Mercurial > repos > rnateam > splitfasta

annotate splitfasta.xml @ 2:a9803f1fff75 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
author rnateam
date Sun, 05 Jul 2015 10:04:33 -0400
parents 279e2625de3a
children 7439ffbd8943
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
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1 <tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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2 <requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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3 </requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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4 <stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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5 <exit_code range="1:" />
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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6 </stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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8 <command interpreter="python">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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9 <![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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10 splitFasta.py $inputFile; echo 'blah' > blah
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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11 ]]></command>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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12 <inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
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a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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14 <param name="outputFormat" type="select" label="Output Format">
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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15 <option value="separate">Separate History Items</option>
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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16 <option value="collection">Create dataset collection</option>
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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17 </param>
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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18 </inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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19 <outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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20 <collection type="list">
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a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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21 <filter>outputFormat == 'collection'</filter>
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279e2625de3a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit b1d68befbbaf3a74a67eef3e44dc035eb1a1e555
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22 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/>
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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23 </collection>
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a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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24 <data name="output">
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
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25 <filter>outputFormat == 'separate'</filter>
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
rnateam
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26 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="true"/>
a9803f1fff75 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 7e4c12467b74b77f04ca3817518cc4066aa507fe
rnateam
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27 </data>
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bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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28 </outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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29 <help><![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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30 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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31 ]]></help>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
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32 </tool>