Mercurial > repos > rnateam > package_python_2_7_bcbiogff_0_6_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
author rnateam
date Thu, 11 Jun 2015 18:43:32 -0400
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d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="python" version="2.7">
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4 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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5 </package>
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6 <package name="bcbiogff" version="0.6.2">
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7 <install version="1.0">
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8 <actions>
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9 <action type="setup_python_environment">
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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10 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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11 <package name="python" version="2.7" />
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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12 </repository>
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13 <package>https://pypi.python.org/packages/source/b/bcbio-gff/bcbio-gff-0.6.2.tar.gz#md5=d5aae8b125cdad4291f15bec20cfb0ef</package>
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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14 </action>
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15 <action type="set_environment">
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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16 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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17 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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18 </action>
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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19 </actions>
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20 </install>
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21 <readme>
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22 bcbio-gff
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23 ---------
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d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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25 A python library to read and write Generic Feature Format (`GFF`_).
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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26 See the `wiki documentation`_ for details on usage. The goal is to
d7c2624f48f8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit fd63087069bdf87d7a3c65d681a09de76ce8e708
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27 integrate this code in `gffutils`_ and `Biopython`_.
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29 Installation from `bcbio-gff in pypi`_::
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31 pip install bcbio-gff
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33 This code is freely available for use under the `Biopython license &lt;https://github.com/biopython/biopython/blob/master/LICENSE&gt;`_.
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35 .. _GFF: http://www.sequenceontology.org/gff3.shtml
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36 .. _wiki documentation: http://biopython.org/wiki/GFF_Parsing
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37 .. _gffutils: https://github.com/daler/gffutils
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38 .. _Biopython: http://biopython.org
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39 .. _bcbio-gff in pypi: https://pypi.python.org/pypi/bcbio-gff
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42 </readme>
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43 </package>
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44 </tool_dependency>