Mercurial > repos > petr-novak > repeatrxplorer

annotate databases/0INFO.md @ 0:1d1b9e1b2e2f draft

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author petr-novak
date Thu, 19 Dec 2019 10:24:45 -0500
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1 # DATABASE FOLDER CONTENT #
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2
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3 This folder contain fasta files sequence databases used for cluster annotation.
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4 To run clustering, blast databases must be created from fasta files. This will be done automaticaly when make is run.
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5 folder content:
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6 dna_database.fasta - mitochondrial, plastid, rDNA genes, contaminants
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7 protein_database.fasta - protein domains from transposable elements
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8 tRNA_database.fasta - fragments from tRNA sequences for identification of Primer Binding Sites of transposable elements
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