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diff snpEff_2_1a/snpEff_2_1a/scripts/filterOutBoringPredictions.sh @ 3:c052639fa666 default tip

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author pcingola
date Fri, 20 Apr 2012 11:22:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpEff_2_1a/snpEff_2_1a/scripts/filterOutBoringPredictions.sh	Fri Apr 20 11:22:59 2012 -0400
@@ -0,0 +1,11 @@
+#!/bin/sh
+
+# Remove some (boring) predictions
+grep -v DOWNSTREAM \
+	| grep -v UPSTREAM \
+	| grep -v INTRON \
+	| grep -v UTR_5_PRIME \
+	| grep -v UTR_3_PRIME \
+	| grep -v INTERGENIC \
+	| grep -v "	SYNONYMOUS_CODING" \
+	| grep -v WITHIN_NON_CODING_GENE