Mercurial > repos > q2d2 > qiime2__deblur__visualize_stats
changeset 0:c16aced36a6d draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author | q2d2 |
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date | Mon, 29 Aug 2022 19:26:13 +0000 |
parents | |
children | e62bac3eb4af |
files | qiime2__deblur__visualize_stats.xml test-data/.gitkeep |
diffstat | 1 files changed, 69 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__deblur__visualize_stats.xml Mon Aug 29 19:26:13 2022 +0000 @@ -0,0 +1,69 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 deblur visualize-stats" id="qiime2__deblur__visualize_stats" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>Visualize Deblur stats per sample.</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version deblur</version_command> + <command detect_errors="aggressive">q2galaxy run deblur visualize_stats '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <param name="deblur_stats" type="data" format="qza" label="deblur_stats: DeblurStats" help="[required] Summary statistics of the Deblur process."> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="DeblurStats"/> + </options> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['DeblurStats']</validator> + </param> + </inputs> + <outputs> + <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> + </outputs> + <tests/> + <help> +QIIME 2: deblur visualize-stats +=============================== +Visualize Deblur stats per sample. + + +Outputs: +-------- +:visualization.qzv: <no description> + +| + +Description: +------------ +Display Deblur statistics per sample + + +| + +</help> + <citations> + <citation type="bibtex">@article{cite1, + author = {Amir, Amnon and McDonald, Daniel and Navas-Molina, Jose A and Kopylova, Evguenia and Morton, James T and Xu, Zhenjiang Zech and Kightley, Eric P and Thompson, Luke R and Hyde, Embriette R and Gonzalez, Antonio and Knight, Rob}, + journal = {MSystems}, + number = {2}, + pages = {e00191--16}, + publisher = {Am Soc Microbiol}, + title = {Deblur rapidly resolves single-nucleotide community sequence patterns}, + volume = {2}, + year = {2017} +} +</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>