Mercurial > repos > petr-novak > dante
annotate summarize_gff.xml @ 26:02c6dff8c381 draft
planemo upload commit 202571c71948c191243774cbc5547b3e405b8132-dirty
| author | petr-novak |
|---|---|
| date | Tue, 31 Jan 2023 15:58:34 +0000 |
| parents | df99812ded92 |
| children | 064d80d1fa28 |
| rev | line source |
|---|---|
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02c6dff8c381
planemo upload commit 202571c71948c191243774cbc5547b3e405b8132-dirty
petr-novak
parents:
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changeset
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1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.7" python_template_version="3.5"> |
| 10 | 2 <requirements> |
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02c6dff8c381
planemo upload commit 202571c71948c191243774cbc5547b3e405b8132-dirty
petr-novak
parents:
24
diff
changeset
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3 <requirement type="package">dante=0.1.7</requirement> |
| 10 | 4 </requirements> |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
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"planemo upload commit baf4ca09569b1b709c37f2df712e778da05edaf9-dirty"
petr-novak
parents:
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6 summarize_gff.R '$inputgff' '$output' '$group' |
| 10 | 7 ]]></command> |
| 8 <inputs> | |
| 9 <param type="data" name="inputgff" format="gff3" /> | |
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"planemo upload commit baf4ca09569b1b709c37f2df712e778da05edaf9-dirty"
petr-novak
parents:
12
diff
changeset
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10 <param name="group" type="select" label="select categories to summarize" multiple="false" optional="false"> |
| 12 | 11 <option value="Name">protein domain name</option> |
| 12 <option value="Final_Classification">Classification</option> | |
| 13 <option value="seqid">Sequence ID</option> | |
| 10 | 14 </param> |
| 15 </inputs> | |
| 16 <outputs> | |
| 12 | 17 <data name="output" format="tabular" /> |
| 10 | 18 </outputs> |
| 19 <help><![CDATA[ | |
| 20 TODO: Fill in help. | |
| 21 ]]></help> | |
| 22 </tool> |