Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/cwltool/tests/test_docker.py @ 2:6af9afd405e9 draft
"planemo upload commit 0a63dd5f4d38a1f6944587f52a8cd79874177fc1"
author | shellac |
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date | Thu, 14 May 2020 14:56:58 -0400 |
parents | 26e78fe6e8c4 |
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import pytest from distutils import spawn from cwltool.docker import DockerCommandLineJob from cwltool.main import main from .util import get_data, get_main_output, needs_docker, needs_singularity @needs_docker def test_docker_workflow(tmpdir): result_code, _, stderr = get_main_output( ['--default-container', 'debian', '--outdir', str(tmpdir), get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"]) assert "completed success" in stderr assert result_code == 0 def test_docker_iwdr(): result_code = main( ['--default-container', 'debian', get_data("tests/wf/iwdr-entry.cwl"), "--message", "hello"]) docker_installed = bool(spawn.find_executable('docker')) if docker_installed: assert result_code == 0 else: assert result_code != 0 @needs_docker def test_docker_incorrect_image_pull(): result_code = main( ['--default-container', 'non-existant-weird-image', get_data("tests/wf/hello-workflow.cwl"), "--usermessage", "hello"]) assert result_code != 0 @needs_docker def test_docker_file_mount(): # test for bug in # ContainerCommandLineJob.create_file_and_add_volume() # # the bug was that it would use the file literal contents as the # temporary file name, which can easily result in a file name that # is too long or otherwise invalid. This test case uses ".." result_code = main( [get_data("tests/wf/literalfile.cwl"), get_data("tests/wf/literalfile-job.yml")]) assert result_code == 0