Mercurial > repos > saskia-hiltemann > cgatools_v17

annotate tools/cgatools17/vcf_to_listVariants.xml @ 2:977861cbcf10 draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools commit 2e3fa5e8558ca86a5368258969c348b78ffa31ab
author yhoogstrate
date Tue, 10 Nov 2015 10:13:49 -0500
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1 <tool id="vcf_to_listVariants" name="VCF to ListVariants" version="1.0.0">
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2 <description>Convert a VCF file into a ListVariants file</description>
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4 <requirements>
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5 <requirement type="package" version="1.0.0">vcf_to_listVariants</requirement>
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6 </requirements>
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7
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8 <command interpreter="python">
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9 vcf_to_listVariants.py -i $vcf_input -o $listVariants_output
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10 </command>
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12 <inputs>
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13 <param name="vcf_input" format="vcf" type="data" label="VCF SNP/SNV file"/>
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14 </inputs>
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16 <outputs>
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17 <data name="listVariants_output" format="tabular" label="${tool.name} on ${on_string}"/>
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18 </outputs>
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20 <help>Converts SNPs/SNVs from a VCF file into the "listVariants" syntax as used by the Integrative Plot</help>
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21 </tool>