Mercurial > repos > tduigou > create_assembly_picklists
diff test-data/emma_parts/p7_mruby2.gb @ 0:0b38f1504205 draft default tip
planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Plateo commit cc895a281863630e391c310322fbddfd31ac1f8f-dirty
| author | tduigou |
|---|---|
| date | Thu, 16 Oct 2025 14:27:06 +0000 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/emma_parts/p7_mruby2.gb Thu Oct 16 14:27:06 2025 +0000 @@ -0,0 +1,93 @@ +LOCUS . 2523 bp DNA UNK 01-JAN-1980 +DEFINITION . +ACCESSION <unknown id> +VERSION <unknown id> +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + terminator 392..419 + /note="T7Te terminator" + /note="phage T7 early transcription terminator" + rep_origin complement(431..1018) + /direction=LEFT + /note="ori" + /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of + replication" + terminator 1040..1069 + /note="T3Te terminator" + /note="phage T3 early transcription terminator" + misc_feature 1143..1148 + /note="BsmBI" + source 5..1149 + /source="Exported" + CDS 1154..1861 + /codon_start=1 + /note="mRuby2" + /product="monomeric red fluorescent protein derived from + mRuby, with improved photophysical properties (Lam et al., + 2012)" + /translation="VSKGEELIKENMRMKVVMEGSVNGHQFKCTGEGEGNPYMGTQTMR + IKVIEGGPLPFAFDILATSFMYGSRTFIKYPKGIPDFFKQSFPEGFTWERVTRYEDGGV + VTVMQDTSLEDGCLVYHVQVRGVNFPSNGPVMQKKTKGWEPNTEMMYPADGGLRGYTHM + ALKVDGGGHLSCSFVTTYRSKKTVGNIKMPGIHAVDHRLERLEESDNEMFVVQREHAVA + KFAGLGGGMDELYK" + source 1154..1863 + /source="Exported" + misc_feature complement(1869..1874) + /note="BsmBI" + terminator 1941..1972 + /note="tonB terminator" + /note="bidirectional E. coli tonB-P14 transcription + terminator" + promoter 1973..2075 + /note="cat promoter" + /note="promoter of the E. coli cat gene" + source 1868..2523 + /source="Exported" +ORIGIN + 1 ctcaggcgca atcacgaatg aataacggtt tggttggtgc gagtgatttt gatgacgagc + 61 gtaatggctg gcctgttgaa caagtctgga aagaaatgca taagcttttg ccattctcac + 121 cggattcagt cgtcactcat ggtgatttct cacttgataa ccttattttt gacgagggga + 181 aattaatagg ttgtattgat gttggacgag tcggaatcgc agaccgatac caggatcttg + 241 ccatcctatg gaactgcctc ggtgagtttt ctccttcatt acagaaacgg ctttttcaaa + 301 aatatggtat tgataatcct gatatgaata aattgcagtt tcacttgatg ctcgatgagt + 361 ttttctaatg agggcccaaa tgtaatcacc tggctcacct tcgggtgggc ctttctgcgt + 421 tgctggcgtt tttccatagg ctccgccccc ctgacgagca tcacaaaaat cgatgctcaa + 481 gtcagaggtg gcgaaacccg acaggactat aaagatacca ggcgtttccc cctggaagct + 541 ccctcgtgcg ctctcctgtt ccgaccctgc cgcttaccgg atacctgtcc gcctttctcc + 601 cttcgggaag cgtggcgctt tctcatagct cacgctgtag gtatctcagt tcggtgtagg + 661 tcgttcgctc caagctgggc tgtgtgcacg aaccccccgt tcagcccgac cgctgcgcct + 721 tatccggtaa ctatcgtctt gagtccaacc cggtaagaca cgacttatcg ccactggcag + 781 cagccactgg taacaggatt agcagagcga ggtatgtagg cggtgctaca gagttcttga + 841 agtggtggcc taactacggc tacactagaa gaacagtatt tggtatctgc gctctgctga + 901 agccagttac ctcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg + 961 tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga + 1021 agatcctttg attttctacc gaagaaaggc ccacccgtga aggtgagcca gtgagttgat + 1081 tgcagtccag ttacgctgga gtctgaggct cgtcctgaat gatatcaagc ttgaattcgt + 1141 tacgtctcgc agcgtgtcta agggcgaaga gctgatcaag gaaaatatgc gtatgaaggt + 1201 ggtcatggaa ggttcggtca acggccacca attcaaatgc acaggtgaag gagaaggcaa + 1261 tccgtacatg ggaactcaaa ccatgaggat caaagtcatc gagggaggac ccctgccatt + 1321 tgcctttgac attcttgcca cgtcgttcat gtatggcagc cgtactttta tcaagtaccc + 1381 gaaaggcatt cctgatttct ttaaacagtc ctttcctgag ggttttactt gggaaagagt + 1441 tacgagatac gaagatggtg gagtcgtcac cgtcatgcag gacaccagcc ttgaggatgg + 1501 ctgtctcgtt taccacgtcc aagtcagagg ggtaaacttt ccctccaatg gtcccgtgat + 1561 gcagaagaag accaagggtt gggagcctaa tacagagatg atgtatccag cagatggtgg + 1621 tctgagggga tacactcata tggcactgaa agttgatggt ggtggccatc tgtcttgctc + 1681 tttcgtaaca acttacaggt caaaaaagac cgtcgggaac atcaagatgc ccggtatcca + 1741 tgccgttgat caccgcctgg aaaggttaga ggaaagtgac aatgaaatgt tcgtagtaca + 1801 acgcgaacac gcagttgcca agttcgccgg gcttggtggt gggatggacg agctgtacaa + 1861 gtcaggccga gacgaagacg aattctctag atatcgctca atactgacca tttaaatcat + 1921 acctgacctc catagcagaa agtcaaaagc ctccgaccgg aggcttttga cttgatcggc + 1981 acgtaagagg ttccaacttt caccataatg aaataagatc actaccgggc gtattttttg + 2041 agttatcgag attttcagga gctaaggaag ctaaaatgag ccatattcaa cgggaaacgt + 2101 cttgctcgag gccgcgatta aattccaaca tggatgctga tttatatggg tataaatggg + 2161 ctcgcgataa tgtcgggcaa tcaggtgcga caatctatcg attgtatggg aagcccgatg + 2221 cgccagagtt gtttctgaaa catggcaaag gtagcgttgc caatgatgtt acagatgaga + 2281 tggtcaggct aaactggctg acggaattta tgcctcttcc gaccatcaag cattttatcc + 2341 gtactcctga tgatgcatgg ttactcacca ctgcgatccc agggaaaaca gcattccagg + 2401 tattagaaga atatcctgat tcaggtgaaa atattgttga tgcgctggca gtgttcctgc + 2461 gccggttgca ttcgattcct gtttgtaatt gtccttttaa cggcgatcgc gtatttcgtc + 2521 tcg +//
