Mercurial > repos > rnateam > mirdeep2_mapper

annotate test-data/cel_cluster.fa @ 0:af18bb0baa92 draft

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Imported from capsule None
author rnateam
date Tue, 27 Jan 2015 09:06:06 -0500
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0
af18bb0baa92 Imported from capsule None
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1 >chrII:11534525-11540624
af18bb0baa92 Imported from capsule None
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2 tccaaaatattagaggccccacgaaaaggggagcagaacgaaaaggggat
af18bb0baa92 Imported from capsule None
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diff changeset
3 ctgcaaaaaggggatctgcgaaaaggggagatacgaaaaggggagatacg
af18bb0baa92 Imported from capsule None
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diff changeset
4 aaaaggggagcaacgaaaaggggatctggcactgtgccaaacgctatttt
af18bb0baa92 Imported from capsule None
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5 tctcaaagaaaacaatacaacgatgctccgatgttacgcgtcgcgtgttg
af18bb0baa92 Imported from capsule None
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diff changeset
6 ttaagcgtatcttctagaagaaaatttcaaaaatcaacgtgcgttgcgtg
af18bb0baa92 Imported from capsule None
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diff changeset
7 agaaaaattgcgttttgtgcgtttggcacagtgccagctccccttttcgt
af18bb0baa92 Imported from capsule None
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8 tgctccccttttcgtatctccccttttcgtatctccccttttcgcagatc
af18bb0baa92 Imported from capsule None
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diff changeset
9 ccctttttgcagatccccttttcgttctgctcccctcgtggggcctcaaa
af18bb0baa92 Imported from capsule None
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diff changeset
10 taatattgtcaatggagcgcagttgcgcacaccgaaatacgcacgaaatt
af18bb0baa92 Imported from capsule None
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11 tgaaattggcaggcctagaaagtctggatttaaaatatttatgcatatta
af18bb0baa92 Imported from capsule None
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12 acctgagtttcggcatgtttagataaatttagattaaaatttattaaata
af18bb0baa92 Imported from capsule None
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13 aaaatatttaaaatttattaaattcaacattatctttaattttacagaaa
af18bb0baa92 Imported from capsule None
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diff changeset
14 taaaaaccaaaaaaccaacgaagtgtaacttttcgacaataaatatttat
af18bb0baa92 Imported from capsule None
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diff changeset
15 aaattattcaattaattggaaatctatttatcacatctcatcgtgaacaa
af18bb0baa92 Imported from capsule None
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16 gcacatggctaaacaatgcctcgactttatccacccatcctggatttttc
af18bb0baa92 Imported from capsule None
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diff changeset
17 ctgttgaaaatcttcaaatccttcatagtctgctcaattgccttaacagc
af18bb0baa92 Imported from capsule None
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diff changeset
18 cttttcccttttcacatccttcgtcaattcctcaaccatcgcctctacaa
af18bb0baa92 Imported from capsule None
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diff changeset
19 gttgtgatcgtgaggccccttcaacgaatttcttgtccaatacatctctg
af18bb0baa92 Imported from capsule None
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diff changeset
20 agctgaaaaataagtccctttattcatgtgcaccacctgccactcattca
af18bb0baa92 Imported from capsule None
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21 ttttagatcctaatcctgtatttctctctctctctcactaatcgtcccgt
af18bb0baa92 Imported from capsule None
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22 catatctgacccactataatgaggggaccaccactttgccccagatttcg
af18bb0baa92 Imported from capsule None
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23 taatgagccaacatacactaggccctgttctagcacccccattgtgcatg
af18bb0baa92 Imported from capsule None
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24 ggagacacatcgtctgttggttcgggtcagctgagatgacgtggcagatg
af18bb0baa92 Imported from capsule None
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diff changeset
25 acgtcatgtttgttctctagcagatccctatcgtaaaataccgttctttg
af18bb0baa92 Imported from capsule None
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diff changeset
26 ttcgtttatgagcacttcttgggaaacaagaagaatattagagaatattg
af18bb0baa92 Imported from capsule None
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diff changeset
27 gattttaggaaatttcttgaccctaataatatgtatctcatggggctaat
af18bb0baa92 Imported from capsule None
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diff changeset
28 tacgaaagatttagagctcactaaagcagatgtggataagctggaactat
af18bb0baa92 Imported from capsule None
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diff changeset
29 agtcaattctcacgagatattattattagcttactcgttgaatttgatgc
af18bb0baa92 Imported from capsule None
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diff changeset
30 cgtgttaggtagaagccgagaacacgatgaaccttggaagttatgtagtc
af18bb0baa92 Imported from capsule None
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diff changeset
31 gagttttctggaagaaaaagtatatatagtttgataaaaagttacgtcat
af18bb0baa92 Imported from capsule None
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32 aagttattggtcccgagtgtgtacactagaaacttgcgcaatcagttggt
af18bb0baa92 Imported from capsule None
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diff changeset
33 caggtggtctaggacctttacatgtaatataattcattggtttgttgctc
af18bb0baa92 Imported from capsule None
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34 tagatctcaaagaatatggttttcctgctgagaaacaaaatttttttttc
af18bb0baa92 Imported from capsule None
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35 aaatgttcgcgatattatacgatttttttgcgctgaaaaatacggtatcc
af18bb0baa92 Imported from capsule None
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diff changeset
36 ggactcgacacgacagtttttcaataaattcggaaaggtacatatgcgcc
af18bb0baa92 Imported from capsule None
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diff changeset
37 tttgaagagtactgtaattttaaacatttgttgatgcagtaaatattctc
af18bb0baa92 Imported from capsule None
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diff changeset
38 acggatttttagaggtttttttttgaatatttatacagttatattagagt
af18bb0baa92 Imported from capsule None
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diff changeset
39 taaaaaaataaatctatttttatcgaaatttatgaaaaatctactcccca
af18bb0baa92 Imported from capsule None
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diff changeset
40 gaaacaaagtttgaatttacttaaaatgtatgtgcgcctttttaaattca
af18bb0baa92 Imported from capsule None
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diff changeset
41 acaaaaatttatcaaattttgtctttttaatcacttttacttttttttcg
af18bb0baa92 Imported from capsule None
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diff changeset
42 aaaaaaaaaaaaactttaaaaacaccgaaaattaaaatttttaattaccg
af18bb0baa92 Imported from capsule None
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diff changeset
43 taatcctttaaaggcgcacacctctttttcgcaatcataaaaatttacag
af18bb0baa92 Imported from capsule None
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diff changeset
44 gcacagaatttcctactgtaacgtgttttctcgatagaaacgtttctcca
af18bb0baa92 Imported from capsule None
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diff changeset
45 aatcgaaatttttattagcaatcatcaattcgtcatgtttctgtgctgga
af18bb0baa92 Imported from capsule None
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diff changeset
46 gcacattgttatgcagtgctcatgaatattcacagttgaaaatcgaattt
af18bb0baa92 Imported from capsule None
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diff changeset
47 ttttttcttatttttattaacttctctcctcactcaagtgcaatctcatt
af18bb0baa92 Imported from capsule None
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diff changeset
48 tcggcggaacgatgaaagcggactcgtttgaaacggattacactgctggc
af18bb0baa92 Imported from capsule None
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diff changeset
49 tggctccatcttttttatttctggtttttttcccgacacgggaggtcatc
af18bb0baa92 Imported from capsule None
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diff changeset
50 cgtccacgtcttcaatcttattcgcttctccttctatctatctctcttcc
af18bb0baa92 Imported from capsule None
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diff changeset
51 aaaaaaatggaacagattgtccgccttctactttccgcatgcgcctattc
af18bb0baa92 Imported from capsule None
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diff changeset
52 tagacatcgagaagaagcgagagaatccgaaaaactccgccgtccggcgc
af18bb0baa92 Imported from capsule None
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53 ctagcgttcatcccgtcgcatccaatttccttcacccctgtctccagtct
af18bb0baa92 Imported from capsule None
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54 ctaatctgtgtttcccagaccttctccttcttcttctcccctctttcttc
af18bb0baa92 Imported from capsule None
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diff changeset
55 cctttcttttctacgattcctagacctgcccggttgaccatcgggcccac
af18bb0baa92 Imported from capsule None
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diff changeset
56 catttatcgagcgcgtccgtctgttcgttgctgtgagcgcgcgcgcgcga
af18bb0baa92 Imported from capsule None
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diff changeset
57 gcgcacactgcacaccatttgaccgcaacgagccgagagagtgtgtgaaa
af18bb0baa92 Imported from capsule None
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diff changeset
58 tgaagagacgccgagtggacacgttgctctacaccaaacgcgctacacca
af18bb0baa92 Imported from capsule None
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diff changeset
59 aatgggcggagacccaatggtgcaccaagtcagcagtataaaaggaatgg
af18bb0baa92 Imported from capsule None
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diff changeset
60 aaatggtccattcagtcatcagttgtttttttattttctcttttctccca
af18bb0baa92 Imported from capsule None
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diff changeset
61 tcactttctcccttcttcccctctcctaatttccattcccaactattatt
af18bb0baa92 Imported from capsule None
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diff changeset
62 ctcggatcagatcgagccattgctggtttcttccacagtggtactttcca
af18bb0baa92 Imported from capsule None
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diff changeset
63 ttagaactatcaccgggtggaaactagcagtggctcgatcttttccactt
af18bb0baa92 Imported from capsule None
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diff changeset
64 gctccaccgctgtcggggaaccgcgccaattttcgcttcagtgctagacc
af18bb0baa92 Imported from capsule None
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diff changeset
65 atccaaagtgtctatcaccgggtgaaaattcgcatgggtccccgacgcgg
af18bb0baa92 Imported from capsule None
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diff changeset
66 aaagataaaatatcttaaaatcgattctagaaacccttggaccagtgtgg
af18bb0baa92 Imported from capsule None
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diff changeset
67 gtgtccgttgcggtgctacattctctaatctgtatcaccgggtgaacact
af18bb0baa92 Imported from capsule None
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diff changeset
68 tgcagtggtcctcgtggtttctctgtgagccaggtcctgttccggttttt
af18bb0baa92 Imported from capsule None
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diff changeset
69 tccgtggtgataacgcatccaaaagtctctatcaccgggagaaaaactgg
af18bb0baa92 Imported from capsule None
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diff changeset
70 agtaggacctgtgactcattccgatttctggagttttcccctacattcta
af18bb0baa92 Imported from capsule None
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diff changeset
71 ccattcagctactgattattgaattcctgatataccgagagcccagctga
af18bb0baa92 Imported from capsule None
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diff changeset
72 tttcgtcttggtaataagctcgtcattgagattatcaccgggtgtaaatc
af18bb0baa92 Imported from capsule None
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diff changeset
73 agcttggctctggtgtctccgaacctcctgtccgcacctcagtggatgta
af18bb0baa92 Imported from capsule None
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diff changeset
74 tgccatgatgataagatatcagaaatcctatcaccgggtgtacatcagct
af18bb0baa92 Imported from capsule None
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diff changeset
75 aaggtgcgggtacaggtgcatttgatatcaaggtgagttatttttaagtg
af18bb0baa92 Imported from capsule None
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diff changeset
76 ggtcccagagaccttggtggtttttctctgcagtgatagatacttctaac
af18bb0baa92 Imported from capsule None
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diff changeset
77 aactcgctatcaccgggtgaaaaatcacctaggtctggagcctcctgctc
af18bb0baa92 Imported from capsule None
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diff changeset
78 tttttttgctgtttttaaacttaaacttaaaactaacactttatcaaaat
af18bb0baa92 Imported from capsule None
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diff changeset
79 aaagtcttccaaaatcttttttctgatctgccggaagactttccatgaat
af18bb0baa92 Imported from capsule None
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diff changeset
80 ttgtccaaaactcgttgcactttatcctcgtcgtaatcatttgacaccat
af18bb0baa92 Imported from capsule None
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diff changeset
81 atctttggataactagaataattgaacattggtttaaaaaaattctctca
af18bb0baa92 Imported from capsule None
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diff changeset
82 aaaaaaaaatcacaaacctgatgaattttagcctcatctatagcagtatc
af18bb0baa92 Imported from capsule None
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diff changeset
83 tgcgagaagaatcgtaagattcattgataattctatatattttccaataa
af18bb0baa92 Imported from capsule None
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diff changeset
84 ttttatccgaagctggatgtgaagtttctacagtacctccgtggcataat
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
85 actacaatggaagcaaaaagagcgacaattaggatcgtcattttagtgga
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
86 gaatgatgaattgacccggctctttgggggttggaggattcattttcccc
af18bb0baa92 Imported from capsule None
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parents:
diff changeset
87 ttcaacaggtgctcaaataattaaagagaatagaaccgacgatatatggg
af18bb0baa92 Imported from capsule None
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diff changeset
88 tcaaatgtttatacagttgtgctactaaacgtattgttacacgcgttatt
af18bb0baa92 Imported from capsule None
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diff changeset
89 aataattagaattagaattatatcgttttgtacggattgagaatcccatt
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
90 tgggtcgaaaatgttcttgagcttctttgtcaaaagtcgttcttcaggat
af18bb0baa92 Imported from capsule None
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diff changeset
91 cttttccgaatgtggagtacggtagcttcagttgaccgattccatgttca
af18bb0baa92 Imported from capsule None
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diff changeset
92 gctgaaattgacccgccgtgatcgacaacccattcgtagaggaagggata
af18bb0baa92 Imported from capsule None
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diff changeset
93 gagcctggaatttgaaattattaatagaattaaaattttataaaaaagaa
af18bb0baa92 Imported from capsule None
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diff changeset
94 aaatctcgaaacttacaatttttcaagttcttcattgtgtttttcagatg
af18bb0baa92 Imported from capsule None
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diff changeset
95 taatatttaaatgagtgtttccatctcccaaatgtccataagtgacaatt
af18bb0baa92 Imported from capsule None
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diff changeset
96 cttttagccaaagaaccacatcgttccttcatcacattcgtcaattcata
af18bb0baa92 Imported from capsule None
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diff changeset
97 ataattttccaatggtaaagaaacatcatgcttatagacatatccatctc
af18bb0baa92 Imported from capsule None
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diff changeset
98 tggtaaccgccaatggtgcactttctctcaattgccacatcttcgtagct
af18bb0baa92 Imported from capsule None
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diff changeset
99 tctgcagaagatccagcgagcactccgtcgataatcagattttttgagag
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
100 gcattcatccaaaaatgcgctcattttctccatatcgtgatcttcattgg
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
101 atcctgatgtttcgacaaggatcgagaatggggttggagcattcagtact
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
102 gggtgcaatcctagattcgttttcaaacattccatcgtagcatcgtcgag
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
103 aagttcgaaggaggaaaggatttcagtgaggctggattttgcaagcttca
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
104 gtacttcgcagcattttttgaaggattcgatgcctgaaaaaaattagaaa
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
105 ttgaaaaatttgaacccattatataaatattcaacctaccaagcatcgca
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
106 ctttgtacacttttcggtttaggaaccgcagtcattgtgacgcttgtgat
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
107 aacacccaactgcccttcacttcccaagaataggtgtggagtgtgcaaag
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
108 ttgtgttgtccttccgaatgcttgatcccaaatgtagaacagttccatgt
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
109 tcatcgggaagaaccaccgtgagcccgagaagatgtgcgtgaagacttcc
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
110 gtatcgaatcaaccgaatccctcctgcacacgtggcaatatttcctccaa
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
111 tctgacaggatcctttggctccgagatcaaaaggcatcatatatccgagt
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
112 tttgcaagtttgttgtccaagtcttccagaataaaaccagaatcacactt
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
113 gagaattcccattgtgtcgtcgaaagagaattgcttgttgattttattca
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
114 ttgatataacaacttcatcatgtactggaattgatccaccaacgagtcct
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
115 gtattccctccttgtgggactactgccaatttgttcttggagcaatacgc
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
116 caatattgcagaaacctcttcggtgctcttcgggtagaggacgacactgc
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
117 caggacctggaaattaaaacatttaatatttaaagtacctatttaatatt
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
118 aaataaacctaatcttaaaatacaaatacctttaaattggcctgtccaat
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
119 ctgtagtatgatttgtaatatcgtccttcttcactgcatcttgcccgaga
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
120 aaattctcaaatgccattaaatccgactgcatcacttttgcaaatccttc
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
121 atgtctggcggcaagaactgctgcgtagcttctagttggtcttctgattc
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
122 gtggcaagattttcagaaacatctgaattcagaaacttttcaaaaaataa
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
123 cttgaaacttcaaaagaaatagtaggagacaaagctcggctaggtgaccg
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
124
af18bb0baa92 Imported from capsule None
rnateam
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diff changeset
125 >chrIII:2172325-2172669
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
126 CAGGCAGTCAGTCAGTCTCTCTCCACTCACATTCAGTCAGTCAGTGACCA
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
127 TCACCAGGTTGTGTGTGAGCCCCTTCCATTATTCTTCTGAACCCCCCTCC
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
128 CAACGCGGGAAGACTCGCCGGCAATGACACTGGTTATCTTTTCCATCGTG
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
129 GAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAA
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
130 CGAGAAAGGTATCGGGTGTCATAGCCGGCGTGATCATCTTCCTCAAGTAT
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
131 TCCTCTGCTGATTTCGATATTCGGAGGAGCTCGGAGGCTGTTCAGCTGTA
af18bb0baa92 Imported from capsule None
rnateam
parents:
diff changeset
132 AAATTGGTTGATTAAGCTCAAAAATCGGCGTTAACGCGGCTTTCC