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comparison test-data/mafft_nwns_result.aln @ 0:a4e086689fae draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13
author rnateam
date Thu, 18 Jun 2015 08:59:56 -0400
parents
children 15974dd17515
comparison
equal deleted inserted replaced
-1:000000000000 0:a4e086689fae
1 CLUSTAL format alignment by MAFFT NW-NS-2 (v7.221)
2
3
4 1== -------------------MNGTE------------------------GDNF--------
5 2== -------------------MNGTE------------------------GPNF--------
6 3== -------------------MNGTE------------------------GINF--------
7 4=p -------------------MNGTE------------------------GKNF--------
8 5=p -------------------MNGTE------------------------GNNF--------
9 6== -------------------MKQVPEF----------------------HEDF--------
10 7== -------------------MRKMS------------------------EEEF--------
11 8=opsin, ------------------------------------------------------------
12 9== -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
13 10== -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
14 11== -------------------MTEAWNV----------AVFAARRSRDD-DDTT--------
15 12== -------------------MA-AWEA----------AFAARRRHEE--EDTT--------
16 13== -------------------MS---------------------------SNSS--------
17 14== ----------MESGNVSSSLFGNVST----------ALRPEARL----SA----------
18 15== ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA----------
19 16== ----------ME------PLCNASEP----------PLRPEAR-----SSGN--------
20 17== ----------MD------ALCNASEP----------PLRPEARM----SSGS--------
21 18== -------------------MTNATGP----------QMAYYGAA----SMD---------
22 19== -------------------MANVTGP----------QMAFYGSG----AAT---------
23 20== ----------ME---SFAVAAAQLGP----------HFAPLS------------------
24 21== ----------ME---SFAVAAAQLGP----------HFAPLS------------------
25 22== ----------MD---SFAAVATQLGP----------QFAAPS------------------
26 23== -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG----------------
27 24== -----MERSLLP---EPPLAMALLGP----------RFEAQTGG----------------
28 25== -------------------MIAVSGP----------SYEAFSYG----GQA---------
29 26== ---------------------MANQL----------SYSSLGWP----YQP---------
30 27== ------------------------------------MVESTTLV----NQT---------
31 28== -------------------------------------MGRDLRD----NET---------
32 29== ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS
33 30== ------------------------------------------------------------
34 31=p ------------------------------------------------------------
35 32== ----------MD-------VLSPG------------QGNNTTSPPAPFETGG--------
36 33=p ----------MD-------VFSFG------------QGNNTTASQEPFGTGG--------
37 34== MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
38 35=p MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
39 36== -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW--------
40
41
42 1== YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK-----
43 2== YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ-----
44 3== YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK-----
45 4=p YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
46 5=p YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
47 6== YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI-----
48 7== YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA-----
49 8=opsin, ------------------------------------------------------------
50 9== QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
51 10== QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
52 11== RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV-----
53 12== RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV-----
54 13== QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST-----
55 14== -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP
56 15== -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP
57 16== GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
58 17== DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
59 18== -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV
60 19== -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV
61 20== ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
62 21== ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
63 22== ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM
64 23== ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM
65 24== ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM
66 25== ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL
67 26== ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM
68 27== -----WWY--NPTVD----------------------------------IHPHWAKFDPI
69 28== -----WWY--NPSIV----------------------------------VHPHWREFDQV
70 29== WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y
71 30== -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
72 31=p -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
73 32== ----------NTTGISDVTV----------------------------------------
74 33=p ----------NVTSISDVTF----------------------------------------
75 34== ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
76 35=p ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
77 36== ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------
78
79
80 1== ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
81 2== ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
82 3== ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
83 4=p ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
84 5=p ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
85 6== ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
86 7== ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
87 8=opsin, --------------------------------------------------DLAETVIA-S
88 9== ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
89 10== ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
90 11== ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
91 12== ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
92 13== ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
93 14== PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
94 15== PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
95 16== PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
96 17== PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
97 18== NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
98 19== NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
99 20== DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
100 21== DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
101 22== DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
102 23== DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
103 24== DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
104 25== NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
105 26== NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
106 27== PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
107 28== PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
108 29== GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
109 30== GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
110 31=p GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
111 32== --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
112 33=p --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
113 34== SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
114 35=p SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
115 36== --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
116 .
117
118 1== TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR
119 2== TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR
120 3== TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR
121 4=p TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
122 5=p TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
123 6== PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT
124 7== FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR
125 8=opsin, TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
126 9== TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR
127 10== TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
128 11== TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK
129 12== TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK
130 13== SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ
131 14== PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K
132 15== PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K
133 16== PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
134 17== PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
135 18== PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK
136 19== PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK
137 20== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
138 21== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
139 22== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
140 23== PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
141 24== PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
142 25== PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP
143 26== PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP
144 27== PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK
145 28== PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK
146 29== PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
147 30== PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
148 31=p PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
149 32== PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
150 33=p PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
151 34== PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
152 35=p PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
153 36== PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA
154 : : * : : :*: : :
155
156 1== FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN
157 2== FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN
158 3== FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN
159 4=p FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN
160 5=p FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN
161 6== FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN
162 7== FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS
163 8=opsin, FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
164 9== FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
165 10== FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
166 11== FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC
167 12== FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV
168 13== FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--
169 14== MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT
170 15== MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT
171 16== MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
172 17== MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
173 18== LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT
174 19== LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT
175 20== MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP
176 21== MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
177 22== MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
178 23== MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP
179 24== MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP
180 25== LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS
181 26== LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS
182 27== MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST
183 28== MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT
184 29== QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
185 30== QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
186 31=p QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
187 32== RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
188 33=p RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
189 34== RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
190 35=p RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
191 36== STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV---------
192 :
193
194 1== ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------
195 2== ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------
196 3== ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------
197 4=p ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------
198 5=p ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------
199 6== ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------
200 7== ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------
201 8=opsin, QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
202 9== QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
203 10== QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------
204 11== QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------
205 12== QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------
206 13== NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------
207 14== RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
208 15== RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
209 16== RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------
210 17== RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------
211 18== FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------
212 19== ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------
213 20== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
214 21== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
215 22== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
216 23== RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------
217 24== RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------
218 25== ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------
219 26== ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------
220 27== RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------
221 28== RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------
222 29== -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
223 30== -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
224 31=p -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
225 32== -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
226 33=p -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
227 34== -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
228 35=p -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
229 36== -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR-------------------------
230 * : * :
231
232 1== ---------------------------------------------------AAAAQQ---
233 2== ---------------------------------------------------AAAQQQ---
234 3== ---------------------------------------------------AAAQQQ---
235 4=p ---------------------------------------------------AAAQQQ---
236 5=p ---------------------------------------------------AAAQQQ---
237 6== ---------------------------------------------------AAKAQA---
238 7== ---------------------------------------------------VAAQQQ---
239 8=opsin, ---------------------------------------------------VAKQQK---
240 9== ---------------------------------------------------VAKQQK---
241 10== ---------------------------------------------------VAKQQK---
242 11== ---------------------------------------------------VAAQQK---
243 12== ---------------------------------------------------VAAQQK---
244 13== ---------------------------------------------------AAAQQK---
245 14== ---------------------------------------------------LRDQAKKM-
246 15== ---------------------------------------------------LRDQAKKM-
247 16== ---------------------------------------------------LREQAKKM-
248 17== ---------------------------------------------------LREQAKKM-
249 18== ---------------------------------------------------MRAQAKKM-
250 19== ---------------------------------------------------MRAQAKKM-
251 20== ---------------------------------------------------MREQAKKM-
252 21== ---------------------------------------------------MREQAKKM-
253 22== ---------------------------------------------------MREQAKKM-
254 23== ---------------------------------------------------MREQAKKM-
255 24== ---------------------------------------------------MRDQAKKM-
256 25== ---------------------------------------------------MREQAKKM-
257 26== ---------------------------------------------------LREQAKKM-
258 27== ---------------------------------------------------MAAMAKRL-
259 28== ---------------------------------------------------MAAMAKRL-
260 29== ----------------------------------P--------GFPR----VEPDS----
261 30== ----------------------------------P--------GFPR----VQPES----
262 31=p ----------------------------------P--------GFPR----VQPES----
263 32== ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-
264 33=p ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-
265 34== YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
266 35=p YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
267 36== --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI
268
269
270 1== ------------------------------------------------------------
271 2== ------------------------------------------------------------
272 3== ------------------------------------------------------------
273 4=p ------------------------------------------------------------
274 5=p ------------------------------------------------------------
275 6== ------------------------------------------------------------
276 7== ------------------------------------------------------------
277 8=opsin, ------------------------------------------------------------
278 9== ------------------------------------------------------------
279 10== ------------------------------------------------------------
280 11== ------------------------------------------------------------
281 12== ------------------------------------------------------------
282 13== ------------------------------------------------------------
283 14== --------------------------------NVESL-----------------------
284 15== --------------------------------NVDSL-----------------------
285 16== --------------------------------NVESL-----------------------
286 17== --------------------------------NVESL-----------------------
287 18== --------------------------------NVSTL-----------------------
288 19== --------------------------------NVTNL-----------------------
289 20== --------------------------------NVKSL-----------------------
290 21== --------------------------------NVKSL-----------------------
291 22== --------------------------------NVKSL-----------------------
292 23== --------------------------------NVKSL-----------------------
293 24== --------------------------------NVKSL-----------------------
294 25== --------------------------------NVASL-----------------------
295 26== --------------------------------NVASL-----------------------
296 27== --------------------------------NAKEL-----------------------
297 28== --------------------------------NAKEL-----------------------
298 29== ---VIAL-----------------NGIVKLQ--------KEVEECAN-------------
299 30== ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
300 31=p ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
301 32== --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-
302 33=p --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-
303 34== --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
304 35=p --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
305 36== AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA
306
307
308 1== --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-
309 2== --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-
310 3== --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-
311 4=p --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-
312 5=p --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-
313 6== --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-
314 7== --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-
315 8=opsin, --------------ESESTQK------AEKEVTRMVVVMVLAFC----------------
316 9== --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-
317 10== --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-
318 11== --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-
319 12== --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-
320 13== --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-
321 14== -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-
322 15== -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-
323 16== -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
324 17== -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
325 18== -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-
326 19== -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-
327 20== -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
328 21== -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
329 22== -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-
330 23== -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-
331 24== -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-
332 25== -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-
333 26== -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-
334 27== -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-
335 28== -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-
336 29== -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
337 30== -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
338 31=p -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
339 32== -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
340 33=p -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
341 34== ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
342 35=p ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
343 36== VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-
344 * . :
345
346 1== HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN
347 2== HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN
348 3== NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN
349 4=p NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN
350 5=p NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN
351 6== HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN
352 7== NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA
353 8=opsin, ------------------------------------------------------------
354 9== NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
355 10== NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
356 11== NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK
357 12== NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK
358 13== HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR
359 14== GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N
360 15== GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S
361 16== GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N
362 17== GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N
363 18== GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET
364 19== GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK
365 20== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
366 21== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
367 22== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
368 23== KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT
369 24== KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT
370 25== NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA
371 26== SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG
372 27== GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC
373 28== GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET
374 29== CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
375 30== CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------
376 31=p CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
377 32== CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
378 33=p CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
379 34== VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
380 35=p VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
381 36== CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------
382
383
384 1== PLGD-DE--SGASTSKTEVSSVS-TSPV--------------------------------
385 2== PLGD-DE--ASATASKTE------TSQV--------------------------------
386 3== PFGD-EDVSSTVSQSKTEVSSVS-SSQV--------------------------------
387 4=p PLGD-DE-SSTVSTSKTEVSS------V--------------------------------
388 5=p PLGD-EE-SSTVSTSKTEVSS------V--------------------------------
389 6== -IEE-DE--ASTSSQVTQVSS------V--------------------------------
390 7== -MTD-ES--DTCSSQKTEVSTVS-STQV--------------------------------
391 8=opsin, ------------------------------------------------------------
392 9== -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
393 10== -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
394 11== -VDD-GS--EASTTSRTEVSSVS-NSSV--------------------------------
395 12== -VDD-GS--EVST-SRTEVSSVS-NSSV--------------------------------
396 13== -TGK-AS--PGTPGPHADVTAAGLRNKV--------------------------------
397 14== EKAP-ES-SAVASTSTTQEP-QQ-TTAA--------------------------------
398 15== EKAP-ES-RAAISTSTTQEQ-QQ-TTAA--------------------------------
399 16== EKSG-EI-SSAQST-TTQEQ-QQ-TTAA--------------------------------
400 17== EKSG-EA-SSAQST-TTQEQTQQ-TSAA--------------------------------
401 18== ETKS-ND-DSQSNSTVAQDKA---------------------------------------
402 19== DPND-VE-ENQSSNTQTQEKS---------------------------------------
403 20== DDGK-SS-DAQSQATASEAESKA-------------------------------------
404 21== DDGK-SS-DAQSQATASEAESKA-------------------------------------
405 22== DDGK-SS-EAQSQATTSEAESKA-------------------------------------
406 23== DEPKPDA-PASDTETTSEADSKA-------------------------------------
407 24== DEPKPDA-PPSDTETTSEAESKD-------------------------------------
408 25== EPSS-DA-VSTTSGTTTVTDNEK-SNA---------------------------------
409 26== ESGS-DV-KSEASATTTMEEKPK-IPEA--------------------------------
410 27== EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
411 28== EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
412 29== -----NINRKLSAAGMHEALKLA-------------------------------------
413 30== -----NINRKLSAAGMHEALKLA-------------------------------------
414 31=p -----NINRKLSAAGMHEALKLA-------------------------------------
415 32== -----RQ-----------------------------------------------------
416 33=p -----RR-----------------------------------------------------
417 34== -----RGHR---------------------------------------------------
418 35=p -----RGHR---------------------------------------------------
419 36== -----RRRRA--------------------------------------------------
420
421
422 1== --------------------------------------------SPA-------------
423 2== --------------------------------------------APA-------------
424 3== --------------------------------------------SPA-------------
425 4=p --------------------------------------------SPA-------------
426 5=p --------------------------------------------SPA-------------
427 6== --------------------------------------------APEK------------
428 7== --------------------------------------------GPN-------------
429 8=opsin, ------------------------------------------------------------
430 9== --------------------------------------------SPA-------------
431 10== --------------------------------------------SPA-------------
432 11== --------------------------------------------APA-------------
433 12== --------------------------------------------SPA-------------
434 13== --------------------------------------------MPAHP---V-------
435 14== ------------------------------------------------------------
436 15== ------------------------------------------------------------
437 16== ------------------------------------------------------------
438 17== ------------------------------------------------------------
439 18== ------------------------------------------------------------
440 19== ------------------------------------------------------------
441 20== ------------------------------------------------------------
442 21== ------------------------------------------------------------
443 22== ------------------------------------------------------------
444 23== ------------------------------------------------------------
445 24== ------------------------------------------------------------
446 25== ------------------------------------------------------------
447 26== ------------------------------------------------------------
448 27== QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA
449 28== QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA
450 29== -------------------------------------------ERPERPEFVLQNADYCR
451 30== -------------------------------------------ERPERSEFVLQNSDHCG
452 31=p -------------------------------------------ERPERSEFVLQNSDHCG
453 32== ------------------------------------------------------------
454 33=p ------------------------------------------------------------
455 34== ------------------------------------------------------------
456 35=p ------------------------------------------------------------
457 36== ---------------------------------------------PQ-------------
458
459
460 1== ------
461 2== ------
462 3== ------
463 4=p ------
464 5=p ------
465 6== ------
466 7== ------
467 8=opsin, ------
468 9== ------
469 10== ------
470 11== ------
471 12== ------
472 13== ------
473 14== ------
474 15== ------
475 16== ------
476 17== ------
477 18== ------
478 19== ------
479 20== ------
480 21== ------
481 22== ------
482 23== ------
483 24== ------
484 25== ------
485 26== ------
486 27== ------
487 28== ------
488 29== KKGHDS
489 30== KKGHDT
490 31=p KKGHDT
491 32== ------
492 33=p ------
493 34== ------
494 35=p ------
495 36== ------
496