Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/cwltool/tests/test_docker.py @ 2:6af9afd405e9 draft
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author | shellac |
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date | Thu, 14 May 2020 14:56:58 -0400 |
parents | 26e78fe6e8c4 |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/cwltool/tests/test_docker.py Thu May 14 14:56:58 2020 -0400 @@ -0,0 +1,45 @@ +import pytest + +from distutils import spawn + +from cwltool.docker import DockerCommandLineJob +from cwltool.main import main + +from .util import get_data, get_main_output, needs_docker, needs_singularity + +@needs_docker +def test_docker_workflow(tmpdir): + result_code, _, stderr = get_main_output( + ['--default-container', 'debian', '--outdir', str(tmpdir), + get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"]) + assert "completed success" in stderr + assert result_code == 0 + +def test_docker_iwdr(): + result_code = main( + ['--default-container', 'debian', + get_data("tests/wf/iwdr-entry.cwl"), "--message", "hello"]) + docker_installed = bool(spawn.find_executable('docker')) + if docker_installed: + assert result_code == 0 + else: + assert result_code != 0 + +@needs_docker +def test_docker_incorrect_image_pull(): + result_code = main( + ['--default-container', 'non-existant-weird-image', + get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"]) + assert result_code != 0 + +@needs_docker +def test_docker_file_mount(): + # test for bug in + # ContainerCommandLineJob.create_file_and_add_volume() + # + # the bug was that it would use the file literal contents as the + # temporary file name, which can easily result in a file name that + # is too long or otherwise invalid. This test case uses ".." + result_code = main( + [get_data("tests/wf/literalfile.cwl"), get_data("tests/wf/literalfile-job.yml")]) + assert result_code == 0