Mercurial > repos > petr-novak > dante

annotate dom_prot_seq.fa @ 9:ed4d9ede9cb4 draft

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author petr-novak
date Wed, 03 Jul 2019 09:21:52 -0400
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9
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1 >scaffold146.1|size86774:976-1289 RH Class_I|LTR|Ty1/copia|Bianca
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2 ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESIIMXXXXXXXXXXXXXXXXXX
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3 QLKE*YIKCDRTKHISPKFFFTQDLQKNGDVIIQQIRSNDNVVD
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4 >scaffold146.1|size86774:6810-7049 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand
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5 LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTR
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6 SEMVEFIIVDMDLAYNAILG
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7 >scaffold146.1|size86774:8801-9241 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat
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8 DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTED
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9 GVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCF
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10 EVCRTHRLKLNPAKCCFGVRSGKFLGY
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11 >scaffold146.1|size86774:10819-11667 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand
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12 RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVA
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13 VEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYG
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14 IQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGE
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15 TPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQ
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16 RALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY
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17 >scaffold146.1|size86774:14592-14828 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
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18 MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPAD
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19 FYVLKMGKAENNDCPLLLG
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20 >scaffold146.1|size86774:15420-15995 RT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
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21 IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFP
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22 LPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNA
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23 PATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKC
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24 HFMVRQGIVLGH
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25 >scaffold146.1|size86774:16188-16634 RH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
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26 FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYA
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27 SKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLI
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28 RWILLLQEFDLEIKDRAGTENAVADNLSR
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29 >scaffold146.1|size86774:24873-25481 INT Class_I|LTR|Ty1/copia|Bianca
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30 HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERIT
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31 FLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHF
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32 PDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPL
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33 LMKSKLPVTCWGHAIIHASSLIR
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34 >scaffold146.1|size86774:26322-27032 RT Class_I|LTR|Ty1/copia|Bianca
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35 WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFS
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36 QRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGF
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37 HMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFE
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38 NEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF
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39 >scaffold146.1|size86774:27723-28124 RH Class_I|LTR|Ty1/copia|Bianca
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40 DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRS
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41 MIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGE
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42 VIIQQIRSSDNVAD
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43 >scaffold146.1|size86774:10299-10658 aRH Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat
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44 WNMYIDGSTQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVT
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45 RLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA
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46 >scaffold146.1|size86774:16812-17666 INT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
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47 HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYIL
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48 ANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTR
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49 YGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVV
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50 NKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEE
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51 GGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF
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52 >scaffold146.1|size86774:19976-20212 PROT Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila
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53 MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPAD
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54 FYVLKMGEAENDDCPLLLG
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55 >scaffold146.1|size86774:28912-29124 PROT Class_I|LTR|Ty1/copia|Bianca
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56 CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDAL
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57 YANKSRRNLLS