Mercurial > repos > pjbriggs > weeder2

comparison tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated to tool version 2.0.1 (use data table to locate freqfiles).
author pjbriggs
date Fri, 27 Nov 2015 11:06:28 -0500
parents
children
comparison
equal deleted inserted replaced
1:571cb77ab9e7 2:3c5f10f7dd40
1 # This is a sample file distributed with Galaxy that is used by the
2 # weeder2 tool to find the frequency files.
3 #
4 # The weeder.loc file has this format (white space characters are TAB
5 # characters):
6 #
7 #<species_code> <Description> <PathToFreqFilesDir>
8 #
9 # <PathToFreqFilesDir> should be a period ('.') to indicate the
10 # frequency files that come as standard with weeder2; otherwise
11 # it should be the full path to the directory holding a custom
12 # set of .freq files.
13 #
14 # For example:
15 #
16 #AF Aspergillus fumigatus (AF) /home/galaxy/weeder/FreqFiles
17 #
18 # where '/home/galaxy/weeder/FreqFiles' would contain:
19 #
20 #-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq
21 #-rw-rw-r-- 1 pjb pjb 47080 Oct 23 13:15 AF_ds.6.freq
22 #-rw-rw-r-- 1 pjb pjb 1006374 Oct 23 13:15 AF_ds.8.freq
23 #-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq
24 #-rw-rw-r-- 1 pjb pjb 45262 Oct 23 13:16 AF_ss.6.freq
25 #-rw-rw-r-- 1 pjb pjb 984583 Oct 23 13:16 AF_ss.8.freq
26 #
27 # Entries are already provided for the standard frequency files that
28 # are distributed with Weeder2.
29 # This file should be placed in galaxy's tool-data directory when the
30 # weeder2 tool is installed.
31 HS Homo sapiens (HS) .
32 MM Mus musculus (MM) .
33 DM Drosophila melanogaster (DM) .
34 SC Saccharomyces cerevisiae (SC) .
35 AT Arabidopsis thaliana (AT) .