Mercurial > repos > shellac > guppy_basecaller

annotate env/lib/python3.7/site-packages/cwltool/tests/secondary-files.cwl @ 3:758bc20232e8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author shellac
date Thu, 14 May 2020 16:20:52 -0400
parents 26e78fe6e8c4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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26e78fe6e8c4 "planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
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1 #!/usr/bin/env cwl-runner
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2
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3 cwlVersion: v1.1.0-dev1
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4
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5 requirements:
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6 - class: InlineJavascriptRequirement
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7 - class: ShellCommandRequirement
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8
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9 class: CommandLineTool
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10
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11 inputs:
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12 fasta_path:
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13 type: File
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14 secondaryFiles:
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15 - pattern: ^.fastq
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16 required: true
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17 - pattern: .crai
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18 required: false
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19 - .bai?
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20 - pattern: "${ return null }"
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21
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22 outputs:
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23 bai_list:
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24 type: File
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25 outputBinding:
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26 glob: lsout
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27 secondaryFiles:
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28 - .bai?
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29 - pattern: "${ return null }"
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30 - pattern: .crai
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31 required: false
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32 - pattern: .idx
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33
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34 baseCommand: ["ls"]
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35
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36 stdout: lsout