Mercurial > repos > pieterlukasse > prims_masscomb

annotate tool_dependencies.xml @ 13:c91d0d09cb0c default tip

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fix in URL
author pieter.lukasse@wur.nl
date Wed, 18 Feb 2015 14:24:50 +0100
parents 1a6fa343b981
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help -->
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4 <package name="xtandem" version="12.10011">
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5 <install version="1.0">
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6 <actions>
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7 <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2012-10-01/tandem-linux-12-10-01-1.zip</action>
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8 <!--<action type="shell_command">make clean</action>
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9 <action type="shell_command">make</action>-->
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10 <action type="move_directory_files">
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11 <source_directory>../tandem-linux-12-10-01-1</source_directory>
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12 <destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory>
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13 </action>
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14 <action type="shell_command">chmod 755 $INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</action>
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15 <!--<action type="chmod"><file mode="755">$INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</file><action>-->
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16 <action type="set_environment">
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17 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Ensures XTandem is installed.
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23 </readme>
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24 </package>
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25 <package name="proteowizard" version="3.05622">
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26 <install version="1.0">
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27 <actions>
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28 <action type="download_by_url">http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/raw-file/tip/pwiz-bin-linux-x86_64-gcc48-release-3_0_5622.tar.bz2</action>
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29 <action type="move_directory_files">
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30 <source_directory>.</source_directory>
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31 <destination_directory>$INSTALL_DIR/pwiz_3_0_5622</destination_directory>
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable>
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35 </action>
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36 </actions>
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37 </install>
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38 <readme>
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39 Ensures ProteoWizard binaries are installed.
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40 </readme>
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41 </package>
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42 <set_environment version="1.0">
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43 <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable>
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44 </set_environment>
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45 </tool_dependency>