Mercurial > repos > public-health-bioinformatics > adjust_bracken_for_unclassified_reads
diff test-data/input/SRR17907745_bracken_abundances.tsv @ 0:3ab9d37e547e draft
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/adjust_bracken_for_unclassified_reads commit 0d1d1f356cdfd8ef6dbcdd1bfe76c4637587ff53"
| author | public-health-bioinformatics |
|---|---|
| date | Thu, 10 Mar 2022 21:35:14 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input/SRR17907745_bracken_abundances.tsv Thu Mar 10 21:35:14 2022 +0000 @@ -0,0 +1,431 @@ +name taxonomy_id taxonomy_lvl kraken_assigned_reads added_reads new_est_reads fraction_total_reads +Klebsiella quasipneumoniae 1463165 S 484958 532071 1017029 0.41339 +Klebsiella pneumoniae 573 S 94362 221351 315713 0.12833 +Klebsiella variicola 244366 S 4879 5873 10752 0.00437 +Klebsiella aerogenes 548 S 3374 195 3569 0.00145 +Klebsiella oxytoca 571 S 3014 761 3775 0.00153 +Klebsiella quasivariicola 2026240 S 2408 500 2908 0.00118 +Klebsiella michiganensis 1134687 S 2076 3583 5659 0.00230 +Klebsiella sp. LY 2015795 S 544 3025 3569 0.00145 +Klebsiella sp. STW0522-44 2681387 S 442 128 570 0.00023 +Klebsiella sp. BDA134-6 2787706 S 168 172 340 0.00014 +Klebsiella sp. P1CD1 2267618 S 127 538 665 0.00027 +Klebsiella sp. WP3-W18-ESBL-02 2675710 S 56 236 292 0.00012 +Klebsiella sp. LTGPAF-6F 1905288 S 40 419 459 0.00019 +Klebsiella sp. WP8-S18-ESBL-06 2675726 S 37 26 63 0.00003 +Klebsiella sp. WP4-W18-ESBL-05 2675713 S 19 68 87 0.00004 +Klebsiella sp. FDAARGOS_511 2488567 S 12 99 111 0.00005 +Klebsiella sp. MPUS7 2697371 S 4 18 22 0.00001 +Klebsiella sp. WP3-S18-ESBL-05 2675711 S 2 13 15 0.00001 +Klebsiella sp. RHBSTW-00484 2742651 S 1 508 509 0.00021 +Klebsiella africana 2489010 S 1835 234 2069 0.00084 +Klebsiella grimontii 2058152 S 1287 3493 4780 0.00194 +Klebsiella huaxiensis 2153354 S 542 31 573 0.00023 +Escherichia coli 562 S 181539 569690 751229 0.30535 +Escherichia fergusonii 564 S 487 31 518 0.00021 +Escherichia albertii 208962 S 12 2 14 0.00001 +Escherichia marmotae 1499973 S 8 0 8 0.00000 +Escherichia sp. E4742 2044467 S 2 0 2 0.00000 +Escherichia sp. SCLE84 2725997 S 1 10 11 0.00000 +Enterobacter hormaechei 158836 S 74706 10304 85010 0.03455 +Enterobacter cloacae 550 S 73130 5994 79124 0.03216 +Enterobacter roggenkampii 1812935 S 325 40 365 0.00015 +Enterobacter asburiae 61645 S 83 7 90 0.00004 +Enterobacter kobei 208224 S 53 9 62 0.00003 +Enterobacter cloacae complex sp. 2027919 S 10 10 20 0.00001 +Enterobacter cloacae complex sp. FDA-CDC-AR_0164 2077136 S 1 2 3 0.00000 +Enterobacter cancerogenus 69218 S 4 0 4 0.00000 +Enterobacter ludwigii 299767 S 4 0 4 0.00000 +Enterobacter chengduensis 2494701 S 4 0 4 0.00000 +Enterobacter sp. E76 2596949 S 202 11 213 0.00009 +Enterobacter sp. RFL1396 211595 S 125 0 125 0.00005 +Enterobacter sp. 18A13 2565914 S 13 1 14 0.00001 +Enterobacter sp. R4-368 1166130 S 11 2 13 0.00001 +Enterobacter sp. SA187 1914861 S 11 0 11 0.00000 +Enterobacter sp. JUb54 2724468 S 7 0 7 0.00000 +Enterobacter sp. RHBSTW-00994 2742676 S 4 0 4 0.00000 +Enterobacter sp. N18-03635 2500132 S 4 0 4 0.00000 +Enterobacter sp. 638 399742 S 3 0 3 0.00000 +Enterobacter sp. RHB15-C17 2742619 S 3 0 3 0.00000 +Enterobacter sp. RHBSTW-00175 2742639 S 3 0 3 0.00000 +Enterobacter sp. HK169 1868135 S 1 0 1 0.00000 +Enterobacter sp. RHBSTW-00593 2742656 S 1 0 1 0.00000 +Enterobacter sp. SES19 2705458 S 1 0 1 0.00000 +Enterobacter mori 539813 S 67 10 77 0.00003 +Enterobacter bugandensis 881260 S 7 0 7 0.00000 +Enterobacter soli 885040 S 4 0 4 0.00000 +Enterobacter oligotrophicus 2478464 S 1 0 1 0.00000 +Citrobacter freundii 546 S 116592 16368 132960 0.05404 +Citrobacter portucalensis 1639133 S 118 22 140 0.00006 +Citrobacter freundii complex sp. CFNIH2 2066049 S 1 0 1 0.00000 +Citrobacter freundii complex sp. CFNIH3 2077147 S 1 3 4 0.00000 +Citrobacter sp. ABFQG 2529121 S 1 6 7 0.00000 +Citrobacter braakii 57706 S 2 0 2 0.00000 +Citrobacter youngae 133448 S 2 0 2 0.00000 +Citrobacter werkmanii 67827 S 1 0 1 0.00000 +Citrobacter sp. RHBSTW-00053 2742632 S 448 1661 2109 0.00086 +Citrobacter sp. RHBSTW-00848 2742665 S 253 4569 4822 0.00196 +Citrobacter sp. RHBSTW-00678 2742661 S 248 922 1170 0.00048 +Citrobacter sp. RHBSTW-00137 2742638 S 207 2344 2551 0.00104 +Citrobacter sp. RHBSTW-00107 2742635 S 57 4270 4327 0.00176 +Citrobacter sp. RHBSTW-00821 2742663 S 44 248 292 0.00012 +Citrobacter sp. LY-1 2546350 S 21 0 21 0.00001 +Citrobacter sp. RHBSTW-01013 2742677 S 16 14 30 0.00001 +Citrobacter sp. R56 1573676 S 6 0 6 0.00000 +Citrobacter sp. CRE-46 1703250 S 4 1 5 0.00000 +Citrobacter sp. 36-4CPA 1036018 S 2 0 2 0.00000 +Citrobacter sp. RHBSTW-00944 2742671 S 2 1 3 0.00000 +Citrobacter sp. RHBSTW-00881 2742667 S 2 0 2 0.00000 +Citrobacter sp. Y3 2716879 S 2 1 3 0.00000 +Citrobacter sp. 172116965 2683822 S 2 0 2 0.00000 +Citrobacter sp. RHBSTW-00535 2742654 S 1 3 4 0.00000 +Citrobacter sp. BDA59-3 2781952 S 1 0 1 0.00000 +Citrobacter sp. RHBSTW-00986 2742675 S 1 0 1 0.00000 +Citrobacter sp. RHBSTW-00903 2742670 S 1 3 4 0.00000 +Citrobacter sp. CFNIH10 1920110 S 1 0 1 0.00000 +Citrobacter sp. CF971 2566012 S 1 0 1 0.00000 +Citrobacter sp. RHBSTW-00524 2742653 S 1 0 1 0.00000 +Citrobacter sp. RHB35-C21 2742626 S 1 0 1 0.00000 +Citrobacter rodentium 67825 S 28 11 39 0.00002 +Citrobacter koseri 545 S 4 0 4 0.00000 +Citrobacter amalonaticus 35703 S 4 0 4 0.00000 +Citrobacter telavivum 2653932 S 3 0 3 0.00000 +Citrobacter farmeri 67824 S 1 0 1 0.00000 +Citrobacter cronae 1748967 S 1 0 1 0.00000 +Salmonella enterica 28901 S 2559 5244 7803 0.00317 +Salmonella sp. SSDFZ54 2500542 S 687 1530 2217 0.00090 +Salmonella sp. 599 S 431 4511 4942 0.00201 +Salmonella sp. SJTUF14178 2745895 S 1 20 21 0.00001 +Salmonella bongori 54736 S 4 20 24 0.00001 +Raoultella ornithinolytica 54291 S 893 198 1091 0.00044 +Raoultella electrica 1259973 S 116 15 131 0.00005 +Raoultella planticola 575 S 97 6 103 0.00004 +Raoultella terrigena 577 S 80 3 83 0.00003 +Raoultella sp. X13 2259647 S 1 0 1 0.00000 +Raoultella sp. XY-1 2799495 S 1 1 2 0.00000 +Kosakonia radicincitans 283686 S 634 19 653 0.00027 +Kosakonia sp. SMBL-WEM22 2725560 S 33 0 33 0.00001 +Kosakonia sp. CCTCC M2018092 2492396 S 2 0 2 0.00000 +Kosakonia oryzae 497725 S 23 0 23 0.00001 +Kosakonia cowanii 208223 S 2 0 2 0.00000 +Kosakonia sacchari 1158459 S 2 0 2 0.00000 +Kosakonia arachidis 551989 S 1 0 1 0.00000 +Kosakonia pseudosacchari 1646340 S 1 0 1 0.00000 +Leclercia sp. 4-9-1-25 2815358 S 181 2 183 0.00007 +Leclercia sp. W6 2282310 S 3 0 3 0.00000 +Leclercia sp. 119287 2681308 S 3 0 3 0.00000 +Leclercia sp. 29361 2714951 S 3 0 3 0.00000 +Leclercia sp. LSNIH1 1920114 S 1 0 1 0.00000 +Leclercia sp. J807 2681307 S 1 0 1 0.00000 +Leclercia adecarboxylata 83655 S 96 12 108 0.00004 +Shigella boydii 621 S 227 578 805 0.00033 +Shigella flexneri 623 S 12 55 67 0.00003 +Shigella dysenteriae 622 S 4 32 36 0.00001 +Shigella sonnei 624 S 3 156 159 0.00006 +Candidatus Riesia pediculischaeffi 428411 S 136 0 136 0.00006 +Pluralibacter gergoviae 61647 S 69 1 70 0.00003 +[Enterobacter] lignolyticus 1334193 S 6 0 6 0.00000 +Jejubacter calystegiae 2579935 S 47 0 47 0.00002 +Cronobacter sakazakii 28141 S 26 7 33 0.00001 +Cronobacter dublinensis 413497 S 3 0 3 0.00000 +Cronobacter malonaticus 413503 S 3 0 3 0.00000 +Cronobacter universalis 535744 S 3 0 3 0.00000 +Cronobacter condimenti 1163710 S 2 0 2 0.00000 +secondary endosymbiont of Ctenarytaina eucalypti 1199245 S 4 0 4 0.00000 +Candidatus Hamiltonella defensa 138072 S 3 0 3 0.00000 +secondary endosymbiont of Heteropsylla cubana 134287 S 1 0 1 0.00000 +Candidatus Doolittlea endobia 1778262 S 5 0 5 0.00000 +Candidatus Hoaglandella endobia 1778263 S 3 0 3 0.00000 +Candidatus Gullanella endobia 1070130 S 3 0 3 0.00000 +secondary endosymbiont of Trabutina mannipara 1835721 S 2 0 2 0.00000 +Candidatus Purcelliella pentastirinorum 472834 S 2 0 2 0.00000 +Cedecea neteri 158822 S 13 1 14 0.00001 +Cedecea lapagei 158823 S 6 0 6 0.00000 +Kluyvera intermedia 61648 S 7 0 7 0.00000 +Kluyvera cryocrescens 580 S 5 128 133 0.00005 +Kluyvera genomosp. 3 2774055 S 4 0 4 0.00000 +Lelliottia amnigena 61646 S 9 0 9 0.00000 +Lelliottia sp. WB101 2153385 S 4 0 4 0.00000 +Lelliottia nimipressuralis 69220 S 2 0 2 0.00000 +Metakosakonia sp. MRY16-398 2487150 S 11 6 17 0.00001 +Scandinavium goeteborgense 1851514 S 7 0 7 0.00000 +Enterobacteriaceae endosymbiont of Plateumaris pusilla 2675795 S 1 2 3 0.00000 +Enterobacteriaceae endosymbiont of Macroplea appendiculata 2675790 S 1 0 1 0.00000 +Enterobacteriaceae endosymbiont of Donacia tomentosa 2675787 S 1 0 1 0.00000 +Buttiauxella sp. 3AFRM03 2479367 S 3 1 4 0.00000 +Buttiauxella agrestis 82977 S 1 0 1 0.00000 +Shimwellia blattae 563 S 6 0 6 0.00000 +Phytobacter ursingii 1972431 S 4 0 4 0.00000 +Candidatus Moranella endobia 1048758 S 3 0 3 0.00000 +Atlantibacter hermannii 565 S 3 0 3 0.00000 +Pseudescherichia vulneris 566 S 3 0 3 0.00000 +Yokenella regensburgei 158877 S 2 0 2 0.00000 +Tatumella sp. TA1 2487345 S 163 1 164 0.00007 +Tatumella morbirosei 642227 S 4 0 4 0.00000 +Tatumella ptyseos 82987 S 2 0 2 0.00000 +Erwinia sp. Ejp617 215689 S 32 0 32 0.00001 +Erwinia amylovora 552 S 18 2 20 0.00001 +Erwinia tasmaniensis 338565 S 9 0 9 0.00000 +Erwinia pyrifoliae 79967 S 7 6 13 0.00001 +Candidatus Erwinia haradaeae 1922217 S 4 0 4 0.00000 +Erwinia persicina 55211 S 1 0 1 0.00000 +Pantoea ananatis 553 S 30 0 30 0.00001 +Pantoea stewartii 66269 S 13 0 13 0.00001 +Pantoea sp. At-9b 592316 S 2 0 2 0.00000 +Pantoea sp. MSR2 2052056 S 2 0 2 0.00000 +Pantoea sp. SO10 2575375 S 2 0 2 0.00000 +Pantoea sp. CCBC3-3-1 2490851 S 1 0 1 0.00000 +Pantoea vagans 470934 S 3 0 3 0.00000 +Pantoea agglomerans 549 S 3 0 3 0.00000 +Pantoea cypripedii 55209 S 1 0 1 0.00000 +Pantoea dispersa 59814 S 1 0 1 0.00000 +Pantoea alhagi 1891675 S 1 0 1 0.00000 +Buchnera aphidicola 9 S 3 0 3 0.00000 +Mixta intestinalis 1615494 S 2 0 2 0.00000 +Mixta theicola 1458355 S 1 0 1 0.00000 +Serratia marcescens 615 S 126 5 131 0.00005 +Serratia symbiotica 138074 S 9 0 9 0.00000 +Serratia sp. CMO1 2785630 S 3 1 4 0.00000 +Serratia sp. FS14 1327989 S 2 0 2 0.00000 +Serratia sp. Tan611 2773264 S 1 0 1 0.00000 +Serratia proteamaculans 28151 S 4 0 4 0.00000 +Serratia liquefaciens 614 S 2 0 2 0.00000 +Serratia fonticola 47917 S 2 0 2 0.00000 +Serratia rubidaea 61652 S 1 0 1 0.00000 +Serratia plymuthica 82996 S 1 0 1 0.00000 +Serratia quinivorans 137545 S 1 0 1 0.00000 +Yersinia pseudotuberculosis 633 S 17 0 17 0.00001 +Yersinia pestis 632 S 7 16 23 0.00001 +Yersinia kristensenii 28152 S 20 1 21 0.00001 +Yersinia enterocolitica 630 S 4 0 4 0.00000 +Yersinia frederiksenii 29484 S 2 2 4 0.00000 +Yersinia aleksiciae 263819 S 1 0 1 0.00000 +Yersinia massiliensis 419257 S 1 0 1 0.00000 +Yersinia hibernica 2339259 S 1 0 1 0.00000 +Rahnella sp. WMR42 657334 S 39 0 39 0.00002 +Rahnella sp. ERMR1:05 1805933 S 3 0 3 0.00000 +Rahnella aquatilis 34038 S 9 1 10 0.00000 +Rahnella aceris 2703885 S 2 0 2 0.00000 +Candidatus Fukatsuia symbiotica 1878942 S 3 0 3 0.00000 +Nissabacter sp. SGAir0207 2126321 S 2 0 2 0.00000 +Ewingella americana 41202 S 1 0 1 0.00000 +Rouxiella badensis 1646377 S 1 0 1 0.00000 +Hafnia alvei 569 S 53 0 53 0.00002 +Hafnia paralvei 546367 S 1 0 1 0.00000 +Edwardsiella piscicida 1263550 S 30 12 42 0.00002 +Edwardsiella tarda 636 S 1 0 1 0.00000 +Edwardsiella ictaluri 67780 S 1 0 1 0.00000 +Edwardsiella hoshinae 93378 S 1 0 1 0.00000 +Edwardsiella anguillarum 1821960 S 1 2 3 0.00000 +Edwardsiella sp. EA181011 1578828 S 1 0 1 0.00000 +Obesumbacterium proteus 82983 S 2 0 2 0.00000 +Proteus mirabilis 584 S 43 1 44 0.00002 +Proteus vulgaris 585 S 2 1 3 0.00000 +Providencia rettgeri 587 S 6 0 6 0.00000 +Providencia heimbachae 333962 S 4 0 4 0.00000 +Providencia sp. 1709051003 2603246 S 2 55 57 0.00002 +Providencia vermicola 333965 S 1 0 1 0.00000 +Morganella morganii 582 S 10 0 10 0.00000 +Xenorhabdus poinarii 40577 S 3 0 3 0.00000 +Xenorhabdus bovienii 40576 S 2 0 2 0.00000 +Xenorhabdus doucetiae 351671 S 2 0 2 0.00000 +Xenorhabdus nematophila 628 S 1 0 1 0.00000 +Xenorhabdus budapestensis 290110 S 1 0 1 0.00000 +Arsenophonus nasoniae 638 S 1 0 1 0.00000 +Candidatus Arsenophonus lipoptenae 634113 S 1 0 1 0.00000 +Arsenophonus endosymbiont of Aleurodicus dispersus 235559 S 1 0 1 0.00000 +Pectobacterium versatile 2488639 S 19 3 22 0.00001 +Pectobacterium carotovorum 554 S 3 0 3 0.00000 +Pectobacterium atrosepticum 29471 S 2 0 2 0.00000 +Pectobacterium parmentieri 1905730 S 2 0 2 0.00000 +Pectobacterium polaris 2042057 S 2 0 2 0.00000 +Pectobacterium odoriferum 78398 S 1 0 1 0.00000 +Pectobacterium brasiliense 180957 S 1 0 1 0.00000 +Dickeya paradisiaca 69223 S 3 0 3 0.00000 +Dickeya zeae 204042 S 3 0 3 0.00000 +Dickeya dadantii 204038 S 2 0 2 0.00000 +Dickeya dianthicola 204039 S 1 0 1 0.00000 +Dickeya fangzhongdai 1778540 S 1 0 1 0.00000 +Brenneria rubrifaciens 55213 S 1 0 1 0.00000 +Brenneria goodwinii 1109412 S 1 0 1 0.00000 +Lonsdalea britannica 1082704 S 1 0 1 0.00000 +Candidatus Sodalis pierantonius 1486991 S 3 1 4 0.00000 +Sodalis endosymbiont of Henestaris halophilus 1929246 S 1 0 1 0.00000 +Pragia fontium 82985 S 1 0 1 0.00000 +Jinshanibacter zhutongyuii 2498113 S 1 0 1 0.00000 +Plesiomonas shigelloides 703 S 1 0 1 0.00000 +Acinetobacter baumannii 470 S 10 5 15 0.00001 +Acinetobacter johnsonii 40214 S 7 1 8 0.00000 +Acinetobacter sp. 10FS3-1 2563897 S 2 0 2 0.00000 +Acinetobacter sp. WCHAc010052 2004647 S 1 0 1 0.00000 +Acinetobacter sp. WCHA45 2004644 S 1 0 1 0.00000 +Acinetobacter lwoffii 28090 S 2 0 2 0.00000 +Acinetobacter bereziniae 106648 S 2 0 2 0.00000 +Acinetobacter indicus 756892 S 1 0 1 0.00000 +Acinetobacter equi 1324350 S 1 0 1 0.00000 +Acinetobacter towneri 202956 S 1 0 1 0.00000 +Acinetobacter variabilis 70346 S 1 0 1 0.00000 +Acinetobacter schindleri 108981 S 1 0 1 0.00000 +Moraxella osloensis 34062 S 1 1 2 0.00000 +Pseudomonas putida 303 S 3 0 3 0.00000 +Pseudomonas fulva 47880 S 1 0 1 0.00000 +Pseudomonas aeruginosa 287 S 2 4 6 0.00000 +Pseudomonas oleovorans 301 S 1 0 1 0.00000 +Pseudomonas umsongensis 198618 S 2 0 2 0.00000 +Pseudomonas sp. GR 6-02 1659194 S 1 0 1 0.00000 +Pseudomonas sp. ADPe 2774873 S 1 0 1 0.00000 +Pseudomonas chlororaphis 587753 S 2 0 2 0.00000 +Pseudomonas trivialis 200450 S 1 0 1 0.00000 +Pseudomonas fluorescens 294 S 1 0 1 0.00000 +Pseudomonas stutzeri 316 S 2 0 2 0.00000 +Pseudomonas taetrolens 47884 S 1 0 1 0.00000 +Pseudomonas prosekii 1148509 S 1 0 1 0.00000 +Pseudomonas lurida 244566 S 1 0 1 0.00000 +Oblitimonas alkaliphila 1697053 S 1 0 1 0.00000 +Aeromonas media 651 S 9 0 9 0.00000 +Aeromonas caviae 648 S 7 1 8 0.00000 +Aeromonas sp. ASNIH4 1636609 S 3 0 3 0.00000 +Aeromonas sp. ASNIH7 1920107 S 1 1 2 0.00000 +Aeromonas salmonicida 645 S 2 0 2 0.00000 +Aeromonas hydrophila 644 S 2 0 2 0.00000 +Aeromonas veronii 654 S 2 0 2 0.00000 +Stenotrophomonas sp. Pemsol 2040586 S 1 0 1 0.00000 +Stenotrophomonas sp. 169 2770322 S 1 0 1 0.00000 +Stenotrophomonas rhizophila 216778 S 1 0 1 0.00000 +Thermomonas brevis 215691 S 1 0 1 0.00000 +Thermomonas carbonis 1463158 S 1 0 1 0.00000 +Xylella fastidiosa 2371 S 1 0 1 0.00000 +Luteimonas sp. JM171 1896164 S 1 0 1 0.00000 +Pseudoxanthomonas mexicana 128785 S 1 0 1 0.00000 +Dyella sp. G9 2763498 S 1 3 4 0.00000 +Vibrio cholerae 666 S 3 0 3 0.00000 +Vibrio vulnificus 672 S 1 0 1 0.00000 +Vibrio sp. SM1977 2662262 S 1 0 1 0.00000 +Vibrio owensii 696485 S 1 0 1 0.00000 +Vibrio rumoiensis 76258 S 1 0 1 0.00000 +Vibrio tapetis 52443 S 1 0 1 0.00000 +Vibrio furnissii 29494 S 1 0 1 0.00000 +Vibrio nigripulchritudo 28173 S 1 0 1 0.00000 +Histophilus somni 731 S 3 0 3 0.00000 +[Haemophilus] ducreyi 730 S 2 0 2 0.00000 +Glaesserella parasuis 738 S 1 0 1 0.00000 +Avibacterium paragallinarum 728 S 1 0 1 0.00000 +Gallibacterium anatis 750 S 1 0 1 0.00000 +Shewanella sp. MR-7 60481 S 1 0 1 0.00000 +Shewanella sp. ANA-3 94122 S 1 0 1 0.00000 +Shewanella baltica 62322 S 1 0 1 0.00000 +Marinobacter sp. Arc7-DN-1 2304594 S 1 0 1 0.00000 +Catenovulum sp. CCB-QB4 2172099 S 1 0 1 0.00000 +Thalassotalea crassostreae 1763536 S 1 0 1 0.00000 +Ferrimonas lipolytica 2724191 S 1 0 1 0.00000 +Halomonas sp. GFAJ-1 1118153 S 1 0 1 0.00000 +Halomonas sp. THAF12 2587849 S 1 1 2 0.00000 +Halomonas sp. SF2003 2136172 S 1 1 2 0.00000 +Zymobacter palmae 33074 S 1 0 1 0.00000 +Kushneria marisflavi 157779 S 1 0 1 0.00000 +Nitrosococcus wardiae 1814290 S 4 0 4 0.00000 +Congregibacter litoralis 393662 S 1 0 1 0.00000 +Spongiibacter sp. IMCC21906 1620392 S 1 0 1 0.00000 +Methylophaga frappieri 754477 S 1 0 1 0.00000 +Methylomonas denitrificans 1538553 S 1 0 1 0.00000 +Sphingobium sp. PAMC28499 2565554 S 42 0 42 0.00002 +Sphingomonas sp. C33 2698679 S 1 0 1 0.00000 +Rhodopseudomonas palustris 1076 S 25 0 25 0.00001 +Bradyrhizobium erythrophlei 1437360 S 1 0 1 0.00000 +Bradyrhizobium canariense 255045 S 1 0 1 0.00000 +Bosea sp. PAMC 26642 1792307 S 1 0 1 0.00000 +Bosea sp. Tri-49 1867715 S 1 0 1 0.00000 +Rhizobium rhizoryzae 451876 S 1 0 1 0.00000 +Rhizobium pusense 648995 S 1 1 2 0.00000 +Rhizobium leguminosarum 384 S 1 0 1 0.00000 +Agrobacterium tumefaciens 358 S 1 0 1 0.00000 +Sinorhizobium fredii 380 S 1 0 1 0.00000 +Sinorhizobium sp. BG8 2613773 S 1 0 1 0.00000 +Methylobacterium brachiatum 269660 S 1 0 1 0.00000 +Methylobacterium sp. 4-46 426117 S 1 0 1 0.00000 +Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 2493672 S 1 0 1 0.00000 +Brucella canis 36855 S 1 0 1 0.00000 +Aureimonas sp. AU20 1349819 S 1 0 1 0.00000 +Gemmobacter sp. HYN0069 2169400 S 1 0 1 0.00000 +Sulfitobacter pontiacus 60137 S 1 0 1 0.00000 +Ruegeria pomeroyi 89184 S 1 0 1 0.00000 +Phaeobacter inhibens 221822 S 1 0 1 0.00000 +Rhodospirillum rubrum 1085 S 1 0 1 0.00000 +Candidatus Nesciobacter abundans 2601668 S 1 0 1 0.00000 +Burkholderia gladioli 28095 S 1 0 1 0.00000 +Burkholderia cenocepacia 95486 S 1 0 1 0.00000 +Burkholderia thailandensis 57975 S 1 0 1 0.00000 +Ralstonia solanacearum 305 S 1 1 2 0.00000 +Cupriavidus metallidurans 119219 S 1 0 1 0.00000 +Cupriavidus taiwanensis 164546 S 1 0 1 0.00000 +Paraburkholderia phenoliruptrix 252970 S 1 0 1 0.00000 +Variovorax paradoxus 34073 S 1 0 1 0.00000 +Variovorax sp. PBL-E5 434014 S 1 0 1 0.00000 +Acidovorax sp. 1608163 2478662 S 1 0 1 0.00000 +Candidatus Symbiobacter mobilis 1436290 S 1 0 1 0.00000 +Herbaspirillum hiltneri 341045 S 1 0 1 0.00000 +Herbaspirillum huttiense 863372 S 1 0 1 0.00000 +Methylibium petroleiphilum 105560 S 1 0 1 0.00000 +Paucibacter sp. KCTC 42545 1768242 S 1 0 1 0.00000 +Pigmentiphaga sp. H8 2488560 S 1 0 1 0.00000 +Sutterella wadsworthensis 40545 S 1 0 1 0.00000 +Chromobacterium paludis 2605945 S 1 0 1 0.00000 +Chitinibacter sp. 2T18 2739434 S 1 0 1 0.00000 +Candidatus Accumulibacter phosphatis 327160 S 1 0 1 0.00000 +Geobacter sulfurreducens 35554 S 3 0 3 0.00000 +Anaeromyxobacter sp. K 447217 S 1 0 1 0.00000 +Pseudodesulfovibrio aespoeensis 182210 S 1 0 1 0.00000 +Desulfobacter hydrogenophilus 2291 S 1 0 1 0.00000 +Desulfomonile tiedjei 2358 S 1 0 1 0.00000 +Staphylococcus aureus 1280 S 26 1 27 0.00001 +Staphylococcus cohnii 29382 S 2 0 2 0.00000 +Mammaliicoccus stepanovicii 643214 S 1 0 1 0.00000 +Bacillus dafuensis 1742359 S 1 1 2 0.00000 +Geobacillus sp. 47C-IIb 1963026 S 1 0 1 0.00000 +Anoxybacillus flavithermus 33934 S 1 0 1 0.00000 +Paenibacillus polymyxa 1406 S 1 0 1 0.00000 +Lactiplantibacillus plantarum 1590 S 1 0 1 0.00000 +Ligilactobacillus ruminis 1623 S 1 0 1 0.00000 +Lactococcus sp. KACC 19320 2592653 S 1 0 1 0.00000 +Tepidanaerobacter acetatoxydans 499229 S 1 0 1 0.00000 +Mycobacterium sp. DL592 2675524 S 1 0 1 0.00000 +Mycolicibacterium anyangense 1431246 S 1 0 1 0.00000 +Mycolicibacillus koreensis 1069220 S 1 0 1 0.00000 +Corynebacterium striatum 43770 S 1 0 1 0.00000 +Rhodococcus erythropolis 1833 S 1 0 1 0.00000 +Streptomyces sp. So13.3 2136173 S 1 0 1 0.00000 +Streptomyces sp. NA04227 2742136 S 1 0 1 0.00000 +Streptomyces sp. CLI2509 1984801 S 1 0 1 0.00000 +Streptomyces sp. W1SF4 2305220 S 1 0 1 0.00000 +Streptomyces sp. ICC1 2099583 S 1 1 2 0.00000 +Kytococcus sedentarius 1276 S 1 0 1 0.00000 +Brachybacterium sp. P6-10-X1 1903186 S 1 0 1 0.00000 +Arcanobacterium phocisimile 1302235 S 1 0 1 0.00000 +Trueperella pyogenes 1661 S 1 0 1 0.00000 +Bifidobacterium breve 1685 S 1 0 1 0.00000 +Verrucosispora sp. NA02020 2742132 S 1 0 1 0.00000 +Nocardioides aromaticivorans 200618 S 1 0 1 0.00000 +Candidatus Planktophila sulfonica 1884904 S 1 0 1 0.00000 +Leptolyngbya sp. NIES-3755 1752064 S 1 0 1 0.00000 +Halomicronema hongdechloris 1209493 S 1 0 1 0.00000 +Calothrix parasitica 1973486 S 1 0 1 0.00000 +Flavobacterium johnsoniae 986 S 1 1 2 0.00000 +Capnocytophaga sp. oral taxon 902 2748316 S 1 0 1 0.00000 +Dokdonia sp. Dokd-P16 2173169 S 1 0 1 0.00000 +Muricauda lutaonensis 516051 S 1 0 1 0.00000 +Chryseobacterium gallinarum 1324352 S 1 1 2 0.00000 +Empedobacter falsenii 343874 S 1 0 1 0.00000 +Sphingobacterium psychroaquaticum 561061 S 1 0 1 0.00000 +Mucilaginibacter mali 2740462 S 1 0 1 0.00000 +Prevotella dentalis 52227 S 1 0 1 0.00000 +Prevotella sp. oral taxon 299 652716 S 1 0 1 0.00000 +Chitinophaga pinensis 79329 S 1 0 1 0.00000 +Gemmatimonas aurantiaca 173480 S 1 0 1 0.00000 +Brachyspira murdochii 84378 S 4 0 4 0.00000 +Salinispira pacifica 1307761 S 1 0 1 0.00000 +Borrelia miyamotoi 47466 S 1 0 1 0.00000 +Leptospira santarosai 28183 S 1 0 1 0.00000 +Gimesia chilikensis 2605989 S 1 0 1 0.00000 +Tautonia plasticadhaerens 2527974 S 1 0 1 0.00000 +uncultured bacterium HHV35 558689 S 1 0 1 0.00000 +Homo sapiens 9606 S 807 0 807 0.00033