Mercurial > repos > pieterlukasse > prims_proteomics

changeset 18:ad911e9aaf33

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small fix in msfilt report output
author pieter.lukasse@wur.nl
date Fri, 01 Aug 2014 17:22:37 +0200
parents 40ec8770780d
children d31c6978d9d0
files MsFilt.jar msfilt.xml
diffstat 2 files changed, 11 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
Binary file MsFilt.jar has changed
--- a/msfilt.xml	Mon Apr 14 17:11:33 2014 +0200
+++ b/msfilt.xml	Fri Aug 01 17:22:37 2014 +0200
@@ -221,6 +221,17 @@
 The output report shows some plots that visualize the filtering done. This can help in fine-tuning the right filtering
 criteria.
 
+
+*Filter criteria examples for filtering identifications*
+
+================================== ===========================================================================
+Data type                          Example filter criteria
+---------------------------------- ---------------------------------------------------------------------------
+QExactive/ProteomeDiscoverer data  * (qmBSCR<-1.0) or (!isNaN(smPercoProb) and 18-20*smPercoProb>qmBSCR)
+X!Tandem identifications data      * (qmDMP <-0.5 and qmBSCR<-0.5) or (!isNaN(smXTD) and smXTD>0.01)
+================================== ===========================================================================
+
+
 -----
 
 **Output details**