Mercurial > repos > petr-novak > various_galaxy_tools

annotate gff2tabular.R @ 0:696e702ebf74 draft

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"planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
author petr-novak
date Mon, 09 May 2022 08:26:30 +0000
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children 639c0edb7e64
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696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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1 #!/usr/bin/env Rscript
696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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2 library(rtracklayer)
696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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3 gff <- import(commandArgs(T)[1], format='GFF')
696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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4 tabular <- as.data.frame(gff)
696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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5 write.table(tabular, file = commandArgs(T)[2], quote=FALSE, sep="\t", row.names=FALSE)
696e702ebf74 "planemo upload commit 0f6eca49bafc3c946189d793161a7f81d595e1a1-dirty"
petr-novak
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6