--- a/summarize_gff.xml	Fri Apr 03 07:27:59 2020 -0400
+++ b/summarize_gff.xml	Wed Jan 25 13:06:55 2023 +0000
@@ -1,13 +1,13 @@
-<tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.0" python_template_version="3.5">
+<tool id="gff_summary" name="Summarize gff3 output from DANTE" version="0.1.4" python_template_version="3.5">
     <requirements>
-        <requirement type="package">R</requirement>
+        <requirement type="package">dante=0.1.4</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output' '$group'
+        summarize_gff.R '$inputgff' '$output' '$group'
     ]]></command>
     <inputs>
       <param type="data" name="inputgff" format="gff3" />
-      <param name="group" type="select" label="select categories to summarize" multiple="true" optional="false">
+      <param name="group" type="select" label="select categories to summarize" multiple="false" optional="false">
             <option value="Name">protein domain name</option>
             <option value="Final_Classification">Classification</option>
             <option value="seqid">Sequence ID</option>