annotate summarize_gff.xml @ 29:8f2bd3cae2de draft default tip

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author petr-novak
date Wed, 21 Jun 2023 08:50:27 +0000
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1 <tool id="gff_summary" name="Summarize gff3 output from DANTE" version="1.1.8" python_template_version="3.5">
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2 <requirements>
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3 <requirement type="package">dante=0.1.8</requirement>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 summarize_gff.R '$inputgff' '$output' '$group'
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7 ]]></command>
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8 <inputs>
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9 <param type="data" name="inputgff" format="gff3" />
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10 <param name="group" type="select" label="select categories to summarize" multiple="false" optional="false">
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11 <option value="Name">protein domain name</option>
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12 <option value="Final_Classification">Classification</option>
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13 <option value="seqid">Sequence ID</option>
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14 </param>
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="tabular" />
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18 </outputs>
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19 <help><![CDATA[
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20 TODO: Fill in help.
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21 ]]></help>
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22 </tool>