Mercurial > repos > pieterlukasse > prims_metabolomics_r_dependencies

annotate INSTALL.r @ 0:d57322d79cfe

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author pieter.lukasse@wur.nl
date Thu, 06 Nov 2014 16:04:57 +0100
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1 # get R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz
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3 # installs Bioconductor
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4 source("http://bioconductor.org/biocLite.R")
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5 biocLite()
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7 # upgrage? Some packages are "old" and can be upgraded with: biocLite("BiocUpgrade")
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10 # install metaMS and multtest for differential analysis tool (from xcms)
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11 biocLite("metaMS")
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12 biocLite("multtest")
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14 # for "multi-threading" (actually starts multiple R processes for parallel processing):
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15 install.packages("snow", repos="http://cran.rstudio.com/")
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