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comparison splitfasta.xml @ 2:a9803f1fff75 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
author rnateam
date Sun, 05 Jul 2015 10:04:33 -0400
parents 279e2625de3a
children 7439ffbd8943
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1:279e2625de3a 2:a9803f1fff75
9 <![CDATA[ 9 <![CDATA[
10 splitFasta.py $inputFile; echo 'blah' > blah 10 splitFasta.py $inputFile; echo 'blah' > blah
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/> 13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
14 <param name="outputFormat" type="select" label="Output Format">
15 <option value="separate">Separate History Items</option>
16 <option value="collection">Create dataset collection</option>
17 </param>
14 </inputs> 18 </inputs>
15 <outputs> 19 <outputs>
16 <collection type="list"> 20 <collection type="list">
21 <filter>outputFormat == 'collection'</filter>
17 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/> 22 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/>
18 </collection> 23 </collection>
24 <data name="output">
25 <filter>outputFormat == 'separate'</filter>
26 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="true"/>
27 </data>
19 </outputs> 28 </outputs>
20 <help><![CDATA[ 29 <help><![CDATA[
21 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection. 30 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
22 ]]></help> 31 ]]></help>
23 </tool> 32 </tool>