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annotate test-data/illuminaPE_microsats.out @ 2:b6ccc7dd7b02 draft

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Version 0.02.04.3.
author pjbriggs
date Fri, 04 Dec 2015 07:43:30 -0500
parents 3f908e7fff4f
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3f908e7fff4f Uploaded first version to toolshed.
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1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
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b6ccc7dd7b02 Version 0.02.04.3.
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2 ILLUMINA-545855:49:FC61RLR:2:1:10979:1695 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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3 ILLUMINA-545855:49:FC61RLR:2:1:17449:1584 AC(36) 36 0
b6ccc7dd7b02 Version 0.02.04.3.
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4 ILLUMINA-545855:49:FC61RLR:2:1:19063:1614 AT(14) AT(14) AT(14) AT(14) 56 0
b6ccc7dd7b02 Version 0.02.04.3.
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5 ILLUMINA-545855:49:FC61RLR:2:1:1978:1220 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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6 ILLUMINA-545855:49:FC61RLR:2:1:5626:1554 AT(14) AC(16) AC(16) AT(12) 58 0
b6ccc7dd7b02 Version 0.02.04.3.
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7 ILLUMINA-545855:49:FC61RLR:2:1:5879:1238 AT(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
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8 ILLUMINA-545855:49:FC61RLR:2:1:6204:1090 TC(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
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9 ILLUMINA-545855:49:FC61RLR:2:1:8044:1926 AT(12) 12 0
b6ccc7dd7b02 Version 0.02.04.3.
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10 ILLUMINA-545855:49:FC61RLR:2:1:8157:1636 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
b6ccc7dd7b02 Version 0.02.04.3.
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11 ILLUMINA-545855:49:FC61RLR:2:1:8899:1514 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1