  30
EFFN  3.314209
CKSUM 3930340295
STATS LOCAL MSV       -8.2137  0.71933
STATS LOCAL VITERBI   -7.6701  0.71933
STATS LOCAL FORWARD   -4.2107  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21644  1.32636  1.53322  1.50310
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  0.00000        *
      1   0.14225  3.37755  2.80016  3.27895      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      2   3.08587  2.59340  3.13413  0.17912      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      3   3.42998  0.13058  3.47957  2.82672      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      4   3.42998  0.13058  3.47957  2.82672      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      5   2.94563  3.58500  0.11746  3.48938      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      6   0.14225  3.37755  2.80016  3.27895      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      7   3.42998  0.13058  3.47957  2.82672      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      8   3.42998  0.13058  3.47957  2.82672      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
      9   3.08587  2.59340  3.13413  0.17912      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     10   3.42998  0.13058  3.47957  2.82672     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     11   0.14225  3.37755  2.80016  3.27895     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     12   2.94563  3.58500  0.11746  3.48938     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     13   0.14225  3.37755  2.80016  3.27895     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     14   3.08587  2.59340  3.13413  0.17912     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     15   3.42998  0.13058  3.47957  2.82672     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     16   2.94563  3.58500  0.11746  3.48938     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     17   2.66390  2.61000  0.21952  2.92094     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     18   0.14225  3.37755  2.80016  3.27895     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     19   3.42998  0.13058  3.47957  2.82672     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     20   2.94563  3.58500  0.11746  3.48938     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     21   0.14225  3.37755  2.80016  3.27895     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     22   2.94563  3.58500  0.11746  3.48938     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     23   0.14225  3.37755  2.80016  3.27895     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     24   3.08587  2.59340  3.13413  0.17912     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     25   3.08587  2.59340  3.13413  0.17912     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     26   0.14225  3.37755  2.80016  3.27895     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     27   3.42998  0.13058  3.47957  2.82672     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     28   3.07458  0.19377  2.84308  2.63525     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     29   3.42998  0.13058  3.47957  2.82672     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     30   2.94563  3.58500  0.11746  3.48938     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     31   3.42998  0.13058  3.47957  2.82672     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     32   3.08587  2.59340  3.13413  0.17912     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     33   2.94563  3.58500  0.11746  3.48938     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     34   0.14225  3.37755  2.80016  3.27895     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     35   0.14225  3.37755  2.80016  3.27895     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     36   3.08587  2.59340  3.13413  0.17912     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     37   3.08587  2.59340  3.13413  0.17912     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     38   3.08587  2.59340  3.13413  0.17912     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     39   0.14225  3.37755  2.80016  3.27895     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     40   0.14225  3.37755  2.80016  3.27895     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     41   2.94563  3.58500  0.11746  3.48938     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     42   3.42998  0.13058  3.47957  2.82672     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     43   0.14225  3.37755  2.80016  3.27895     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     44   3.08587  2.59340  3.13413  0.17912     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03694  4.00991  4.00991  1.46634  0.26236  1.09861  0.40547
     45   0.14225  3.37755  2.80016  3.27895     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01864  3.99161        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:15 2012
NSEQ  4
EFFN  3.660156
CKSUM 172308360
STATS LOCAL MSV       -7.5788  0.71932
STATS LOCAL VITERBI   -7.7425  0.71932
STATS LOCAL FORWARD   -4.2739  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28564  1.28833  1.51910  1.47453
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  0.00000        *
      1   3.19300  2.66139  3.23711  0.16273      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      2   3.19300  2.66139  3.23711  0.16273      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      3   3.19300  2.66139  3.23711  0.16273      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      4   2.46500  0.94717  2.53631  0.80297      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      5   3.01755  3.69041  0.10652  3.60597      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      6   0.12911  3.48247  2.86794  3.39398      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      7   3.55045  0.11705  3.59478  2.91367      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      8   3.55045  0.11705  3.59478  2.91367      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
      9   3.19300  2.66139  3.23711  0.16273      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     10   3.01755  3.69041  0.10652  3.60597     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     11   0.12911  3.48247  2.86794  3.39398     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     12   0.12911  3.48247  2.86794  3.39398     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     13   3.55045  0.11705  3.59478  2.91367     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     14   3.19300  2.66139  3.23711  0.16273     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     15   3.55045  0.11705  3.59478  2.91367     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     16   0.12911  3.48247  2.86794  3.39398     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     17   3.01755  3.69041  0.10652  3.60597     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     18   0.96244  2.18570  2.20249  0.92858     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     19   3.55045  0.11705  3.59478  2.91367     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     20   3.01755  3.69041  0.10652  3.60597     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     21   0.96244  2.18570  2.20249  0.92858     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     22   3.01755  3.69041  0.10652  3.60597     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     23   0.12911  3.48247  2.86794  3.39398     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     24   3.01755  3.69041  0.10652  3.60597     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     25   3.55045  0.11705  3.59478  2.91367     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     26   0.12911  3.48247  2.86794  3.39398     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     27   3.55045  0.11705  3.59478  2.91367     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     28   3.55045  0.11705  3.59478  2.91367     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     29   3.55045  0.11705  3.59478  2.91367     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     30   3.01755  3.69041  0.10652  3.60597     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     31   3.55045  0.11705  3.59478  2.91367     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     32   3.19300  2.66139  3.23711  0.16273     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     33   3.01755  3.69041  0.10652  3.60597     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     34   0.12911  3.48247  2.86794  3.39398     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     35   0.12911  3.48247  2.86794  3.39398     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     36   3.55045  0.11705  3.59478  2.91367     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     37   3.19300  2.66139  3.23711  0.16273     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     38   3.19300  2.66139  3.23711  0.16273     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     39   0.12911  3.48247  2.86794  3.39398     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     40   0.12911  3.48247  2.86794  3.39398     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     41   3.01755  3.69041  0.10652  3.60597     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     42   3.55045  0.11705  3.59478  2.91367     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     43   0.12911  3.48247  2.86794  3.39398     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     44   3.19300  2.66139  3.23711  0.16273     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03472  4.07076  4.07076  1.46634  0.26236  1.09861  0.40547
     45   0.12911  3.48247  2.86794  3.39398     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01751  4.05355        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyfivea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:36:29 2012
NSEQ  2
EFFN  2.000000
CKSUM 2251262723
STATS LOCAL MSV       -7.6478  0.72857
STATS LOCAL VITERBI   -8.3386  0.72857
STATS LOCAL FORWARD   -3.4900  0.72857
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22063  1.28733  1.53896  1.54017
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.92825  2.28391  0.95698  2.13014     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyfiveb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:36:36 2012
NSEQ  4
EFFN  3.324219
CKSUM 223359380
STATS LOCAL MSV       -8.2434  0.71932
STATS LOCAL VITERBI   -7.8397  0.71932
STATS LOCAL FORWARD   -4.0517  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15527  1.22784  1.60527  1.65408
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  0.00000        *
      1   1.57609  0.55050  2.35295  2.10809      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      2   3.08911  2.59546  3.13724  0.17860      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      3   3.43368  0.13014  3.48311  2.82941      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      4   3.43368  0.13014  3.48311  2.82941      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      5   2.94787  3.58826  0.11710  3.49298      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      6   0.14183  3.38076  2.80224  3.28247      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      7   3.43368  0.13014  3.48311  2.82941      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      8   3.43368  0.13014  3.48311  2.82941      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
      9   3.08911  2.59546  3.13724  0.17860      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     10   2.94787  3.58826  0.11710  3.49298     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     11   0.14183  3.38076  2.80224  3.28247     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     12   2.94787  3.58826  0.11710  3.49298     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     13   0.14183  3.38076  2.80224  3.28247     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     14   3.08911  2.59546  3.13724  0.17860     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     15   3.43368  0.13014  3.48311  2.82941     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     16   0.14183  3.38076  2.80224  3.28247     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     17   2.94787  3.58826  0.11710  3.49298     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     18   0.14183  3.38076  2.80224  3.28247     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     19   3.43368  0.13014  3.48311  2.82941     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     20   2.94787  3.58826  0.11710  3.49298     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     21   0.14183  3.38076  2.80224  3.28247     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     22   2.94787  3.58826  0.11710  3.49298     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     23   0.14183  3.38076  2.80224  3.28247     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     24   3.43368  0.13014  3.48311  2.82941     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     25   0.14183  3.38076  2.80224  3.28247     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     26   0.14183  3.38076  2.80224  3.28247     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     27   3.43368  0.13014  3.48311  2.82941     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     28   3.43368  0.13014  3.48311  2.82941     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     29   3.43368  0.13014  3.48311  2.82941     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     30   3.43368  0.13014  3.48311  2.82941     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     31   3.43368  0.13014  3.48311  2.82941     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     32   3.08911  2.59546  3.13724  0.17860     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     33   2.94787  3.58826  0.11710  3.49298     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     34   0.14183  3.38076  2.80224  3.28247     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     35   0.14183  3.38076  2.80224  3.28247     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     36   3.08911  2.59546  3.13724  0.17860     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     37   3.08911  2.59546  3.13724  0.17860     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     38   3.08911  2.59546  3.13724  0.17860     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     39   0.14183  3.38076  2.80224  3.28247     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     40   0.14183  3.38076  2.80224  3.28247     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     41   2.94787  3.58826  0.11710  3.49298     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     42   3.43368  0.13014  3.48311  2.82941     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     43   0.14183  3.38076  2.80224  3.28247     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     44   3.08911  2.59546  3.13724  0.17860     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03688  4.01173  4.01173  1.46634  0.26236  1.09861  0.40547
     45   0.14183  3.38076  2.80224  3.28247     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01861  3.99346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyfivec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:36:40 2012
NSEQ  3
EFFN  3.000000
CKSUM 929202663
STATS LOCAL MSV       -8.0030  0.72088
STATS LOCAL VITERBI   -7.9152  0.72088
STATS LOCAL FORWARD   -4.0145  0.72088
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27679  1.32055  1.55992  1.41088
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.97980  2.52563  3.03204  0.19727     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.10082  2.21882  0.69930  1.30206     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   3.30705  0.14631  3.36166  2.73626     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyone_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:02:10 2012
NSEQ  51
EFFN  4.622498
CKSUM 1752002484
STATS LOCAL MSV       -6.8011  0.71932
STATS LOCAL VITERBI   -7.5797  0.71932
STATS LOCAL FORWARD   -4.2983  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19181  1.51829  1.65331  1.25236
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  0.00000        *
      1   0.19872  3.21993  2.80686  2.52735      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      2   0.10412  3.71958  3.02068  3.65469      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      3   0.52708  2.23372  2.35113  1.57367      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      4   3.34764  0.19756  3.40023  2.20060      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      5   2.62740  0.91749  2.69659  0.77484      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      6   0.10412  3.71958  3.02068  3.65469      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      7   3.81741  0.09236  3.84929  3.10236      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      8   3.81741  0.09236  3.84929  3.10236      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
      9   3.44540  2.82224  3.47956  0.13032      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     10   3.17260  3.92002  0.08641  3.86101     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     11   0.10412  3.71958  3.02068  3.65469     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     12   1.58081  3.03038  0.36961  2.90245     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     13   3.44540  2.82224  3.47956  0.13032     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     14   3.25099  2.29289  3.29505  0.19453     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     15   1.37291  2.90286  0.46354  2.76925     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     16   1.81501  0.76028  1.42571  2.04569     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     17   2.95426  3.45935  0.15725  2.78152     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     18   3.44540  2.82224  3.47956  0.13032     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     19   0.13688  3.59251  2.64970  3.51592     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     20   3.44540  2.82224  3.47956  0.13032     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     21   3.17260  3.92002  0.08641  3.86101     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     22   0.10412  3.71958  3.02068  3.65469     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     23   3.11442  1.99982  3.16489  0.25101     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     24   3.26990  2.33740  3.31303  0.18753     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     25   0.10412  3.71958  3.02068  3.65469     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     26   3.81741  0.09236  3.84929  3.10236     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     27   3.81741  0.09236  3.84929  3.10236     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     28   3.44540  2.82224  3.47956  0.13032     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     29   3.17260  3.92002  0.08641  3.86101     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     30   3.81741  0.09236  3.84929  3.10236     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     31   3.03541  1.84690  3.08928  0.28944     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     32   3.17260  3.92002  0.08641  3.86101     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     33   0.10412  3.71958  3.02068  3.65469     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     34   0.10412  3.71958  3.02068  3.65469     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     35   3.81741  0.09236  3.84929  3.10236     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     36   3.44540  2.82224  3.47956  0.13032     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     37   3.44540  2.82224  3.47956  0.13032     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     38   0.10412  3.71958  3.02068  3.65469     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     39   0.10412  3.71958  3.02068  3.65469     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     40   3.17260  3.92002  0.08641  3.86101     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     41   3.81741  0.09236  3.84929  3.10236     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     42   0.10412  3.71958  3.02068  3.65469     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     43   3.44540  2.82224  3.47956  0.13032     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     44   0.10412  3.71958  3.02068  3.65469     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.02975  4.22281  4.22281  1.46634  0.26236  1.09861  0.40547
     45   3.44540  2.82224  3.47956  0.13032     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01499  4.20804        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:37:02 2012
NSEQ  3
EFFN  3.000000
CKSUM 2809097426
STATS LOCAL MSV       -8.0435  0.72039
STATS LOCAL VITERBI   -7.7252  0.72039
STATS LOCAL FORWARD   -4.0959  0.72039
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.40570  1.19945  1.38115  1.59871
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.43088  1.34923  2.50068  0.56112      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:36:51 2012
NSEQ  2
EFFN  2.000000
CKSUM 2235696670
STATS LOCAL MSV       -7.6354  0.72842
STATS LOCAL VITERBI   -8.1785  0.72842
STATS LOCAL FORWARD   -3.4467  0.72842
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23700  1.38378  1.42713  1.51815
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   0.23862  2.84929  2.43386  2.70756     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.15554  1.00938  2.23102  0.88601     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Wed Feb 29 11:36:15 2012
NSEQ  3
EFFN  3.000000
CKSUM 958365841
STATS LOCAL MSV       -7.9809  0.72073
STATS LOCAL VITERBI   -7.8947  0.72073
STATS LOCAL FORWARD   -4.3469  0.72073
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33797  1.26045  1.48365  1.48154
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.10082  2.21882  0.69930  1.30206      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_thirtytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:02:19 2012
NSEQ  21
EFFN  3.776001
CKSUM 3781066606
STATS LOCAL MSV       -7.4789  0.71932
STATS LOCAL VITERBI   -7.7461  0.71932
STATS LOCAL FORWARD   -4.0252  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21030  1.50966  1.52784  1.33217
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  0.00000        *
      1   3.04959  0.25511  3.11054  2.01578      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      2   3.03936  3.72263  0.10341  3.64171      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      3   3.22677  2.68279  3.26956  0.15792      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      4   3.03936  3.72263  0.10341  3.64171      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      5   3.22677  2.68279  3.26956  0.15792      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      6   0.12532  3.51501  2.88885  3.42972      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      7   3.22677  2.68279  3.26956  0.15792      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      8   3.58758  0.11320  3.63024  2.94018      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
      9   3.22677  2.68279  3.26956  0.15792      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     10   3.03936  3.72263  0.10341  3.64171     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     11   0.12532  3.51501  2.88885  3.42972     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     12   0.12532  3.51501  2.88885  3.42972     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     13   0.26222  2.34874  2.60935  2.78736     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.13370  4.09034  2.22184  1.46634  0.26236  1.09861  0.40547
     14   3.05768  2.57545  3.10701  0.18374     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03754  3.99418  3.99418  1.46634  0.26236  0.26904  1.44439
     15   3.58758  0.11320  3.63024  2.94018     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     16   0.12532  3.51501  2.88885  3.42972     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     17   0.12532  3.51501  2.88885  3.42972     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     18   3.03936  3.72263  0.10341  3.64171     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     19   3.22677  2.68279  3.26956  0.15792     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     20   3.03936  3.72263  0.10341  3.64171     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     21   3.22677  2.68279  3.26956  0.15792     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     22   3.03936  3.72263  0.10341  3.64171     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     23   0.19599  3.15137  2.72843  2.66121     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     24   2.05503  1.13744  1.58476  1.06052     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     25   2.03102  2.66968  0.38075  2.15267     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     26   0.12532  3.51501  2.88885  3.42972     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     27   3.58758  0.11320  3.63024  2.94018     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     28   3.58758  0.11320  3.63024  2.94018     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     29   3.58758  0.11320  3.63024  2.94018     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     30   3.58758  0.11320  3.63024  2.94018     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     31   3.58758  0.11320  3.63024  2.94018     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     32   3.22677  2.68279  3.26956  0.15792     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     33   3.03936  3.72263  0.10341  3.64171     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     34   0.12532  3.51501  2.88885  3.42972     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     35   0.12532  3.51501  2.88885  3.42972     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     36   3.22677  2.68279  3.26956  0.15792     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     37   3.22677  2.68279  3.26956  0.15792     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     38   3.22677  2.68279  3.26956  0.15792     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     39   0.12532  3.51501  2.88885  3.42972     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     40   0.12532  3.51501  2.88885  3.42972     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     41   3.03936  3.72263  0.10341  3.64171     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     42   3.58758  0.11320  3.63024  2.94018     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     43   0.12532  3.51501  2.88885  3.42972     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     44   3.22677  2.68279  3.26956  0.15792     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03404  4.09034  4.09034  1.46634  0.26236  1.09861  0.40547
     45   0.12532  3.51501  2.88885  3.42972     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01716  4.07346        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:49:43 2012
NSEQ  10
EFFN  3.334961
CKSUM 2758523613
STATS LOCAL MSV       -8.2143  0.71933
STATS LOCAL VITERBI   -7.5430  0.71933
STATS LOCAL FORWARD   -3.9363  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23872  1.25886  1.59600  1.49807
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  0.00000        *
      1   3.09257  2.59766  3.14057  0.17804      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      2   3.43763  0.12967  3.48690  2.83229      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      3   3.09257  2.59766  3.14057  0.17804      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      4   3.43763  0.12967  3.48690  2.83229      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      5   2.95026  3.59174  0.11672  3.49682      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      6   0.14138  3.38419  2.80447  3.28622      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      7   3.43763  0.12967  3.48690  2.83229      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      8   3.43763  0.12967  3.48690  2.83229      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
      9   3.09257  2.59766  3.14057  0.17804      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     10   3.43763  0.12967  3.48690  2.83229     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     11   0.14138  3.38419  2.80447  3.28622     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     12   2.95026  3.59174  0.11672  3.49682     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     13   0.14138  3.38419  2.80447  3.28622     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     14   3.09257  2.59766  3.14057  0.17804     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     15   3.43763  0.12967  3.48690  2.83229     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     16   0.14138  3.38419  2.80447  3.28622     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     17   2.95026  3.59174  0.11672  3.49682     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     18   0.46629  2.68077  1.48912  2.54345     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     19   3.43763  0.12967  3.48690  2.83229     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     20   0.14138  3.38419  2.80447  3.28622     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     21   0.14138  3.38419  2.80447  3.28622     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     22   2.95026  3.59174  0.11672  3.49682     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     23   2.95026  3.59174  0.11672  3.49682     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     24   3.43763  0.12967  3.48690  2.83229     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     25   3.09257  2.59766  3.14057  0.17804     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     26   0.14138  3.38419  2.80447  3.28622     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     27   3.43763  0.12967  3.48690  2.83229     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     28   3.43763  0.12967  3.48690  2.83229     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     29   3.43763  0.12967  3.48690  2.83229     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     30   2.95026  3.59174  0.11672  3.49682     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     31   3.43763  0.12967  3.48690  2.83229     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     32   3.09257  2.59766  3.14057  0.17804     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     33   2.95026  3.59174  0.11672  3.49682     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     34   0.14138  3.38419  2.80447  3.28622     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     35   0.14138  3.38419  2.80447  3.28622     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     36   3.09257  2.59766  3.14057  0.17804     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     37   3.09257  2.59766  3.14057  0.17804     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     38   3.09257  2.59766  3.14057  0.17804     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     39   0.14138  3.38419  2.80447  3.28622     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     40   0.14138  3.38419  2.80447  3.28622     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     41   2.95026  3.59174  0.11672  3.49682     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     42   3.43763  0.12967  3.48690  2.83229     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     43   0.14138  3.38419  2.80447  3.28622     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     44   3.09257  2.59766  3.14057  0.17804     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03680  4.01367  4.01367  1.46634  0.26236  1.09861  0.40547
     45   0.14138  3.38419  2.80447  3.28622     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01857  3.99544        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twelve_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:57:34 2012
NSEQ  3
EFFN  3.000000
CKSUM 869730097
STATS LOCAL MSV       -8.0534  0.72127
STATS LOCAL VITERBI   -7.7876  0.72127
STATS LOCAL FORWARD   -3.9200  0.72127
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.20477  1.36989  1.62908  1.38632
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   1.33622  2.58417  0.55423  2.43967     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.42752  1.34012  2.49742  0.56628     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.86982  3.47591  0.13017  3.36931     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twenty_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:59:47 2012
NSEQ  10
EFFN  3.637695
CKSUM 2656717971
STATS LOCAL MSV       -7.6590  0.71931
STATS LOCAL VITERBI   -7.6396  0.71931
STATS LOCAL FORWARD   -4.2587  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26274  1.30948  1.45746  1.54022
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  0.00000        *
      1   2.56791  0.56820  2.63886  1.25414      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      2   2.21210  0.29506  2.81793  2.44976      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      3   3.18633  2.65716  3.23071  0.16370      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      4   3.01320  3.68399  0.10715  3.59886      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      5   0.12988  3.47601  2.86379  3.38690      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      6   0.12988  3.47601  2.86379  3.38690      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      7   2.76060  0.38841  2.82828  1.61194      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      8   3.54307  0.11783  3.58773  2.90838      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
      9   3.18633  2.65716  3.23071  0.16370      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     10   3.54307  0.11783  3.58773  2.90838     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     11   0.12988  3.47601  2.86379  3.38690     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     12   3.01320  3.68399  0.10715  3.59886     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     13   0.12988  3.47601  2.86379  3.38690     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     14   3.18633  2.65716  3.23071  0.16370     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     15   3.54307  0.11783  3.58773  2.90838     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     16   0.12988  3.47601  2.86379  3.38690     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     17   3.01320  3.68399  0.10715  3.59886     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     18   3.01320  3.68399  0.10715  3.59886     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     19   3.54307  0.11783  3.58773  2.90838     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     20   3.01320  3.68399  0.10715  3.59886     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     21   1.76831  2.95823  0.33081  2.82808     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     22   3.01320  3.68399  0.10715  3.59886     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     23   0.23339  3.13290  2.15597  3.02062     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     24   3.18633  2.65716  3.23071  0.16370     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     25   3.54307  0.11783  3.58773  2.90838     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     26   0.12988  3.47601  2.86379  3.38690     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     27   3.54307  0.11783  3.58773  2.90838     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     28   3.54307  0.11783  3.58773  2.90838     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     29   3.54307  0.11783  3.58773  2.90838     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     30   3.01320  3.68399  0.10715  3.59886     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     31   3.54307  0.11783  3.58773  2.90838     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     32   3.18633  2.65716  3.23071  0.16370     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     33   3.01320  3.68399  0.10715  3.59886     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     34   0.12988  3.47601  2.86379  3.38690     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     35   0.12988  3.47601  2.86379  3.38690     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     36   3.18633  2.65716  3.23071  0.16370     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     37   3.18633  2.65716  3.23071  0.16370     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     38   3.18633  2.65716  3.23071  0.16370     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     39   0.12988  3.47601  2.86379  3.38690     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     40   0.12988  3.47601  2.86379  3.38690     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     41   3.01320  3.68399  0.10715  3.59886     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     42   3.54307  0.11783  3.58773  2.90838     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     43   0.12988  3.47601  2.86379  3.38690     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     44   3.18633  2.65716  3.23071  0.16370     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03486  4.06692  4.06692  1.46634  0.26236  1.09861  0.40547
     45   0.12988  3.47601  2.86379  3.38690     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01758  4.04964        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyeight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:50 2012
NSEQ  5
EFFN  3.168945
CKSUM 1327797524
STATS LOCAL MSV       -8.0678  0.71932
STATS LOCAL VITERBI   -7.6682  0.71932
STATS LOCAL FORWARD   -3.5455  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.41226  1.10325  1.45485  1.65452
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  0.00000        *
      1   2.91196  3.53626  0.12295  3.43565      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      2   3.03791  2.56284  3.08799  0.18707      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      3   3.37482  0.13738  3.42671  2.78637      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      4   2.91196  3.53626  0.12295  3.43565      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      5   2.91196  3.53626  0.12295  3.43565      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      6   0.14875  3.32976  2.76899  3.22669      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      7   3.37482  0.13738  3.42671  2.78637      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      8   3.37482  0.13738  3.42671  2.78637      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
      9   3.03791  2.56284  3.08799  0.18707      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     10   3.37482  0.13738  3.42671  2.78637     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     11   2.91196  3.53626  0.12295  3.43565     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     12   2.91196  3.53626  0.12295  3.43565     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     13   3.37482  0.13738  3.42671  2.78637     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     14   3.03791  2.56284  3.08799  0.18707     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     15   3.37482  0.13738  3.42671  2.78637     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     16   0.14875  3.32976  2.76899  3.22669     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     17   2.91196  3.53626  0.12295  3.43565     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     18   3.37482  0.13738  3.42671  2.78637     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     19   3.37482  0.13738  3.42671  2.78637     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     20   3.03791  2.56284  3.08799  0.18707     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     21   0.14875  3.32976  2.76899  3.22669     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     22   2.91196  3.53626  0.12295  3.43565     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     23   0.14875  3.32976  2.76899  3.22669     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     24   3.03791  2.56284  3.08799  0.18707     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     25   3.37482  0.13738  3.42671  2.78637     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     26   0.14875  3.32976  2.76899  3.22669     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     27   3.37482  0.13738  3.42671  2.78637     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     28   3.37482  0.13738  3.42671  2.78637     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     29   3.37482  0.13738  3.42671  2.78637     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     30   2.91196  3.53626  0.12295  3.43565     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     31   3.37482  0.13738  3.42671  2.78637     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     32   3.37482  0.13738  3.42671  2.78637     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     33   2.91196  3.53626  0.12295  3.43565     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     34   0.14875  3.32976  2.76899  3.22669     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     35   0.14875  3.32976  2.76899  3.22669     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     36   3.37482  0.13738  3.42671  2.78637     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     37   3.03791  2.56284  3.08799  0.18707     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     38   3.03791  2.56284  3.08799  0.18707     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     39   0.14875  3.32976  2.76899  3.22669     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     40   0.14875  3.32976  2.76899  3.22669     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     41   2.91196  3.53626  0.12295  3.43565     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     42   3.37482  0.13738  3.42671  2.78637     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     43   0.14875  3.32976  2.76899  3.22669     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     44   3.03791  2.56284  3.08799  0.18707     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03796  3.98322  3.98322  1.46634  0.26236  1.09861  0.40547
     45   0.14875  3.32976  2.76899  3.22669     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01916  3.96442        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyfive_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:27 2012
NSEQ  3
EFFN  3.000000
CKSUM 493454044
STATS LOCAL MSV       -8.0345  0.72034
STATS LOCAL VITERBI   -7.7520  0.72034
STATS LOCAL FORWARD   -3.8814  0.72034
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.22178  1.46087  1.44289  1.43963
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.86982  3.47591  0.13017  3.36931      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.97980  2.52563  3.03204  0.19727      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   0.15719  3.27118  2.73043  3.16274     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyfour_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:19 2012
NSEQ  3
EFFN  3.000000
CKSUM 4113701339
STATS LOCAL MSV       -7.8908  0.72186
STATS LOCAL VITERBI   -7.6156  0.72186
STATS LOCAL FORWARD   -3.7494  0.72186
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26577  1.40539  1.50943  1.37963
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   3.30705  0.14631  3.36166  2.73626      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.97980  2.52563  3.03204  0.19727     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.97980  2.52563  3.03204  0.19727     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.42422  1.33104  2.49423  0.57148     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.09338  1.42206  0.67619  2.06387     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.09338  1.42206  0.67619  2.06387     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentynine_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:59 2012
NSEQ  4
EFFN  3.285156
CKSUM 405185964
STATS LOCAL MSV       -8.2383  0.71933
STATS LOCAL VITERBI   -7.6565  0.71933
STATS LOCAL FORWARD   -4.0319  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.11058  1.38892  1.69564  1.43631
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
      1   0.14350  3.36817  2.79406  3.26870      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      2   3.41917  0.13188  3.46922  2.81884      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      3   3.07642  2.58739  3.12504  0.18065      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      4   0.14350  3.36817  2.79406  3.26870      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      5   2.93908  3.57547  0.11851  3.47887      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      6   0.14350  3.36817  2.79406  3.26870      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      7   3.41917  0.13188  3.46922  2.81884      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      8   3.41917  0.13188  3.46922  2.81884      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      9   3.07642  2.58739  3.12504  0.18065      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     10   3.41917  0.13188  3.46922  2.81884     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     11   0.14350  3.36817  2.79406  3.26870     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     12   0.14350  3.36817  2.79406  3.26870     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     13   3.07642  2.58739  3.12504  0.18065     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     14   3.07642  2.58739  3.12504  0.18065     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     15   3.07642  2.58739  3.12504  0.18065     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     16   2.93908  3.57547  0.11851  3.47887     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     17   0.14350  3.36817  2.79406  3.26870     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     18   2.93908  3.57547  0.11851  3.47887     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     19   3.41917  0.13188  3.46922  2.81884     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     20   0.14350  3.36817  2.79406  3.26870     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     21   0.14350  3.36817  2.79406  3.26870     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     22   2.93908  3.57547  0.11851  3.47887     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     23   0.14350  3.36817  2.79406  3.26870     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     24   3.07642  2.58739  3.12504  0.18065     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     25   3.07642  2.58739  3.12504  0.18065     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     26   0.14350  3.36817  2.79406  3.26870     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     27   3.41917  0.13188  3.46922  2.81884     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     28   3.41917  0.13188  3.46922  2.81884     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     29   3.41917  0.13188  3.46922  2.81884     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     30   2.93908  3.57547  0.11851  3.47887     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     31   3.41917  0.13188  3.46922  2.81884     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     32   3.07642  2.58739  3.12504  0.18065     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     33   2.93908  3.57547  0.11851  3.47887     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     34   0.14350  3.36817  2.79406  3.26870     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     35   0.14350  3.36817  2.79406  3.26870     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     36   3.41917  0.13188  3.46922  2.81884     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     37   3.07642  2.58739  3.12504  0.18065     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     38   3.07642  2.58739  3.12504  0.18065     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     39   0.14350  3.36817  2.79406  3.26870     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     40   0.14350  3.36817  2.79406  3.26870     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     41   2.93908  3.57547  0.11851  3.47887     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     42   3.41917  0.13188  3.46922  2.81884     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     43   0.14350  3.36817  2.79406  3.26870     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     44   3.07642  2.58739  3.12504  0.18065     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     45   0.14350  3.36817  2.79406  3.26870     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyonea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:59:57 2012
NSEQ  3
EFFN  3.000000
CKSUM 1175917883
STATS LOCAL MSV       -7.9911  0.72114
STATS LOCAL VITERBI   -7.8834  0.72114
STATS LOCAL FORWARD   -3.9581  0.72114
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.20657  1.30856  1.59272  1.48194
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   1.32055  2.11354  2.18868  0.69287      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.97980  2.52563  3.03204  0.19727      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   2.86982  3.47591  0.13017  3.36931     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   0.15719  3.27118  2.73043  3.16274     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   0.15719  3.27118  2.73043  3.16274     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   3.30705  0.14631  3.36166  2.73626     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.97980  2.52563  3.03204  0.19727     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   0.15719  3.27118  2.73043  3.16274     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.43258  1.35379  2.50233  0.55855     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   2.97980  2.52563  3.03204  0.19727     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   3.30705  0.14631  3.36166  2.73626     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyoneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:03 2012
NSEQ  7
EFFN  3.257324
CKSUM 2198767491
STATS LOCAL MSV       -8.1040  0.71931
STATS LOCAL VITERBI   -7.7630  0.71931
STATS LOCAL FORWARD   -4.1651  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27979  1.32449  1.52710  1.43213
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  0.00000        *
      1   3.06731  2.58158  3.11627  0.18215      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      2   3.06731  2.58158  3.11627  0.18215      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      3   2.93271  3.56625  0.11954  3.46869      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      4   3.06731  2.58158  3.11627  0.18215      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      5   2.93271  3.56625  0.11954  3.46869      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      6   0.14472  3.35911  2.78816  3.25878      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      7   3.40872  0.13316  3.45920  2.81121      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      8   3.40872  0.13316  3.45920  2.81121      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
      9   3.06731  2.58158  3.11627  0.18215      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     10   2.93271  3.56625  0.11954  3.46869     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     11   0.14472  3.35911  2.78816  3.25878     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     12   0.14472  3.35911  2.78816  3.25878     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     13   3.40872  0.13316  3.45920  2.81121     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     14   3.06731  2.58158  3.11627  0.18215     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     15   3.40872  0.13316  3.45920  2.81121     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     16   0.14472  3.35911  2.78816  3.25878     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     17   2.93271  3.56625  0.11954  3.46869     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     18   0.14472  3.35911  2.78816  3.25878     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     19   3.40872  0.13316  3.45920  2.81121     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     20   2.93271  3.56625  0.11954  3.46869     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     21   3.06731  2.58158  3.11627  0.18215     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     22   2.93271  3.56625  0.11954  3.46869     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     23   0.14472  3.35911  2.78816  3.25878     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     24   3.06731  2.58158  3.11627  0.18215     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     25   3.40872  0.13316  3.45920  2.81121     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     26   0.14472  3.35911  2.78816  3.25878     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     27   3.40872  0.13316  3.45920  2.81121     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     28   3.40872  0.13316  3.45920  2.81121     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     29   3.40872  0.13316  3.45920  2.81121     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     30   2.93271  3.56625  0.11954  3.46869     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     31   3.40872  0.13316  3.45920  2.81121     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     32   3.06731  2.58158  3.11627  0.18215     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     33   2.93271  3.56625  0.11954  3.46869     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     34   0.14472  3.35911  2.78816  3.25878     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     35   0.14472  3.35911  2.78816  3.25878     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     36   3.40872  0.13316  3.45920  2.81121     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     37   3.06731  2.58158  3.11627  0.18215     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     38   3.06731  2.58158  3.11627  0.18215     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     39   0.14472  3.35911  2.78816  3.25878     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     40   0.14472  3.35911  2.78816  3.25878     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     41   2.93271  3.56625  0.11954  3.46869     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     42   3.40872  0.13316  3.45920  2.81121     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     43   0.14472  3.35911  2.78816  3.25878     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     44   3.06731  2.58158  3.11627  0.18215     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03734  3.99954  3.99954  1.46634  0.26236  1.09861  0.40547
     45   0.14472  3.35911  2.78816  3.25878     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01884  3.98105        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyonec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:09 2012
NSEQ  2
EFFN  2.000000
CKSUM 3822712959
STATS LOCAL MSV       -7.4025  0.72799
STATS LOCAL VITERBI   -8.2146  0.72799
STATS LOCAL FORWARD   -3.4594  0.72799
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19201  1.29229  1.56685  1.54625
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   0.23862  2.84929  2.43386  2.70756     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyoned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:15 2012
NSEQ  2
EFFN  2.000000
CKSUM 3101498025
STATS LOCAL MSV       -7.4383  0.72813
STATS LOCAL VITERBI   -8.3384  0.72813
STATS LOCAL FORWARD   -3.5719  0.72813
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.29173  1.34298  1.49938  1.42350
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.57915  2.25909  2.64442  0.28946     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.81865  0.23582  2.88868  2.35662     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyonee_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:22 2012
NSEQ  2
EFFN  2.000000
CKSUM 1082780720
STATS LOCAL MSV       -7.4819  0.72804
STATS LOCAL VITERBI   -8.3452  0.72804
STATS LOCAL FORWARD   -3.6247  0.72804
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34479  1.34306  1.43607  1.42505
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.53331  3.02441  0.20344  2.88069     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.53331  3.02441  0.20344  2.88069     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyonef_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:27 2012
NSEQ  2
EFFN  2.000000
CKSUM 4075013726
STATS LOCAL MSV       -7.4346  0.72876
STATS LOCAL VITERBI   -8.2677  0.72876
STATS LOCAL FORWARD   -3.2579  0.72876
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.14531  1.27034  1.71538  1.50850
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.57915  2.25909  2.64442  0.28946      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   0.23862  2.84929  2.43386  2.70756     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.15554  1.00938  2.23102  0.88601     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyoneg_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:33 2012
NSEQ  2
EFFN  2.000000
CKSUM 1499303294
STATS LOCAL MSV       -7.4468  0.72832
STATS LOCAL VITERBI   -8.1792  0.72832
STATS LOCAL FORWARD   -3.7559  0.72832
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34665  1.28182  1.57176  1.36775
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.57915  2.25909  2.64442  0.28946      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.81865  0.23582  2.88868  2.35662      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   0.23862  2.84929  2.43386  2.70756      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.81865  0.23582  2.88868  2.35662      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.81865  0.23582  2.88868  2.35662      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.57915  2.25909  2.64442  0.28946      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.53331  3.02441  0.20344  2.88069     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   0.23862  2.84929  2.43386  2.70756     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.57915  2.25909  2.64442  0.28946     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   0.23862  2.84929  2.43386  2.70756     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.81865  0.23582  2.88868  2.35662     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.57915  2.25909  2.64442  0.28946     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.81865  0.23582  2.88868  2.35662     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.53331  3.02441  0.20344  2.88069     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.57915  2.25909  2.64442  0.28946     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   0.23862  2.84929  2.43386  2.70756     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.81865  0.23582  2.88868  2.35662     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   0.23862  2.84929  2.43386  2.70756     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.53331  3.02441  0.20344  2.88069     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   0.23862  2.84929  2.43386  2.70756     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyoneh_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:00:55 2012
NSEQ  17
EFFN  3.490479
CKSUM 2048180296
STATS LOCAL MSV       -7.4432  0.71933
STATS LOCAL VITERBI   -7.7454  0.71933
STATS LOCAL FORWARD   -4.3181  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.35818  1.20843  1.44293  1.57036
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  0.00000        *
      1   2.86208  2.00642  2.91898  0.28184      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      2   3.49321  0.12326  3.54008  2.87255      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      3   3.49321  0.12326  3.54008  2.87255      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      4   3.49321  0.12326  3.54008  2.87255      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      5   2.24900  3.24331  0.20866  3.12836      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      6   0.54374  2.63770  1.32553  2.49810      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      7   3.49321  0.12326  3.54008  2.87255      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      8   3.49321  0.12326  3.54008  2.87255      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
      9   3.14166  2.62884  3.18778  0.17036      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     10   3.49321  0.12326  3.54008  2.87255     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     11   2.98363  3.64050  0.11155  3.55071     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     12   2.98363  3.64050  0.11155  3.55071     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     13   0.13519  3.43251  2.83575  3.33917     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     14   3.14166  2.62884  3.18778  0.17036     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     15   3.04000  0.24307  3.10105  2.09603     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     16   0.13519  3.43251  2.83575  3.33917     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     17   2.98363  3.64050  0.11155  3.55071     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     18   2.98363  3.64050  0.11155  3.55071     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     19   3.03719  0.24407  3.09832  2.09172     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     20   2.98363  3.64050  0.11155  3.55071     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     21   3.14166  2.62884  3.18778  0.17036     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     22   2.98363  3.64050  0.11155  3.55071     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     23   0.13519  3.43251  2.83575  3.33917     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     24   0.13519  3.43251  2.83575  3.33917     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     25   3.14166  2.62884  3.18778  0.17036     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     26   0.13519  3.43251  2.83575  3.33917     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     27   3.49321  0.12326  3.54008  2.87255     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     28   3.49321  0.12326  3.54008  2.87255     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     29   3.49321  0.12326  3.54008  2.87255     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     30   2.98363  3.64050  0.11155  3.55071     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     31   3.49321  0.12326  3.54008  2.87255     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     32   3.14166  2.62884  3.18778  0.17036     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     33   2.98363  3.64050  0.11155  3.55071     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     34   0.13519  3.43251  2.83575  3.33917     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     35   0.13519  3.43251  2.83575  3.33917     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     36   3.49321  0.12326  3.54008  2.87255     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     37   3.14166  2.62884  3.18778  0.17036     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     38   3.14166  2.62884  3.18778  0.17036     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     39   0.13519  3.43251  2.83575  3.33917     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     40   0.13519  3.43251  2.83575  3.33917     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     41   2.98363  3.64050  0.11155  3.55071     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     42   3.49321  0.12326  3.54008  2.87255     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     43   0.13519  3.43251  2.83575  3.33917     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     44   3.14166  2.62884  3.18778  0.17036     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03578  4.04138  4.04138  1.46634  0.26236  1.09861  0.40547
     45   0.13519  3.43251  2.83575  3.33917     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01805  4.02365        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentyseven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:42 2012
NSEQ  25
EFFN  3.604126
CKSUM 615754615
STATS LOCAL MSV       -7.7339  0.71932
STATS LOCAL VITERBI   -7.5405  0.71932
STATS LOCAL FORWARD   -4.1531  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.19991  1.44050  1.62854  1.32518
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  0.00000        *
      1   1.52004  2.24459  2.37189  0.54125      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      2   3.00662  3.67429  0.10812  3.58812      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      3   3.17630  2.65080  3.22106  0.16517      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      4   0.13104  3.46628  2.85752  3.37621      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      5   3.00662  3.67429  0.10812  3.58812      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      6   3.00662  3.67429  0.10812  3.58812      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      7   3.53193  0.11902  3.57709  2.90040      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      8   3.53193  0.11902  3.57709  2.90040      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
      9   3.17630  2.65080  3.22106  0.16517      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     10   3.53193  0.11902  3.57709  2.90040     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     11   0.13104  3.46628  2.85752  3.37621     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     12   0.13104  3.46628  2.85752  3.37621     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     13   0.19070  2.81213  2.72186  3.04092     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     14   3.17630  2.65080  3.22106  0.16517     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     15   0.13104  3.46628  2.85752  3.37621     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     16   0.13104  3.46628  2.85752  3.37621     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     17   3.17630  2.65080  3.22106  0.16517     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     18   3.00662  3.67429  0.10812  3.58812     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     19   3.17630  2.65080  3.22106  0.16517     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     20   3.00662  3.67429  0.10812  3.58812     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     21   3.17630  2.65080  3.22106  0.16517     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     22   3.00662  3.67429  0.10812  3.58812     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     23   0.13104  3.46628  2.85752  3.37621     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     24   3.53193  0.11902  3.57709  2.90040     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     25   3.17630  2.65080  3.22106  0.16517     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     26   0.13104  3.46628  2.85752  3.37621     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     27   3.53193  0.11902  3.57709  2.90040     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     28   3.53193  0.11902  3.57709  2.90040     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     29   3.53193  0.11902  3.57709  2.90040     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     30   3.53193  0.11902  3.57709  2.90040     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     31   3.53193  0.11902  3.57709  2.90040     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     32   3.17630  2.65080  3.22106  0.16517     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     33   0.13104  3.46628  2.85752  3.37621     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     34   0.13104  3.46628  2.85752  3.37621     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     35   0.13104  3.46628  2.85752  3.37621     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     36   2.95192  2.13272  3.00566  0.24880     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     37   3.17630  2.65080  3.22106  0.16517     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     38   3.17630  2.65080  3.22106  0.16517     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     39   0.13104  3.46628  2.85752  3.37621     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     40   0.13104  3.46628  2.85752  3.37621     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     41   3.00662  3.67429  0.10812  3.58812     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     42   3.53193  0.11902  3.57709  2.90040     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     43   0.13104  3.46628  2.85752  3.37621     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     44   3.17630  2.65080  3.22106  0.16517     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03507  4.06115  4.06115  1.46634  0.26236  1.09861  0.40547
     45   1.94400  2.29353  0.39444  2.50223     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01769  4.04378        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentysix_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:34 2012
NSEQ  3
EFFN  3.000000
CKSUM 1148524890
STATS LOCAL MSV       -8.0380  0.72036
STATS LOCAL VITERBI   -7.7395  0.72036
STATS LOCAL FORWARD   -3.7355  0.72036
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33949  1.45941  1.37656  1.37357
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   2.97980  2.52563  3.03204  0.19727      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   3.30705  0.14631  3.36166  2.73626      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   3.30705  0.14631  3.36166  2.73626      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   2.97980  2.52563  3.03204  0.19727      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.86982  3.47591  0.13017  3.36931     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   0.15719  3.27118  2.73043  3.16274     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.86982  3.47591  0.13017  3.36931     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   3.30705  0.14631  3.36166  2.73626     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.86982  3.47591  0.13017  3.36931     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   0.15719  3.27118  2.73043  3.16274     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   0.15719  3.27118  2.73043  3.16274     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   0.15719  3.27118  2.73043  3.16274     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   2.86982  3.47591  0.13017  3.36931     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   0.15719  3.27118  2.73043  3.16274     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   0.15719  3.27118  2.73043  3.16274     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentythree_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:11 2012
NSEQ  8
EFFN  3.285156
CKSUM 2607871508
STATS LOCAL MSV       -8.2251  0.71933
STATS LOCAL VITERBI   -7.5953  0.71933
STATS LOCAL FORWARD   -4.0932  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16481  1.25871  1.80031  1.43234
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  0.00000        *
      1   0.14350  3.36817  2.79406  3.26870      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      2   3.41917  0.13188  3.46922  2.81884      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      3   0.14350  3.36817  2.79406  3.26870      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      4   3.07642  2.58739  3.12504  0.18065      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      5   0.14350  3.36817  2.79406  3.26870      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      6   2.93908  3.57547  0.11851  3.47887      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      7   3.41917  0.13188  3.46922  2.81884      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      8   3.41917  0.13188  3.46922  2.81884      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
      9   3.07642  2.58739  3.12504  0.18065      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     10   3.41917  0.13188  3.46922  2.81884     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     11   0.14350  3.36817  2.79406  3.26870     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     12   0.14350  3.36817  2.79406  3.26870     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     13   3.41917  0.13188  3.46922  2.81884     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     14   3.07642  2.58739  3.12504  0.18065     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     15   3.41917  0.13188  3.46922  2.81884     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     16   0.14350  3.36817  2.79406  3.26870     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     17   3.07642  2.58739  3.12504  0.18065     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     18   2.93908  3.57547  0.11851  3.47887     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     19   3.07642  2.58739  3.12504  0.18065     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     20   2.93908  3.57547  0.11851  3.47887     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     21   0.14350  3.36817  2.79406  3.26870     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     22   2.93908  3.57547  0.11851  3.47887     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     23   0.14350  3.36817  2.79406  3.26870     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     24   3.41917  0.13188  3.46922  2.81884     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     25   3.07642  2.58739  3.12504  0.18065     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     26   0.14350  3.36817  2.79406  3.26870     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     27   3.41917  0.13188  3.46922  2.81884     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     28   3.41917  0.13188  3.46922  2.81884     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     29   3.41917  0.13188  3.46922  2.81884     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     30   3.41917  0.13188  3.46922  2.81884     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     31   3.41917  0.13188  3.46922  2.81884     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     32   3.07642  2.58739  3.12504  0.18065     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     33   2.93908  3.57547  0.11851  3.47887     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     34   0.14350  3.36817  2.79406  3.26870     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     35   0.14350  3.36817  2.79406  3.26870     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     36   3.07642  2.58739  3.12504  0.18065     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     37   3.07642  2.58739  3.12504  0.18065     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     38   3.07642  2.58739  3.12504  0.18065     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     39   0.14350  3.36817  2.79406  3.26870     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     40   0.14350  3.36817  2.79406  3.26870     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     41   2.93908  3.57547  0.11851  3.47887     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     42   3.41917  0.13188  3.46922  2.81884     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     43   0.14350  3.36817  2.79406  3.26870     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     44   3.07642  2.58739  3.12504  0.18065     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03714  4.00463  4.00463  1.46634  0.26236  1.09861  0.40547
     45   0.14350  3.36817  2.79406  3.26870     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01874  3.98623        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_twentytwo_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 23:01:03 2012
NSEQ  5
EFFN  3.559570
CKSUM 3915778671
STATS LOCAL MSV       -7.9350  0.71931
STATS LOCAL VITERBI   -7.3801  0.71931
STATS LOCAL FORWARD   -4.1967  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.08783  1.29601  1.90713  1.42327
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  0.00000        *
      1   0.13263  3.45319  2.84909  3.36185      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      2   1.15878  2.17074  2.22351  0.76828      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      3   0.13263  3.45319  2.84909  3.36185      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      4   3.51693  0.12064  3.56276  2.88963      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      5   0.13263  3.45319  2.84909  3.36185      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      6   0.13263  3.45319  2.84909  3.36185      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      7   3.51693  0.12064  3.56276  2.88963      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      8   3.51693  0.12064  3.56276  2.88963      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      9   3.16284  2.64227  3.20813  0.16716      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     10   3.51693  0.12064  3.56276  2.88963     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     11   0.13263  3.45319  2.84909  3.36185     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     12   0.13263  3.45319  2.84909  3.36185     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     13   3.51693  0.12064  3.56276  2.88963     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     14   3.16284  2.64227  3.20813  0.16716     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     15   3.51693  0.12064  3.56276  2.88963     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     16   0.13263  3.45319  2.84909  3.36185     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     17   3.16284  2.64227  3.20813  0.16716     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     18   0.13263  3.45319  2.84909  3.36185     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     19   3.16284  2.64227  3.20813  0.16716     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     20   2.99774  3.66122  0.10943  3.57364     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     21   2.99774  3.66122  0.10943  3.57364     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     22   2.99774  3.66122  0.10943  3.57364     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     23   0.13263  3.45319  2.84909  3.36185     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     24   2.48941  1.18066  2.55916  0.62999     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     25   3.16284  2.64227  3.20813  0.16716     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     26   0.13263  3.45319  2.84909  3.36185     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     27   3.51693  0.12064  3.56276  2.88963     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     28   3.51693  0.12064  3.56276  2.88963     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     29   3.51693  0.12064  3.56276  2.88963     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     30   3.51693  0.12064  3.56276  2.88963     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     31   3.51693  0.12064  3.56276  2.88963     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     32   3.16284  2.64227  3.20813  0.16716     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     33   2.99774  3.66122  0.10943  3.57364     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     34   0.13263  3.45319  2.84909  3.36185     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     35   0.13263  3.45319  2.84909  3.36185     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     36   3.16284  2.64227  3.20813  0.16716     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     37   3.16284  2.64227  3.20813  0.16716     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     38   3.16284  2.64227  3.20813  0.16716     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     39   0.13263  3.45319  2.84909  3.36185     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     40   0.13263  3.45319  2.84909  3.36185     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     41   2.99774  3.66122  0.10943  3.57364     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     42   3.51693  0.12064  3.56276  2.88963     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     43   0.13263  3.45319  2.84909  3.36185     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     44   3.16284  2.64227  3.20813  0.16716     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     45   0.13263  3.45319  2.84909  3.36185     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01783  4.03593        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Metazoa_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Mon Feb 27 22:49:34 2012
NSEQ  24
EFFN  4.110352
CKSUM 3861060913
STATS LOCAL MSV       -7.2757  0.71932
STATS LOCAL VITERBI   -7.5425  0.71932
STATS LOCAL FORWARD   -4.1954  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.24577  1.38621  1.49131  1.43893
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  0.00000        *
      1   2.52986  2.30029  2.91720  0.26655      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      2   2.55091  1.00702  2.62071  0.72581      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      3   2.84685  1.70365  2.90630  0.34916      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      4   3.31876  2.74119  3.35792  0.14560      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      5   3.09695  3.80803  0.09565  3.73654      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      6   0.11574  3.60237  2.94493  3.52575      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      7   3.68657  0.10364  3.72466  3.01034      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      8   3.68657  0.10364  3.72466  3.01034      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
      9   3.31876  2.74119  3.35792  0.14560      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     10   2.20818  0.75168  1.22058  2.09179     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     11   0.11574  3.60237  2.94493  3.52575     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     12   3.09695  3.80803  0.09565  3.73654     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     13   0.11574  3.60237  2.94493  3.52575     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     14   2.24775  2.24807  1.22321  0.70426     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     15   3.68657  0.10364  3.72466  3.01034     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     16   0.11574  3.60237  2.94493  3.52575     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     17   3.09695  3.80803  0.09565  3.73654     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     18   3.09695  3.80803  0.09565  3.73654     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     19   3.68657  0.10364  3.72466  3.01034     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     20   0.11574  3.60237  2.94493  3.52575     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     21   0.11574  3.60237  2.94493  3.52575     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     22   3.09695  3.80803  0.09565  3.73654     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     23   2.00849  3.22105  0.24712  3.10445     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     24   3.03663  0.27971  3.09824  1.89132     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     25   3.31876  2.74119  3.35792  0.14560     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     26   0.11574  3.60237  2.94493  3.52575     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     27   3.68657  0.10364  3.72466  3.01034     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     28   3.68657  0.10364  3.72466  3.01034     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     29   3.68657  0.10364  3.72466  3.01034     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     30   3.09695  3.80803  0.09565  3.73654     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     31   3.68657  0.10364  3.72466  3.01034     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     32   3.31876  2.74119  3.35792  0.14560     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     33   3.09695  3.80803  0.09565  3.73654     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     34   0.11574  3.60237  2.94493  3.52575     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     35   0.11574  3.60237  2.94493  3.52575     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     36   2.99452  1.98351  3.04820  0.26800     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     37   3.31876  2.74119  3.35792  0.14560     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     38   3.31876  2.74119  3.35792  0.14560     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     39   0.11574  3.60237  2.94493  3.52575     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     40   0.11574  3.60237  2.94493  3.52575     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     41   3.09695  3.80803  0.09565  3.73654     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     42   3.68657  0.10364  3.72466  3.01034     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     43   0.11574  3.60237  2.94493  3.52575     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     44   3.31876  2.74119  3.35792  0.14560     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03221  4.14478  4.14478  1.46634  0.26236  1.09861  0.40547
     45   0.11574  3.60237  2.94493  3.52575     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01623  4.12880        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_eight_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:41 2012
NSEQ  16
EFFN  3.191406
CKSUM 2446389716
STATS LOCAL MSV       -8.0800  0.71932
STATS LOCAL VITERBI   -7.7749  0.71932
STATS LOCAL FORWARD   -4.3446  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33411  1.54690  1.19059  1.51568
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  0.00000        *
      1   0.14770  3.33730  2.77393  3.23493      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      2   2.91732  3.54398  0.12206  3.44415      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      3   3.04545  2.56765  3.09524  0.18579      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      4   3.38354  0.13628  3.43507  2.79277      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      5   2.91732  3.54398  0.12206  3.44415      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      6   3.04545  2.56765  3.09524  0.18579      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      7   0.14770  3.33730  2.77393  3.23493      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      8   0.14770  3.33730  2.77393  3.23493      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
      9   3.38354  0.13628  3.43507  2.79277      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     10   0.14770  3.33730  2.77393  3.23493     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     11   0.14770  3.33730  2.77393  3.23493     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     12   2.91732  3.54398  0.12206  3.44415     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     13   2.91732  3.54398  0.12206  3.44415     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     14   3.04545  2.56765  3.09524  0.18579     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     15   0.14770  3.33730  2.77393  3.23493     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     16   3.38354  0.13628  3.43507  2.79277     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     17   3.38354  0.13628  3.43507  2.79277     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     18   3.04545  2.56765  3.09524  0.18579     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     19   2.91732  3.54398  0.12206  3.44415     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     20   3.04545  2.56765  3.09524  0.18579     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     21   0.14770  3.33730  2.77393  3.23493     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     22   2.91732  3.54398  0.12206  3.44415     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     23   2.91732  3.54398  0.12206  3.44415     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     24   3.04545  2.56765  3.09524  0.18579     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     25   2.91732  3.54398  0.12206  3.44415     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     26   0.14770  3.33730  2.77393  3.23493     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     27   0.14770  3.33730  2.77393  3.23493     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     28   3.38354  0.13628  3.43507  2.79277     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     29   3.38354  0.13628  3.43507  2.79277     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     30   3.04545  2.56765  3.09524  0.18579     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     31   2.91732  3.54398  0.12206  3.44415     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     32   3.38354  0.13628  3.43507  2.79277     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     33   0.14770  3.33730  2.77393  3.23493     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     34   2.91732  3.54398  0.12206  3.44415     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     35   2.91732  3.54398  0.12206  3.44415     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     36   3.04545  2.56765  3.09524  0.18579     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     37   2.91732  3.54398  0.12206  3.44415     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     38   2.91732  3.54398  0.12206  3.44415     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     39   0.14770  3.33730  2.77393  3.23493     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     40   3.04545  2.56765  3.09524  0.18579     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     41   3.38354  0.13628  3.43507  2.79277     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     42   0.14770  3.33730  2.77393  3.23493     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     43   3.04545  2.56765  3.09524  0.18579     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     44   3.38354  0.13628  3.43507  2.79277     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03780  3.98739  3.98739  1.46634  0.26236  1.09861  0.40547
     45   2.91732  3.54398  0.12206  3.44415     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01908  3.96867        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_eleven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:28:00 2012
NSEQ  10
EFFN  3.208008
CKSUM 3737760971
STATS LOCAL MSV       -8.0645  0.71933
STATS LOCAL VITERBI   -7.5468  0.71933
STATS LOCAL FORWARD   -4.2182  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.39966  1.54309  1.19163  1.44446
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  0.00000        *
      1   0.14694  3.34284  2.77755  3.24098      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      2   2.92124  3.54964  0.12142  3.45039      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      3   3.05099  2.57118  3.10057  0.18486      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      4   3.38993  0.13548  3.44120  2.79746      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      5   2.92124  3.54964  0.12142  3.45039      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      6   3.05099  2.57118  3.10057  0.18486      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      7   0.14694  3.34284  2.77755  3.24098      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      8   0.14694  3.34284  2.77755  3.24098      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
      9   3.38993  0.13548  3.44120  2.79746      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     10   0.14694  3.34284  2.77755  3.24098     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     11   0.14694  3.34284  2.77755  3.24098     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     12   2.92124  3.54964  0.12142  3.45039     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     13   2.92124  3.54964  0.12142  3.45039     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     14   3.05099  2.57118  3.10057  0.18486     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     15   2.92124  3.54964  0.12142  3.45039     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     16   2.92124  3.54964  0.12142  3.45039     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     17   3.38993  0.13548  3.44120  2.79746     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     18   3.05099  2.57118  3.10057  0.18486     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     19   2.92124  3.54964  0.12142  3.45039     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     20   3.05099  2.57118  3.10057  0.18486     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     21   0.14694  3.34284  2.77755  3.24098     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     22   2.92124  3.54964  0.12142  3.45039     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     23   2.92124  3.54964  0.12142  3.45039     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     24   3.05099  2.57118  3.10057  0.18486     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     25   2.92124  3.54964  0.12142  3.45039     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     26   0.14694  3.34284  2.77755  3.24098     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     27   0.14694  3.34284  2.77755  3.24098     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     28   3.38993  0.13548  3.44120  2.79746     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     29   3.38993  0.13548  3.44120  2.79746     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     30   3.05099  2.57118  3.10057  0.18486     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     31   2.92124  3.54964  0.12142  3.45039     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     32   3.38993  0.13548  3.44120  2.79746     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     33   3.05099  2.57118  3.10057  0.18486     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     34   2.92124  3.54964  0.12142  3.45039     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     35   3.38993  0.13548  3.44120  2.79746     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     36   3.38993  0.13548  3.44120  2.79746     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     37   2.92124  3.54964  0.12142  3.45039     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     38   2.92124  3.54964  0.12142  3.45039     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     39   0.14694  3.34284  2.77755  3.24098     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     40   3.05099  2.57118  3.10057  0.18486     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     41   3.38993  0.13548  3.44120  2.79746     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     42   0.14694  3.34284  2.77755  3.24098     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     43   3.05099  2.57118  3.10057  0.18486     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     44   3.05099  2.57118  3.10057  0.18486     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03768  3.99047  3.99047  1.46634  0.26236  1.09861  0.40547
     45   0.14694  3.34284  2.77755  3.24098     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01902  3.97180        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:18 2012
NSEQ  591
EFFN  3.386238
CKSUM 2887535700
STATS LOCAL MSV       -7.4974  0.71934
STATS LOCAL VITERBI   -7.6825  0.71934
STATS LOCAL FORWARD   -4.1124  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26745  1.62592  1.24870  1.44883
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  0.00000        *
      1   0.13927  3.40040  2.81499  3.30397      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      2   2.96152  3.60814  0.11495  3.51494      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      3   3.10898  2.60809  3.15635  0.17543      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      4   3.39712  0.13994  3.44732  2.72887      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      5   2.96152  3.60814  0.11495  3.51494      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      6   3.10898  2.60809  3.15635  0.17543      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      7   0.13927  3.40040  2.81499  3.30397      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      8   0.13927  3.40040  2.81499  3.30397      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
      9   3.45629  0.12748  3.50476  2.84585      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     10   0.13927  3.40040  2.81499  3.30397     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     11   0.13927  3.40040  2.81499  3.30397     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     12   2.96152  3.60814  0.11495  3.51494     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     13   2.96152  3.60814  0.11495  3.51494     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     14   3.07323  2.51816  3.12180  0.18748     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     15   3.06966  2.50946  3.11836  0.18872     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     16   3.10898  2.60809  3.15635  0.17543     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     17   3.36000  0.14815  3.41138  2.65969     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     18   3.26516  0.15740  3.13844  2.74735     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     19   2.87964  3.24062  0.14052  3.32982     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     20   3.10898  2.60809  3.15635  0.17543     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     21   0.13927  3.40040  2.81499  3.30397     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.05903  4.02289  3.23357  1.46634  0.26236  1.09861  0.40547
     22   2.93472  3.56915  0.11922  3.47190     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00114  4.00114  1.46634  0.26236  0.64622  0.74239
     23   2.96152  3.60814  0.11495  3.51494     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     24   2.99011  2.56246  2.89768  0.20156     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     25   2.96152  3.60814  0.11495  3.51494     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     26   0.13927  3.40040  2.81499  3.30397     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     27   0.13927  3.40040  2.81499  3.30397     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03825  4.02289  3.93074  1.46634  0.26236  1.09861  0.40547
     28   3.45281  0.12788  3.50143  2.84332     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03652  4.02116  4.02116  1.46634  0.26236  1.03813  0.43714
     29   3.20662  0.14667  3.38275  2.78108     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     30   3.07681  2.52693  3.12525  0.18625     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     31   2.84254  3.36777  0.15302  3.01292     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     32   3.45629  0.12748  3.50476  2.84585     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     33   2.96152  3.60814  0.11495  3.51494     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     34   2.87301  3.42675  0.14271  3.12424     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     35   0.13927  3.40040  2.81499  3.30397     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     36   0.13927  3.40040  2.81499  3.30397     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     37   2.96152  3.60814  0.11495  3.51494     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     38   2.96152  3.60814  0.11495  3.51494     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     39   0.13927  3.40040  2.81499  3.30397     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     40   3.10898  2.60809  3.15635  0.17543     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     41   3.45629  0.12748  3.50476  2.84585     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     42   0.15066  3.35632  2.71005  3.25812     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     43   3.10898  2.60809  3.15635  0.17543     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     44   2.89278  2.11895  2.94823  0.25879     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03646  4.02289  4.02289  1.46634  0.26236  1.09861  0.40547
     45   0.14853  3.36439  2.72868  3.26658     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01840  4.00483        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:06 2012
NSEQ  4
EFFN  3.472656
CKSUM 3645550443
STATS LOCAL MSV       -7.4702  0.71932
STATS LOCAL VITERBI   -7.5589  0.71932
STATS LOCAL FORWARD   -4.2514  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26293  1.64993  1.23935  1.44588
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  0.00000        *
      1   0.13586  3.42710  2.83226  3.33324      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      2   2.97992  3.63506  0.11211  3.54469      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      3   3.13614  2.62533  3.18246  0.17120      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      4   3.48700  0.12396  3.53414  2.86806      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      5   2.97992  3.63506  0.11211  3.54469      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      6   3.13614  2.62533  3.18246  0.17120      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      7   0.13586  3.42710  2.83226  3.33324      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      8   0.13586  3.42710  2.83226  3.33324      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
      9   3.48700  0.12396  3.53414  2.86806      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     10   0.13586  3.42710  2.83226  3.33324     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     11   0.13586  3.42710  2.83226  3.33324     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     12   2.97992  3.63506  0.11211  3.54469     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     13   2.97992  3.63506  0.11211  3.54469     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     14   3.13614  2.62533  3.18246  0.17120     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     15   0.13586  3.42710  2.83226  3.33324     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     16   2.97992  3.63506  0.11211  3.54469     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     17   3.48700  0.12396  3.53414  2.86806     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     18   3.13614  2.62533  3.18246  0.17120     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     19   2.97992  3.63506  0.11211  3.54469     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     20   3.13614  2.62533  3.18246  0.17120     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     21   0.13586  3.42710  2.83226  3.33324     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     22   2.97992  3.63506  0.11211  3.54469     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     23   2.97992  3.63506  0.11211  3.54469     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     24   3.13614  2.62533  3.18246  0.17120     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     25   2.97992  3.63506  0.11211  3.54469     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     26   0.13586  3.42710  2.83226  3.33324     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     27   0.13586  3.42710  2.83226  3.33324     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     28   3.48700  0.12396  3.53414  2.86806     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     29   3.48700  0.12396  3.53414  2.86806     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     30   3.13614  2.62533  3.18246  0.17120     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     31   2.97992  3.63506  0.11211  3.54469     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     32   3.48700  0.12396  3.53414  2.86806     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     33   2.43204  0.95279  2.50379  0.81035     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     34   2.97992  3.63506  0.11211  3.54469     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     35   0.13586  3.42710  2.83226  3.33324     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     36   3.13614  2.62533  3.18246  0.17120     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     37   2.97992  3.63506  0.11211  3.54469     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     38   2.97992  3.63506  0.11211  3.54469     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     39   0.13586  3.42710  2.83226  3.33324     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     40   3.13614  2.62533  3.18246  0.17120     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     41   3.48700  0.12396  3.53414  2.86806     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     42   0.13586  3.42710  2.83226  3.33324     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     43   2.43204  0.95279  2.50379  0.81035     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     44   3.13614  2.62533  3.18246  0.17120     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03589  4.03824  4.03824  1.46634  0.26236  1.09861  0.40547
     45   0.13586  3.42710  2.83226  3.33324     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01811  4.02046        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:26:32 2012
NSEQ  2
EFFN  2.000000
CKSUM 1503601274
STATS LOCAL MSV       -7.3789  0.72782
STATS LOCAL VITERBI   -8.2132  0.72782
STATS LOCAL FORWARD   -3.5272  0.72782
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28360  1.60112  1.25644  1.44128
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_seven_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:33 2012
NSEQ  18
EFFN  3.229980
CKSUM 3803743119
STATS LOCAL MSV       -8.0117  0.71931
STATS LOCAL VITERBI   -7.6232  0.71931
STATS LOCAL FORWARD   -4.2368  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27186  1.62652  1.24657  1.44567
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  0.00000        *
      1   0.14594  3.35012  2.78230  3.24895      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      2   2.92638  3.55708  0.12057  3.45859      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      3   3.05828  2.57583  3.10759  0.18364      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      4   3.39834  0.13443  3.44926  2.80362      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      5   2.92638  3.55708  0.12057  3.45859      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      6   3.05828  2.57583  3.10759  0.18364      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      7   0.14594  3.35012  2.78230  3.24895      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      8   0.14594  3.35012  2.78230  3.24895      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
      9   3.39834  0.13443  3.44926  2.80362      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     10   0.14594  3.35012  2.78230  3.24895     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     11   0.14594  3.35012  2.78230  3.24895     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     12   2.92638  3.55708  0.12057  3.45859     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     13   2.92638  3.55708  0.12057  3.45859     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     14   3.05828  2.57583  3.10759  0.18364     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     15   0.14594  3.35012  2.78230  3.24895     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     16   3.05828  2.57583  3.10759  0.18364     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     17   3.39834  0.13443  3.44926  2.80362     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     18   3.05828  2.57583  3.10759  0.18364     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     19   2.92638  3.55708  0.12057  3.45859     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     20   3.05828  2.57583  3.10759  0.18364     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     21   0.14594  3.35012  2.78230  3.24895     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     22   2.92638  3.55708  0.12057  3.45859     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     23   2.92638  3.55708  0.12057  3.45859     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     24   3.05828  2.57583  3.10759  0.18364     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     25   2.92638  3.55708  0.12057  3.45859     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     26   0.14594  3.35012  2.78230  3.24895     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     27   0.14594  3.35012  2.78230  3.24895     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     28   3.39834  0.13443  3.44926  2.80362     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     29   3.39834  0.13443  3.44926  2.80362     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     30   3.05828  2.57583  3.10759  0.18364     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     31   2.92638  3.55708  0.12057  3.45859     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     32   3.39834  0.13443  3.44926  2.80362     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     33   0.14594  3.35012  2.78230  3.24895     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     34   2.92638  3.55708  0.12057  3.45859     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     35   0.14594  3.35012  2.78230  3.24895     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     36   3.05828  2.57583  3.10759  0.18364     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     37   2.92638  3.55708  0.12057  3.45859     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     38   2.92638  3.55708  0.12057  3.45859     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     39   0.14594  3.35012  2.78230  3.24895     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     40   3.05828  2.57583  3.10759  0.18364     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     41   3.39834  0.13443  3.44926  2.80362     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     42   0.14594  3.35012  2.78230  3.24895     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     43   3.05828  2.57583  3.10759  0.18364     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     44   3.39834  0.13443  3.44926  2.80362     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03753  3.99452  3.99452  1.46634  0.26236  1.09861  0.40547
     45   2.92638  3.55708  0.12057  3.45859     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01894  3.97593        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_six_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:25 2012
NSEQ  2
EFFN  2.000000
CKSUM 4122535879
STATS LOCAL MSV       -7.3837  0.72782
STATS LOCAL VITERBI   -8.2233  0.72782
STATS LOCAL FORWARD   -3.6249  0.72782
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.28359  1.60112  1.25644  1.44128
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.53331  3.02441  0.20344  2.88069      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   2.57915  2.25909  2.64442  0.28946      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.81865  0.23582  2.88868  2.35662      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   0.23862  2.84929  2.43386  2.70756      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   0.23862  2.84929  2.43386  2.70756     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.53331  3.02441  0.20344  2.88069     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   0.23862  2.84929  2.43386  2.70756     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.81865  0.23582  2.88868  2.35662     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.57915  2.25909  2.64442  0.28946     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.53331  3.02441  0.20344  2.88069     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.53331  3.02441  0.20344  2.88069     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.57915  2.25909  2.64442  0.28946     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   0.23862  2.84929  2.43386  2.70756     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.57915  2.25909  2.64442  0.28946     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.53331  3.02441  0.20344  2.88069     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   0.23862  2.84929  2.43386  2.70756     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.57915  2.25909  2.64442  0.28946     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.53331  3.02441  0.20344  2.88069     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.53331  3.02441  0.20344  2.88069     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   0.23862  2.84929  2.43386  2.70756     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.57915  2.25909  2.64442  0.28946     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   0.23862  2.84929  2.43386  2.70756     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   0.23862  2.84929  2.43386  2.70756     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_ten_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:27:52 2012
NSEQ  62
EFFN  3.265747
CKSUM 2000784101
STATS LOCAL MSV       -8.1222  0.71931
STATS LOCAL VITERBI   -7.5567  0.71931
STATS LOCAL FORWARD   -4.4003  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33291  1.62010  1.24727  1.38180
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  0.00000        *
      1   0.14435  3.36186  2.78995  3.26179      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      2   2.93465  3.56905  0.11923  3.47179      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      3   3.00370  2.42271  3.05476  0.20508      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      4   3.41189  0.13277  3.46224  2.81353      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      5   2.93465  3.56905  0.11923  3.47179      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      6   3.07007  2.58334  3.11893  0.18169      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      7   0.14435  3.36186  2.78995  3.26179      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      8   0.14435  3.36186  2.78995  3.26179      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
      9   3.41189  0.13277  3.46224  2.81353      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     10   0.14435  3.36186  2.78995  3.26179     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     11   0.14435  3.36186  2.78995  3.26179     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     12   2.93465  3.56905  0.11923  3.47179     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     13   2.93465  3.56905  0.11923  3.47179     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     14   3.07007  2.58334  3.11893  0.18169     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     15   0.14435  3.36186  2.78995  3.26179     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     16   2.93465  3.56905  0.11923  3.47179     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     17   3.41189  0.13277  3.46224  2.81353     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     18   3.07007  2.58334  3.11893  0.18169     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     19   2.93465  3.56905  0.11923  3.47179     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     20   3.00370  2.42271  3.05476  0.20508     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     21   0.14435  3.36186  2.78995  3.26179     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     22   2.93465  3.56905  0.11923  3.47179     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     23   2.93465  3.56905  0.11923  3.47179     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     24   3.07007  2.58334  3.11893  0.18169     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     25   2.93465  3.56905  0.11923  3.47179     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     26   0.14435  3.36186  2.78995  3.26179     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     27   0.14435  3.36186  2.78995  3.26179     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     28   3.41189  0.13277  3.46224  2.81353     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     29   3.41189  0.13277  3.46224  2.81353     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     30   3.07007  2.58334  3.11893  0.18169     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     31   2.93465  3.56905  0.11923  3.47179     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     32   3.41189  0.13277  3.46224  2.81353     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     33   3.07007  2.58334  3.11893  0.18169     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     34   2.93465  3.56905  0.11923  3.47179     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     35   3.41189  0.13277  3.46224  2.81353     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     36   3.07007  2.58334  3.11893  0.18169     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     37   2.93465  3.56905  0.11923  3.47179     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     38   2.93465  3.56905  0.11923  3.47179     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     39   0.14435  3.36186  2.78995  3.26179     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     40   3.07007  2.58334  3.11893  0.18169     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     41   3.41189  0.13277  3.46224  2.81353     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     42   0.14435  3.36186  2.78995  3.26179     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     43   3.07007  2.58334  3.11893  0.18169     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     44   3.07007  2.58334  3.11893  0.18169     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03728  4.00109  4.00109  1.46634  0.26236  1.09861  0.40547
     45   0.14435  3.36186  2.78995  3.26179     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98262        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:26:53 2012
NSEQ  48
EFFN  3.360352
CKSUM 289798115
STATS LOCAL MSV       -8.0419  0.71933
STATS LOCAL VITERBI   -7.6796  0.71933
STATS LOCAL FORWARD   -4.4230  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32949  1.58777  1.24433  1.41522
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  0.00000        *
      1   0.14032  3.39225  2.80970  3.29505      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      2   2.95587  3.59990  0.11584  3.50584      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      3   3.10072  2.60284  3.14841  0.17674      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      4   3.44691  0.12857  3.49579  2.83904      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      5   2.95587  3.59990  0.11584  3.50584      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      6   3.10072  2.60284  3.14841  0.17674      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      7   0.14032  3.39225  2.80970  3.29505      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      8   0.14032  3.39225  2.80970  3.29505      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
      9   3.44691  0.12857  3.49579  2.83904      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     10   0.14032  3.39225  2.80970  3.29505     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     11   0.14032  3.39225  2.80970  3.29505     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     12   2.95587  3.59990  0.11584  3.50584     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     13   2.95587  3.59990  0.11584  3.50584     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     14   3.10072  2.60284  3.14841  0.17674     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     15   0.14032  3.39225  2.80970  3.29505     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     16   2.95587  3.59990  0.11584  3.50584     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     17   3.44691  0.12857  3.49579  2.83904     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     18   2.41326  0.87609  2.48559  0.88966     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     19   2.95587  3.59990  0.11584  3.50584     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     20   3.10072  2.60284  3.14841  0.17674     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     21   0.14032  3.39225  2.80970  3.29505     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     22   2.95587  3.59990  0.11584  3.50584     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     23   2.95587  3.59990  0.11584  3.50584     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     24   3.10072  2.60284  3.14841  0.17674     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     25   2.95587  3.59990  0.11584  3.50584     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     26   0.14032  3.39225  2.80970  3.29505     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     27   0.14032  3.39225  2.80970  3.29505     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     28   3.44691  0.12857  3.49579  2.83904     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     29   3.44691  0.12857  3.49579  2.83904     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     30   3.10072  2.60284  3.14841  0.17674     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     31   3.10072  2.60284  3.14841  0.17674     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     32   3.44691  0.12857  3.49579  2.83904     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     33   2.95587  3.59990  0.11584  3.50584     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     34   2.95587  3.59990  0.11584  3.50584     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     35   3.44691  0.12857  3.49579  2.83904     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     36   3.02168  2.41083  3.07214  0.20430     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     37   2.95587  3.59990  0.11584  3.50584     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     38   2.95587  3.59990  0.11584  3.50584     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     39   0.14032  3.39225  2.80970  3.29505     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     40   3.10072  2.60284  3.14841  0.17674     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     41   3.44691  0.12857  3.49579  2.83904     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     42   0.14032  3.39225  2.80970  3.29505     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     43   3.10072  2.60284  3.14841  0.17674     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     44   3.10072  2.60284  3.14841  0.17674     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03663  4.01825  4.01825  1.46634  0.26236  1.09861  0.40547
     45   0.14032  3.39225  2.80970  3.29505     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01848  4.00010        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Metazoa_1_SSU_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Sun Feb 19 01:26:41 2012
NSEQ  24
EFFN  3.424805
CKSUM 2794101933
STATS LOCAL MSV       -7.4074  0.71933
STATS LOCAL VITERBI   -7.5219  0.71933
STATS LOCAL FORWARD   -4.3767  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32087  1.61279  1.23841  1.41090
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  0.00000        *
      1   0.13772  3.41241  2.82276  3.31713      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      2   2.96982  3.62027  0.11366  3.52834      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      3   3.12118  2.61584  3.16808  0.17352      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      4   3.47011  0.12588  3.51799  2.85586      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      5   2.96982  3.62027  0.11366  3.52834      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      6   3.12118  2.61584  3.16808  0.17352      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      7   0.13772  3.41241  2.82276  3.31713      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      8   0.13772  3.41241  2.82276  3.31713      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
      9   3.47011  0.12588  3.51799  2.85586      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     10   0.13772  3.41241  2.82276  3.31713     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     11   0.13772  3.41241  2.82276  3.31713     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     12   2.96982  3.62027  0.11366  3.52834     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     13   2.96982  3.62027  0.11366  3.52834     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     14   3.12118  2.61584  3.16808  0.17352     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     15   0.13772  3.41241  2.82276  3.31713     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     16   2.96982  3.62027  0.11366  3.52834     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     17   3.47011  0.12588  3.51799  2.85586     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     18   3.12118  2.61584  3.16808  0.17352     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     19   2.96982  3.62027  0.11366  3.52834     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     20   3.12118  2.61584  3.16808  0.17352     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     21   0.13772  3.41241  2.82276  3.31713     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     22   2.96982  3.62027  0.11366  3.52834     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     23   2.96982  3.62027  0.11366  3.52834     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     24   3.12118  2.61584  3.16808  0.17352     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     25   2.96982  3.62027  0.11366  3.52834     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     26   0.13772  3.41241  2.82276  3.31713     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     27   0.13772  3.41241  2.82276  3.31713     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     28   3.47011  0.12588  3.51799  2.85586     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     29   3.47011  0.12588  3.51799  2.85586     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     30   3.12118  2.61584  3.16808  0.17352     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     31   2.96982  3.62027  0.11366  3.52834     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     32   3.47011  0.12588  3.51799  2.85586     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     33   2.13519  2.26919  2.09248  0.42312     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     34   2.96982  3.62027  0.11366  3.52834     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     35   3.47011  0.12588  3.51799  2.85586     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     36   2.10812  1.99792  2.53146  0.41042     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     37   2.96982  3.62027  0.11366  3.52834     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     38   2.96982  3.62027  0.11366  3.52834     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     39   0.13772  3.41241  2.82276  3.31713     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     40   3.12118  2.61584  3.16808  0.17352     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     41   3.47011  0.12588  3.51799  2.85586     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     42   0.13772  3.41241  2.82276  3.31713     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     43   2.97957  2.28186  3.03175  0.22457     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     44   3.12118  2.61584  3.16808  0.17352     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03620  4.02977  4.02977  1.46634  0.26236  1.09861  0.40547
     45   0.13772  3.41241  2.82276  3.31713     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01827  4.01183        *  1.46634  0.26236  0.00000        *
//