view test-data/mafft_nwns_result.aln @ 3:a681631ccee6 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 3dadc4bd6bf2f20b34794c767dfc6d541031914c-dirty
author rnateam
date Thu, 18 Feb 2016 12:05:37 -0500
parents a4e086689fae
children 15974dd17515
line wrap: on
line source

CLUSTAL format alignment by MAFFT NW-NS-2 (v7.221)


1==             -------------------MNGTE------------------------GDNF--------
2==             -------------------MNGTE------------------------GPNF--------
3==             -------------------MNGTE------------------------GINF--------
4=p             -------------------MNGTE------------------------GKNF--------
5=p             -------------------MNGTE------------------------GNNF--------
6==             -------------------MKQVPEF----------------------HEDF--------
7==             -------------------MRKMS------------------------EEEF--------
8=opsin,        ------------------------------------------------------------
9==             -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
10==            -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
11==            -------------------MTEAWNV----------AVFAARRSRDD-DDTT--------
12==            -------------------MA-AWEA----------AFAARRRHEE--EDTT--------
13==            -------------------MS---------------------------SNSS--------
14==            ----------MESGNVSSSLFGNVST----------ALRPEARL----SA----------
15==            ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA----------
16==            ----------ME------PLCNASEP----------PLRPEAR-----SSGN--------
17==            ----------MD------ALCNASEP----------PLRPEARM----SSGS--------
18==            -------------------MTNATGP----------QMAYYGAA----SMD---------
19==            -------------------MANVTGP----------QMAFYGSG----AAT---------
20==            ----------ME---SFAVAAAQLGP----------HFAPLS------------------
21==            ----------ME---SFAVAAAQLGP----------HFAPLS------------------
22==            ----------MD---SFAAVATQLGP----------QFAAPS------------------
23==            -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG----------------
24==            -----MERSLLP---EPPLAMALLGP----------RFEAQTGG----------------
25==            -------------------MIAVSGP----------SYEAFSYG----GQA---------
26==            ---------------------MANQL----------SYSSLGWP----YQP---------
27==            ------------------------------------MVESTTLV----NQT---------
28==            -------------------------------------MGRDLRD----NET---------
29==            ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS
30==            ------------------------------------------------------------
31=p            ------------------------------------------------------------
32==            ----------MD-------VLSPG------------QGNNTTSPPAPFETGG--------
33=p            ----------MD-------VFSFG------------QGNNTTASQEPFGTGG--------
34==            MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
35=p            MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
36==            -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW--------
                                                                            

1==             YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK-----
2==             YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ-----
3==             YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK-----
4=p             YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
5=p             YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
6==             YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI-----
7==             YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA-----
8=opsin,        ------------------------------------------------------------
9==             QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
10==            QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
11==            RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV-----
12==            RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV-----
13==            QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST-----
14==            -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP
15==            -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP
16==            GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
17==            DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
18==            -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV
19==            -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV
20==            ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
21==            ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
22==            ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM
23==            ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM
24==            ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM
25==            ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL
26==            ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM
27==            -----WWY--NPTVD----------------------------------IHPHWAKFDPI
28==            -----WWY--NPSIV----------------------------------VHPHWREFDQV
29==            WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y
30==            -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
31=p            -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
32==            ----------NTTGISDVTV----------------------------------------
33=p            ----------NVTSISDVTF----------------------------------------
34==            ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
35=p            ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
36==            ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------
                                                                            

1==             ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
2==             ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
3==             ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
4=p             ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
5=p             ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
6==             ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
7==             ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
8=opsin,        --------------------------------------------------DLAETVIA-S
9==             ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
10==            ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
11==            ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
12==            ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
13==            ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
14==            PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
15==            PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
16==            PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
17==            PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
18==            NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
19==            NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
20==            DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
21==            DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
22==            DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
23==            DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
24==            DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
25==            NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
26==            NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
27==            PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
28==            PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
29==            GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
30==            GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
31=p            GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
32==            --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
33=p            --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
34==            SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
35=p            SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
36==            --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
                                                                  .         

1==             TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR
2==             TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR
3==             TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR
4=p             TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
5=p             TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
6==             PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT
7==             FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR
8=opsin,        TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
9==             TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR
10==            TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
11==            TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK
12==            TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK
13==            SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ
14==            PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K
15==            PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K
16==            PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
17==            PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
18==            PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK
19==            PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK
20==            PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
21==            PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
22==            PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
23==            PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
24==            PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
25==            PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP
26==            PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP
27==            PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK
28==            PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK
29==            PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
30==            PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
31=p            PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
32==            PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
33=p            PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
34==            PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
35=p            PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
36==            PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA
                            :   :    * :                  :  :*:  :   :     

1==             FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN
2==             FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN
3==             FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN
4=p             FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN
5=p             FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN
6==             FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN
7==             FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS
8=opsin,        FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
9==             FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
10==            FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
11==            FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC
12==            FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV
13==            FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--
14==            MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT
15==            MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT
16==            MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
17==            MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
18==            LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT
19==            LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT
20==            MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP
21==            MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
22==            MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
23==            MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP
24==            MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP
25==            LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS
26==            LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS
27==            MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST
28==            MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT
29==            QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
30==            QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
31=p            QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
32==            RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
33=p            RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
34==            RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
35=p            RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
36==            STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV---------
                                                                 :          

1==             ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------
2==             ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------
3==             ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------
4=p             ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------
5=p             ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------
6==             ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------
7==             ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------
8=opsin,        QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
9==             QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
10==            QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------
11==            QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------
12==            QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------
13==            NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------
14==            RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
15==            RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
16==            RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------
17==            RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------
18==            FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------
19==            ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------
20==            RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
21==            RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
22==            RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
23==            RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------
24==            RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------
25==            ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------
26==            ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------
27==            RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------
28==            RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------
29==            -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
30==            -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
31=p            -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
32==            -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
33=p            -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
34==            -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
35=p            -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
36==            -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR-------------------------
                              *   :   *  :                                  

1==             ---------------------------------------------------AAAAQQ---
2==             ---------------------------------------------------AAAQQQ---
3==             ---------------------------------------------------AAAQQQ---
4=p             ---------------------------------------------------AAAQQQ---
5=p             ---------------------------------------------------AAAQQQ---
6==             ---------------------------------------------------AAKAQA---
7==             ---------------------------------------------------VAAQQQ---
8=opsin,        ---------------------------------------------------VAKQQK---
9==             ---------------------------------------------------VAKQQK---
10==            ---------------------------------------------------VAKQQK---
11==            ---------------------------------------------------VAAQQK---
12==            ---------------------------------------------------VAAQQK---
13==            ---------------------------------------------------AAAQQK---
14==            ---------------------------------------------------LRDQAKKM-
15==            ---------------------------------------------------LRDQAKKM-
16==            ---------------------------------------------------LREQAKKM-
17==            ---------------------------------------------------LREQAKKM-
18==            ---------------------------------------------------MRAQAKKM-
19==            ---------------------------------------------------MRAQAKKM-
20==            ---------------------------------------------------MREQAKKM-
21==            ---------------------------------------------------MREQAKKM-
22==            ---------------------------------------------------MREQAKKM-
23==            ---------------------------------------------------MREQAKKM-
24==            ---------------------------------------------------MRDQAKKM-
25==            ---------------------------------------------------MREQAKKM-
26==            ---------------------------------------------------LREQAKKM-
27==            ---------------------------------------------------MAAMAKRL-
28==            ---------------------------------------------------MAAMAKRL-
29==            ----------------------------------P--------GFPR----VEPDS----
30==            ----------------------------------P--------GFPR----VQPES----
31=p            ----------------------------------P--------GFPR----VQPES----
32==            ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-
33=p            ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-
34==            YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
35=p            YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
36==            --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            --------------------------------NVESL-----------------------
15==            --------------------------------NVDSL-----------------------
16==            --------------------------------NVESL-----------------------
17==            --------------------------------NVESL-----------------------
18==            --------------------------------NVSTL-----------------------
19==            --------------------------------NVTNL-----------------------
20==            --------------------------------NVKSL-----------------------
21==            --------------------------------NVKSL-----------------------
22==            --------------------------------NVKSL-----------------------
23==            --------------------------------NVKSL-----------------------
24==            --------------------------------NVKSL-----------------------
25==            --------------------------------NVASL-----------------------
26==            --------------------------------NVASL-----------------------
27==            --------------------------------NAKEL-----------------------
28==            --------------------------------NAKEL-----------------------
29==            ---VIAL-----------------NGIVKLQ--------KEVEECAN-------------
30==            ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
31=p            ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
32==            --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-
33=p            --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-
34==            --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
35=p            --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
36==            AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA
                                                                            

1==             --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-
2==             --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-
3==             --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-
4=p             --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-
5=p             --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-
6==             --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-
7==             --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-
8=opsin,        --------------ESESTQK------AEKEVTRMVVVMVLAFC----------------
9==             --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-
10==            --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-
11==            --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-
12==            --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-
13==            --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-
14==            -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-
15==            -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-
16==            -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
17==            -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
18==            -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-
19==            -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-
20==            -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
21==            -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
22==            -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-
23==            -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-
24==            -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-
25==            -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-
26==            -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-
27==            -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-
28==            -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-
29==            -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
30==            -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
31=p            -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
32==            -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
33=p            -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
34==            ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
35=p            ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
36==            VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-
                                            * .           :                 

1==             HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN
2==             HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN
3==             NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN
4=p             NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN
5=p             NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN
6==             HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN
7==             NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA
8=opsin,        ------------------------------------------------------------
9==             NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
10==            NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
11==            NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK
12==            NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK
13==            HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR
14==            GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N
15==            GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S
16==            GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N
17==            GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N
18==            GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET
19==            GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK
20==            KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
21==            KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
22==            KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
23==            KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT
24==            KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT
25==            NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA
26==            SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG
27==            GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC
28==            GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET
29==            CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
30==            CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------
31=p            CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
32==            CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
33=p            CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
34==            VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
35=p            VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
36==            CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------
                                                                            

1==             PLGD-DE--SGASTSKTEVSSVS-TSPV--------------------------------
2==             PLGD-DE--ASATASKTE------TSQV--------------------------------
3==             PFGD-EDVSSTVSQSKTEVSSVS-SSQV--------------------------------
4=p             PLGD-DE-SSTVSTSKTEVSS------V--------------------------------
5=p             PLGD-EE-SSTVSTSKTEVSS------V--------------------------------
6==             -IEE-DE--ASTSSQVTQVSS------V--------------------------------
7==             -MTD-ES--DTCSSQKTEVSTVS-STQV--------------------------------
8=opsin,        ------------------------------------------------------------
9==             -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
10==            -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
11==            -VDD-GS--EASTTSRTEVSSVS-NSSV--------------------------------
12==            -VDD-GS--EVST-SRTEVSSVS-NSSV--------------------------------
13==            -TGK-AS--PGTPGPHADVTAAGLRNKV--------------------------------
14==            EKAP-ES-SAVASTSTTQEP-QQ-TTAA--------------------------------
15==            EKAP-ES-RAAISTSTTQEQ-QQ-TTAA--------------------------------
16==            EKSG-EI-SSAQST-TTQEQ-QQ-TTAA--------------------------------
17==            EKSG-EA-SSAQST-TTQEQTQQ-TSAA--------------------------------
18==            ETKS-ND-DSQSNSTVAQDKA---------------------------------------
19==            DPND-VE-ENQSSNTQTQEKS---------------------------------------
20==            DDGK-SS-DAQSQATASEAESKA-------------------------------------
21==            DDGK-SS-DAQSQATASEAESKA-------------------------------------
22==            DDGK-SS-EAQSQATTSEAESKA-------------------------------------
23==            DEPKPDA-PASDTETTSEADSKA-------------------------------------
24==            DEPKPDA-PPSDTETTSEAESKD-------------------------------------
25==            EPSS-DA-VSTTSGTTTVTDNEK-SNA---------------------------------
26==            ESGS-DV-KSEASATTTMEEKPK-IPEA--------------------------------
27==            EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
28==            EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
29==            -----NINRKLSAAGMHEALKLA-------------------------------------
30==            -----NINRKLSAAGMHEALKLA-------------------------------------
31=p            -----NINRKLSAAGMHEALKLA-------------------------------------
32==            -----RQ-----------------------------------------------------
33=p            -----RR-----------------------------------------------------
34==            -----RGHR---------------------------------------------------
35=p            -----RGHR---------------------------------------------------
36==            -----RRRRA--------------------------------------------------
                                                                            

1==             --------------------------------------------SPA-------------
2==             --------------------------------------------APA-------------
3==             --------------------------------------------SPA-------------
4=p             --------------------------------------------SPA-------------
5=p             --------------------------------------------SPA-------------
6==             --------------------------------------------APEK------------
7==             --------------------------------------------GPN-------------
8=opsin,        ------------------------------------------------------------
9==             --------------------------------------------SPA-------------
10==            --------------------------------------------SPA-------------
11==            --------------------------------------------APA-------------
12==            --------------------------------------------SPA-------------
13==            --------------------------------------------MPAHP---V-------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA
28==            QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA
29==            -------------------------------------------ERPERPEFVLQNADYCR
30==            -------------------------------------------ERPERSEFVLQNSDHCG
31=p            -------------------------------------------ERPERSEFVLQNSDHCG
32==            ------------------------------------------------------------
33=p            ------------------------------------------------------------
34==            ------------------------------------------------------------
35=p            ------------------------------------------------------------
36==            ---------------------------------------------PQ-------------
                                                                            

1==             ------
2==             ------
3==             ------
4=p             ------
5=p             ------
6==             ------
7==             ------
8=opsin,        ------
9==             ------
10==            ------
11==            ------
12==            ------
13==            ------
14==            ------
15==            ------
16==            ------
17==            ------
18==            ------
19==            ------
20==            ------
21==            ------
22==            ------
23==            ------
24==            ------
25==            ------
26==            ------
27==            ------
28==            ------
29==            KKGHDS
30==            KKGHDT
31=p            KKGHDT
32==            ------
33=p            ------
34==            ------
35=p            ------
36==            ------