Mercurial > repos > rnateam > blockbuster

annotate tool_dependencies.xml @ 2:0f3d3f9f120f draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
author rnateam
date Fri, 15 Jan 2016 07:52:56 -0500
parents 6ae946589f04
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <!-- blockbuster seems to have no version number, assuming a really small one -->
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0f3d3f9f120f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
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4 <!-- the version 0.0.1.1 fixes the memory leak in blockbuster, but is not yet (15.01.2016) upstream-->
0f3d3f9f120f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
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5 <package name="blockbuster" version="0.0.1.1">
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6 <install version="1.0">
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7 <actions>
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0f3d3f9f120f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
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8 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockbuster/blockbuster-0.0.1.1.tar.gz</action>
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9 <action type="shell_command">make</action>
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10 <action type="move_file">
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11 <source>blockbuster.x</source>
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12 <destination>$INSTALL_DIR/bin</destination>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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16 </action>
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17 </actions>
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18 </install>
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19 <readme>
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20 Blockbuster detects blocks of overlapping reads using a gaussian-distribution approach.
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0f3d3f9f120f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/blockbuster commit 7a097197b6a5eda0ee430b36dd8e91bd3ce1db7b
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21 GCC is needed to compile Blockbuster.
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22 http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html
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23 </readme>
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24 </package>
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25 </tool_dependency>