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annotate tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft

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Updated to tool version 2.0.1 (use data table to locate freqfiles).
author pjbriggs
date Fri, 27 Nov 2015 11:06:28 -0500
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3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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1 # This is a sample file distributed with Galaxy that is used by the
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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2 # weeder2 tool to find the frequency files.
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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3 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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4 # The weeder.loc file has this format (white space characters are TAB
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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5 # characters):
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6 #
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7 #<species_code> <Description> <PathToFreqFilesDir>
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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8 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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9 # <PathToFreqFilesDir> should be a period ('.') to indicate the
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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10 # frequency files that come as standard with weeder2; otherwise
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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11 # it should be the full path to the directory holding a custom
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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12 # set of .freq files.
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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13 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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14 # For example:
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15 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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16 #AF Aspergillus fumigatus (AF) /home/galaxy/weeder/FreqFiles
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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17 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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18 # where '/home/galaxy/weeder/FreqFiles' would contain:
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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19 #
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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20 #-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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21 #-rw-rw-r-- 1 pjb pjb 47080 Oct 23 13:15 AF_ds.6.freq
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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22 #-rw-rw-r-- 1 pjb pjb 1006374 Oct 23 13:15 AF_ds.8.freq
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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23 #-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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24 #-rw-rw-r-- 1 pjb pjb 45262 Oct 23 13:16 AF_ss.6.freq
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25 #-rw-rw-r-- 1 pjb pjb 984583 Oct 23 13:16 AF_ss.8.freq
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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26 #
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27 # Entries are already provided for the standard frequency files that
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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28 # are distributed with Weeder2.
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29 # This file should be placed in galaxy's tool-data directory when the
3c5f10f7dd40 Updated to tool version 2.0.1 (use data table to locate freqfiles).
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30 # weeder2 tool is installed.
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31 HS Homo sapiens (HS) .
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32 MM Mus musculus (MM) .
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33 DM Drosophila melanogaster (DM) .
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34 SC Saccharomyces cerevisiae (SC) .
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35 AT Arabidopsis thaliana (AT) .