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annotate env/lib/python3.7/site-packages/cwltool/tests/test_docker.py @ 2:6af9afd405e9 draft

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"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author shellac
date Thu, 14 May 2020 14:56:58 -0400
parents 26e78fe6e8c4
children
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1 import pytest
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2
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3 from distutils import spawn
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4
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5 from cwltool.docker import DockerCommandLineJob
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6 from cwltool.main import main
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7
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8 from .util import get_data, get_main_output, needs_docker, needs_singularity
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9
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10 @needs_docker
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11 def test_docker_workflow(tmpdir):
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12 result_code, _, stderr = get_main_output(
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13 ['--default-container', 'debian', '--outdir', str(tmpdir),
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14 get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"])
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15 assert "completed success" in stderr
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16 assert result_code == 0
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17
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18 def test_docker_iwdr():
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19 result_code = main(
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20 ['--default-container', 'debian',
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21 get_data("tests/wf/iwdr-entry.cwl"), "--message", "hello"])
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22 docker_installed = bool(spawn.find_executable('docker'))
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23 if docker_installed:
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24 assert result_code == 0
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25 else:
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26 assert result_code != 0
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27
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28 @needs_docker
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29 def test_docker_incorrect_image_pull():
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30 result_code = main(
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31 ['--default-container', 'non-existant-weird-image',
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32 get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"])
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33 assert result_code != 0
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34
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35 @needs_docker
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36 def test_docker_file_mount():
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37 # test for bug in
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38 # ContainerCommandLineJob.create_file_and_add_volume()
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39 #
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40 # the bug was that it would use the file literal contents as the
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41 # temporary file name, which can easily result in a file name that
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42 # is too long or otherwise invalid. This test case uses ".."
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43 result_code = main(
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44 [get_data("tests/wf/literalfile.cwl"), get_data("tests/wf/literalfile-job.yml")])
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45 assert result_code == 0