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annotate test-data/illuminaPE_microsats.out @ 6:a73c48890bde draft

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Version v0.02.04.5: handle large output files
author pjbriggs
date Tue, 06 Jun 2017 08:54:49 -0400
parents b6ccc7dd7b02
children
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3f908e7fff4f Uploaded first version to toolshed.
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1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
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b6ccc7dd7b02 Version 0.02.04.3.
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2 ILLUMINA-545855:49:FC61RLR:2:1:10979:1695 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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3 ILLUMINA-545855:49:FC61RLR:2:1:17449:1584 AC(36) 36 0
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4 ILLUMINA-545855:49:FC61RLR:2:1:19063:1614 AT(14) AT(14) AT(14) AT(14) 56 0
b6ccc7dd7b02 Version 0.02.04.3.
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5 ILLUMINA-545855:49:FC61RLR:2:1:1978:1220 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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6 ILLUMINA-545855:49:FC61RLR:2:1:5626:1554 AT(14) AC(16) AC(16) AT(12) 58 0
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7 ILLUMINA-545855:49:FC61RLR:2:1:5879:1238 AT(12) 12 0
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8 ILLUMINA-545855:49:FC61RLR:2:1:6204:1090 TC(12) 12 0
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9 ILLUMINA-545855:49:FC61RLR:2:1:8044:1926 AT(12) 12 0
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10 ILLUMINA-545855:49:FC61RLR:2:1:8157:1636 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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11 ILLUMINA-545855:49:FC61RLR:2:1:8899:1514 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1