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1 <?xml version='1.0' encoding='utf-8'?>
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2 <tool_dependency>
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3 <package name="pyvcf" version="0.6.7">
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4 <readme>
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5 This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF)
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6 package.
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7
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8 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
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9
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10 Developmental version is hosted on Github: https://github.com/saketkc/galaxy_tools/packages/package_pyvcf_0_6_7/
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11 </readme>
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12 <install version="1.0">
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13 <actions>
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14 <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action>
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15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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16 <action type="shell_command">
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17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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18 python setup.py install --install-lib $INSTALL_DIR/lib/python
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19 </action>
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20 <action type="set_environment">
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21 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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22 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 </package>
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27 </tool_dependency>
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