Mercurial > repos > pjbriggs > macs21
diff test-data/test_MACS2.1.1_peaks.xls @ 3:4124781932db draft
Updated to MACS 2.1.1 and use conda for dependency resolution.
author | pjbriggs |
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date | Tue, 20 Mar 2018 11:25:04 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_MACS2.1.1_peaks.xls Tue Mar 20 11:25:04 2018 -0400 @@ -0,0 +1,30 @@ +#peaks file +# This file is generated by MACS version 2.1.1.20160309 +# Command line: callpeak -t /tmp/tmpHxmla3/files/000/dataset_9.dat -c /tmp/tmpHxmla3/files/000/dataset_10.dat --format=BED --name=test_MACS2.1.1 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1 +# ARGUMENTS LIST: +# name = test_MACS2.1.1 +# format = BED +# ChIP-seq file = ['/tmp/tmpHxmla3/files/000/dataset_9.dat'] +# control file = ['/tmp/tmpHxmla3/files/000/dataset_10.dat'] +# effective genome size = 7.75e+08 +# band width = 300 +# model fold = [5, 50] +# qvalue cutoff = 5.00e-02 +# Larger dataset will be scaled towards smaller dataset. +# Range for calculating regional lambda is: 1000 bps and 10000 bps +# Broad region calling is off +# Paired-End mode is off +# MACS will save fragment pileup signal per million reads + +# tag size is determined as 50 bps +# total tags in treatment: 50 +# tags after filtering in treatment: 50 +# maximum duplicate tags at the same position in treatment = 1 +# Redundant rate in treatment: 0.00 +# total tags in control: 50 +# tags after filtering in control: 50 +# maximum duplicate tags at the same position in control = 1 +# Redundant rate in control: 0.00 +# d = 243 +#chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name +chr26 4118914 4119282 369 4119130 9.00 9.13132 6.31632 2.51561 test_MACS2.1.1_peak_1