view tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft

Updated to tool version 2.0.1 (use data table to locate freqfiles).
author pjbriggs
date Fri, 27 Nov 2015 11:06:28 -0500
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# This is a sample file distributed with Galaxy that is used by the
# weeder2 tool to find the frequency files.
#
# The weeder.loc file has this format (white space characters are TAB
# characters):
#
#<species_code>	<Description>	<PathToFreqFilesDir>
#
# <PathToFreqFilesDir> should be a period ('.') to indicate the
# frequency files that come as standard with weeder2; otherwise
# it should be the full path to the directory holding a custom
# set of .freq files.
#
# For example:
#
#AF	Aspergillus fumigatus (AF)	/home/galaxy/weeder/FreqFiles
#
# where '/home/galaxy/weeder/FreqFiles' would contain:
#
#-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq
#-rw-rw-r-- 1 pjb pjb    47080 Oct 23 13:15 AF_ds.6.freq
#-rw-rw-r-- 1 pjb pjb  1006374 Oct 23 13:15 AF_ds.8.freq
#-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq
#-rw-rw-r-- 1 pjb pjb    45262 Oct 23 13:16 AF_ss.6.freq
#-rw-rw-r-- 1 pjb pjb   984583 Oct 23 13:16 AF_ss.8.freq
#
# Entries are already provided for the standard frequency files that
# are distributed with Weeder2.
# This file should be placed in galaxy's tool-data directory when the
# weeder2 tool is installed.
HS	Homo sapiens (HS)	.
MM	Mus musculus (MM)	.
DM	Drosophila melanogaster (DM)	.
SC	Saccharomyces cerevisiae (SC)	.
AT	Arabidopsis thaliana (AT)	.