Mercurial > repos > saskia-hiltemann > cgatools_v17
comparison tools/cgatools17/vcf_to_listVariants.xml @ 1:3a2e0f376f26 draft
Minor change to tv2vcf.xml to allow for workflow automation
| author | dgdekoning |
|---|---|
| date | Wed, 21 Oct 2015 10:09:15 -0400 |
| parents | |
| children |
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| 0:751b62d30ae1 | 1:3a2e0f376f26 |
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| 1 <tool id="vcf_to_listVariants" name="VCF to ListVariants" version="1.0.0"> | |
| 2 <description>Convert a VCF file into a ListVariants file</description> | |
| 3 | |
| 4 <requirements> | |
| 5 <requirement type="package" version="1.0.0">vcf_to_listVariants</requirement> | |
| 6 </requirements> | |
| 7 | |
| 8 <command interpreter="python"> | |
| 9 vcf_to_listVariants.py -i $vcf_input -o $listVariants_output | |
| 10 </command> | |
| 11 | |
| 12 <inputs> | |
| 13 <param name="vcf_input" format="vcf" type="data" label="VCF SNP/SNV file"/> | |
| 14 </inputs> | |
| 15 | |
| 16 <outputs> | |
| 17 <data name="listVariants_output" format="tabular" label="${tool.name} on ${on_string}"/> | |
| 18 </outputs> | |
| 19 | |
| 20 <help>Converts SNPs/SNVs from a VCF file into the "listVariants" syntax as used by the Integrative Plot</help> | |
| 21 </tool> |