Mercurial > repos > saskia-hiltemann > cgatools_v17

annotate tools/cgatools17/vcf_to_listVariants.xml @ 1:3a2e0f376f26 draft

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Minor change to tv2vcf.xml to allow for workflow automation
author dgdekoning
date Wed, 21 Oct 2015 10:09:15 -0400
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3a2e0f376f26 Minor change to tv2vcf.xml to allow for workflow automation
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1 <tool id="vcf_to_listVariants" name="VCF to ListVariants" version="1.0.0">
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2 <description>Convert a VCF file into a ListVariants file</description>
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3
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4 <requirements>
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5 <requirement type="package" version="1.0.0">vcf_to_listVariants</requirement>
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6 </requirements>
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7
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8 <command interpreter="python">
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9 vcf_to_listVariants.py -i $vcf_input -o $listVariants_output
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10 </command>
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12 <inputs>
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13 <param name="vcf_input" format="vcf" type="data" label="VCF SNP/SNV file"/>
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14 </inputs>
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16 <outputs>
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17 <data name="listVariants_output" format="tabular" label="${tool.name} on ${on_string}"/>
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18 </outputs>
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19
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20 <help>Converts SNPs/SNVs from a VCF file into the "listVariants" syntax as used by the Integrative Plot</help>
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21 </tool>