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planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
author scottx611x
date Wed, 11 Oct 2017 13:33:01 -0400
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7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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1 <?xml version='1.0' encoding='utf-8'?>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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2
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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3 <tool id="split_paired_collection" name="Split Paired Collection" version="0.1">
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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4 <description>To split the elements of a Paired Dataset Collection into two distinct outputs</description>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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5 <command>
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6 mv $input_collection.forward $forward_element;
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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7 mv $input_collection.reverse $reverse_element;
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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8 </command>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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9 <inputs>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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10 <param name="input_collection" type="data_collection" collection_type="paired" label="Input Paired Collection"/>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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11 </inputs>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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12 <outputs>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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13 <data name="forward_element" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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14 <data name="reverse_element" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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15 </outputs>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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16 <tests>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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17 <test>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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18 <param name="input_collection">
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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19 <collection type="paired">
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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20 <element name="forward" value="forward.txt" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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21 <element name="reverse" value="reverse.txt" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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22 </collection>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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23 </param>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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24 <output name="forward_element">
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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25 <assert_contents>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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26 <has_line line="Forward Element" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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27 </assert_contents>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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28 </output>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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29 <output name="reverse_element">
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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30 <assert_contents>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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31 <has_line line="Reverse Element" />
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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32 </assert_contents>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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33 </output>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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34 </test>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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35 </tests>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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36 <help>
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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37 .. class:: infomark
7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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39 **Purpose**
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7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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41 To split the elements of a Paired Dataset Collection into two distinct outputs
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43 -----
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45 .. class:: infomark
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7432970f4f80 planemo upload for repository https://github.com/scottx611x/split-paired-collection commit 163187a32873a873de175fb50b5fbe595b456ffd
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47 **Inputs and outputs**
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49 Input: Paired Dataset Collection
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50 Outputs: two files corresponding to the two elements of said collection
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51 </help>
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52 </tool>
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