Mercurial > repos > saket-choudhary > vep_rest
view tool_dependencies.xml @ 0:de145ceb3ac0 draft
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author | saket-choudhary |
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date | Sat, 18 Oct 2014 03:46:53 -0400 |
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<?xml version='1.0' encoding='utf-8'?> <tool_dependency> <package name="pyvcf" version="0.6.7"> <readme> This Galaxy Tool shed package installs pyvcf(https://pypi.python.org/pypi/PyVCF) package. The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF Developmental version is hosted on Github: https://github.com/saketkc/galaxy_tools/packages/package_pyvcf_0_6_7/ </readme> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/P/PyVCF/PyVCF-0.6.7.tar.gz</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python </action> <action type="set_environment"> <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install> </package> </tool_dependency>