Mercurial > repos > rnateam > splitfasta

annotate splitfasta.xml @ 1:279e2625de3a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit b1d68befbbaf3a74a67eef3e44dc035eb1a1e555
author rnateam
date Sun, 05 Jul 2015 08:48:09 -0400
parents bc25ba9d9fcf
children a9803f1fff75
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
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1 <tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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2 <requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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3 </requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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4 <stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
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5 <exit_code range="1:" />
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
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6 </stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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7
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
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8 <command interpreter="python">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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9 <![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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10 splitFasta.py $inputFile; echo 'blah' > blah
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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11 ]]></command>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
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12 <inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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14 </inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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15 <outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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16 <collection type="list">
1
279e2625de3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit b1d68befbbaf3a74a67eef3e44dc035eb1a1e555
rnateam
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17 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/>
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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18 </collection>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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19 </outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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20 <help><![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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21 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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22 ]]></help>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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23 </tool>