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comparison tool_dependencies.xml @ 0:de145ceb3ac0 draft

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author saket-choudhary
date Sat, 18 Oct 2014 03:46:53 -0400
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1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="pyvcf" version="0.6.7">
4 <readme>
5 This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF)
6 package.
7
8 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
9
10 Developmental version is hosted on Github: https://github.com/saketkc/galaxy_tools/packages/package_pyvcf_0_6_7/
11 </readme>
12 <install version="1.0">
13 <actions>
14 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action>
15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
16 <action type="shell_command">
17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
18 python setup.py install --install-lib $INSTALL_DIR/lib/python
19 </action>
20 <action type="set_environment">
21 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
22 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
23 </action>
24 </actions>
25 </install>
26 </package>
27 </tool_dependency>
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