<tool id="computeMatSimilarity" name="computeMatSimilarity" version="1.0" profile="16.04" workflow_compatible="true">

    <description>performs the computation of the similarities. The similarity between two variables is an approximation of the correlation between these two variables.</description>

    <requirements>
        <requirement type="package" version="6.12">bioconductor-mixomics</requirement> <!-- Remove when viscorvar is available via conda -->
        <requirement type="package" version="2.0">r-argparse</requirement>
    </requirements>

    <stdio>
        <!-- <exit_code range="1:" level="fatal" /> -->
    </stdio>

    <command detect_errors="aggressive">
        <![CDATA[
        Rscript
        ${__tool_directory__}/computeMatSimilarity_wrapper.R
        --input_rdata ${input_rdata}
        --output_rdata ${output_rdata}
        ]]>
    </command>

    <inputs>
        <param name="input_rdata" type="data" format="rdata"
               label="Input RData file"
               help="output RData file from matCorAddVar"/>
    </inputs>

    <outputs>
        <data name="output_rdata" format="rdata" label="${tool.name}_output.rdata" />
    </outputs>

    <tests>
    </tests>

    <help>
    </help>

</tool>