Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/bioblend/config.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.7/site-packages/bioblend/config.py Sat May 02 07:14:21 2020 -0400 @@ -0,0 +1,64 @@ +import os + +from six.moves import configparser + +BioBlendConfigPath = '/etc/bioblend.cfg' +BioBlendConfigLocations = [BioBlendConfigPath] +UserConfigPath = os.path.join(os.path.expanduser('~'), '.bioblend') +BioBlendConfigLocations.append(UserConfigPath) + + +class Config(configparser.SafeConfigParser): + """ + BioBlend allows library-wide configuration to be set in external files. + These configuration files can be used to specify access keys, for example. + By default we use two locations for the BioBlend configurations: + + * System wide: ``/etc/bioblend.cfg`` + * Individual user: ``~/.bioblend`` (which works on both Windows and Unix) + """ + def __init__(self, path=None, fp=None, do_load=True): + configparser.SafeConfigParser.__init__(self, {'working_dir': '/mnt/pyami', + 'debug': '0'}) + if do_load: + if path: + self.load_from_path(path) + elif fp: + self.readfp(fp) + else: + self.read(BioBlendConfigLocations) + + def get_value(self, section, name, default=None): + return self.get(section, name, default) + + def get(self, section, name, default=None): + try: + val = configparser.SafeConfigParser.get(self, section, name) + except Exception: + val = default + return val + + def getint(self, section, name, default=0): + try: + val = configparser.SafeConfigParser.getint(self, section, name) + except Exception: + val = int(default) + return val + + def getfloat(self, section, name, default=0.0): + try: + val = configparser.SafeConfigParser.getfloat(self, section, name) + except Exception: + val = float(default) + return val + + def getbool(self, section, name, default=False): + if self.has_option(section, name): + val = self.get(section, name) + if val.lower() == 'true': + val = True + else: + val = False + else: + val = default + return val