Mercurial > repos > tduigou > create_assembly_picklists

annotate test-data/emma_parts/p7_mruby2.gb @ 0:0b38f1504205 draft default tip

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
author tduigou
date Thu, 16 Oct 2025 14:27:06 +0000
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0
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
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1 LOCUS . 2523 bp DNA UNK 01-JAN-1980
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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2 DEFINITION .
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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3 ACCESSION <unknown id>
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4 VERSION <unknown id>
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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5 KEYWORDS .
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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6 SOURCE .
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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7 ORGANISM .
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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8 .
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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9 FEATURES Location/Qualifiers
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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10 terminator 392..419
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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11 /note="T7Te terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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12 /note="phage T7 early transcription terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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13 rep_origin complement(431..1018)
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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14 /direction=LEFT
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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15 /note="ori"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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16 /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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17 replication"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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18 terminator 1040..1069
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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19 /note="T3Te terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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20 /note="phage T3 early transcription terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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21 misc_feature 1143..1148
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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22 /note="BsmBI"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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23 source 5..1149
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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24 /source="Exported"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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25 CDS 1154..1861
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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26 /codon_start=1
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27 /note="mRuby2"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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28 /product="monomeric red fluorescent protein derived from
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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29 mRuby, with improved photophysical properties (Lam et al.,
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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30 2012)"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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31 /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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32 IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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33 VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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34 ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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35 KFAGLGGGMDELYK"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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36 source 1154..1863
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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37 /source="Exported"
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38 misc_feature complement(1869..1874)
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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39 /note="BsmBI"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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40 terminator 1941..1972
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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41 /note="tonB terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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42 /note="bidirectional E. coli tonB-P14 transcription
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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43 terminator"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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44 promoter 1973..2075
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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45 /note="cat promoter"
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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46 /note="promoter of the E. coli cat gene"
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47 source 1868..2523
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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48 /source="Exported"
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49 ORIGIN
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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50 1 ctcaggcgca atcacgaatg aataacggtt tggttggtgc gagtgatttt gatgacgagc
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51 61 gtaatggctg gcctgttgaa caagtctgga aagaaatgca taagcttttg ccattctcac
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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52 121 cggattcagt cgtcactcat ggtgatttct cacttgataa ccttattttt gacgagggga
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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53 181 aattaatagg ttgtattgat gttggacgag tcggaatcgc agaccgatac caggatcttg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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54 241 ccatcctatg gaactgcctc ggtgagtttt ctccttcatt acagaaacgg ctttttcaaa
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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55 301 aatatggtat tgataatcct gatatgaata aattgcagtt tcacttgatg ctcgatgagt
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56 361 ttttctaatg agggcccaaa tgtaatcacc tggctcacct tcgggtgggc ctttctgcgt
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57 421 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgatgctcaa
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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58 481 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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59 541 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc
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60 601 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg
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61 661 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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62 721 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag
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63 781 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga
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64 841 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga
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65 901 agccagttac ctcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg
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66 961 tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga
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67 1021 agatcctttg attttctacc gaagaaaggc ccacccgtga aggtgagcca gtgagttgat
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68 1081 tgcagtccag ttacgctgga gtctgaggct cgtcctgaat gatatcaagc ttgaattcgt
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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69 1141 tacgtctcgc agcgtgtcta agggcgaaga gctgatcaag gaaaatatgc gtatgaaggt
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70 1201 ggtcatggaa ggttcggtca acggccacca attcaaatgc acaggtgaag gagaaggcaa
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71 1261 tccgtacatg ggaactcaaa ccatgaggat caaagtcatc gagggaggac ccctgccatt
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72 1321 tgcctttgac attcttgcca cgtcgttcat gtatggcagc cgtactttta tcaagtaccc
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73 1381 gaaaggcatt cctgatttct ttaaacagtc ctttcctgag ggttttactt gggaaagagt
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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74 1441 tacgagatac gaagatggtg gagtcgtcac cgtcatgcag gacaccagcc ttgaggatgg
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75 1501 ctgtctcgtt taccacgtcc aagtcagagg ggtaaacttt ccctccaatg gtcccgtgat
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76 1561 gcagaagaag accaagggtt gggagcctaa tacagagatg atgtatccag cagatggtgg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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77 1621 tctgagggga tacactcata tggcactgaa agttgatggt ggtggccatc tgtcttgctc
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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78 1681 tttcgtaaca acttacaggt caaaaaagac cgtcgggaac atcaagatgc ccggtatcca
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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79 1741 tgccgttgat caccgcctgg aaaggttaga ggaaagtgac aatgaaatgt tcgtagtaca
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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80 1801 acgcgaacac gcagttgcca agttcgccgg gcttggtggt gggatggacg agctgtacaa
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
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81 1861 gtcaggccga gacgaagacg aattctctag atatcgctca atactgacca tttaaatcat
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82 1921 acctgacctc catagcagaa agtcaaaagc ctccgaccgg aggcttttga cttgatcggc
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83 1981 acgtaagagg ttccaacttt caccataatg aaataagatc actaccgggc gtattttttg
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84 2041 agttatcgag attttcagga gctaaggaag ctaaaatgag ccatattcaa cgggaaacgt
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
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85 2101 cttgctcgag gccgcgatta aattccaaca tggatgctga tttatatggg tataaatggg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
diff changeset
86 2161 ctcgcgataa tgtcgggcaa tcaggtgcga caatctatcg attgtatggg aagcccgatg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
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87 2221 cgccagagtt gtttctgaaa catggcaaag gtagcgttgc caatgatgtt acagatgaga
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
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88 2281 tggtcaggct aaactggctg acggaattta tgcctcttcc gaccatcaag cattttatcc
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
diff changeset
89 2341 gtactcctga tgatgcatgg ttactcacca ctgcgatccc agggaaaaca gcattccagg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
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90 2401 tattagaaga atatcctgat tcaggtgaaa atattgttga tgcgctggca gtgttcctgc
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
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91 2461 gccggttgca ttcgattcct gtttgtaatt gtccttttaa cggcgatcgc gtatttcgtc
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
diff changeset
92 2521 tcg
0b38f1504205 planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
tduigou
parents:
diff changeset
93 //