Mercurial > repos > pcingola > snpeff

annotate snpEff_2_1a/snpEff_2_1a/scripts/filterOutBoringPredictions.sh @ 3:c052639fa666 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author pcingola
date Fri, 20 Apr 2012 11:22:59 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
c052639fa666 Uploaded
pcingola
parents:
diff changeset
1 #!/bin/sh
c052639fa666 Uploaded
pcingola
parents:
diff changeset
2
c052639fa666 Uploaded
pcingola
parents:
diff changeset
3 # Remove some (boring) predictions
c052639fa666 Uploaded
pcingola
parents:
diff changeset
4 grep -v DOWNSTREAM \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
5 | grep -v UPSTREAM \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
6 | grep -v INTRON \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
7 | grep -v UTR_5_PRIME \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
8 | grep -v UTR_3_PRIME \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
9 | grep -v INTERGENIC \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
10 | grep -v " SYNONYMOUS_CODING" \
c052639fa666 Uploaded
pcingola
parents:
diff changeset
11 | grep -v WITHIN_NON_CODING_GENE