Mercurial > repos > pieterlukasse > prims_metabolomics_r_dependencies
comparison INSTALL.r @ 0:d57322d79cfe
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| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 06 Nov 2014 16:04:57 +0100 |
| parents | |
| children | e6171a39dd04 |
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| -1:000000000000 | 0:d57322d79cfe |
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| 1 # get R http://cran.r-project.org/src/base/R-3/R-3.0.3.tar.gz | |
| 2 | |
| 3 # installs Bioconductor | |
| 4 source("http://bioconductor.org/biocLite.R") | |
| 5 biocLite() | |
| 6 | |
| 7 # upgrage? Some packages are "old" and can be upgraded with: biocLite("BiocUpgrade") | |
| 8 | |
| 9 | |
| 10 # install metaMS and multtest for differential analysis tool (from xcms) | |
| 11 biocLite("metaMS") | |
| 12 biocLite("multtest") | |
| 13 | |
| 14 # for "multi-threading" (actually starts multiple R processes for parallel processing): | |
| 15 install.packages("snow", repos="http://cran.rstudio.com/") | |
| 16 |