Mercurial > repos > saskia-hiltemann > cgatools_v17

diff tools/cgatools17/vcf_to_listVariants.xml @ 1:3a2e0f376f26 draft

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Minor change to tv2vcf.xml to allow for workflow automation
author dgdekoning
date Wed, 21 Oct 2015 10:09:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/cgatools17/vcf_to_listVariants.xml	Wed Oct 21 10:09:15 2015 -0400
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+<tool id="vcf_to_listVariants" name="VCF to ListVariants" version="1.0.0">
+	<description>Convert a VCF file into a ListVariants file</description>
+	
+	<requirements>
+		<requirement type="package" version="1.0.0">vcf_to_listVariants</requirement>
+	</requirements>
+	
+	<command interpreter="python">
+		vcf_to_listVariants.py -i $vcf_input -o $listVariants_output
+	</command>
+	
+	<inputs>
+		<param name="vcf_input" format="vcf" type="data" label="VCF SNP/SNV file"/>
+	</inputs>
+	
+	<outputs>
+		<data name="listVariants_output" format="tabular" label="${tool.name} on ${on_string}"/>
+	</outputs>
+	
+	<help>Converts SNPs/SNVs from a VCF file into the "listVariants" syntax as used by the Integrative Plot</help>
+</tool>